Wall clock time and date at job start Fri Apr 10 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.85281 * 2 1 4 4 C 1.55285 * 110.93395 * 236.28481 * 2 1 3 5 5 H 1.09007 * 113.95533 * 78.32091 * 4 2 1 6 6 C 1.54992 * 102.28056 * 200.86284 * 4 2 1 7 7 C 1.54063 * 104.75889 * 24.31201 * 6 4 2 8 8 N 1.48232 * 106.70063 * 1.00478 * 7 6 4 9 9 C 1.47675 * 108.91836 * 88.17711 * 8 7 6 10 10 C 1.52996 * 109.27853 * 312.91923 * 9 8 7 11 11 H 1.09005 * 109.36507 * 64.85054 * 10 9 8 12 12 N 1.46503 * 109.36865 * 184.58964 * 10 9 8 13 13 C 1.38806 * 120.00229 * 275.00564 * 12 10 9 14 14 C 1.40083 * 120.75738 * 179.97438 * 13 12 10 15 15 N 1.31654 * 119.13630 * 180.22458 * 14 13 12 16 16 C 1.33603 * 120.79235 * 359.49777 * 15 14 13 17 17 C 1.41147 * 119.17056 * 180.24019 * 16 15 14 18 18 H 1.07998 * 120.00073 * 173.99104 * 17 16 15 19 19 C 1.40045 * 120.00139 * 353.98936 * 17 16 15 20 20 N 1.30724 * 119.99955 * 6.39853 * 19 17 16 21 21 Si 1.86800 * 119.99988 * 186.40043 * 19 17 16 22 22 H 1.48504 * 109.47091 * 94.98344 * 21 19 17 23 23 H 1.48498 * 109.46938 * 214.98560 * 21 19 17 24 24 H 1.48497 * 109.47039 * 334.98592 * 21 19 17 25 25 N 1.33596 * 121.65434 * 0.51847 * 16 15 14 26 26 C 1.31662 * 120.79244 * 359.73881 * 25 16 15 27 27 C 1.53143 * 110.09250 * 304.78372 * 10 9 8 28 28 H 1.08995 * 109.47523 * 296.69831 * 1 2 3 29 29 H 1.09000 * 109.47053 * 56.70493 * 1 2 3 30 30 H 1.09006 * 109.46702 * 176.69967 * 1 2 3 31 31 H 1.08999 * 110.38143 * 265.49148 * 6 4 2 32 32 H 1.08994 * 110.47974 * 143.18068 * 6 4 2 33 33 H 1.09004 * 110.00909 * 241.69573 * 7 6 4 34 34 H 1.08998 * 110.05031 * 120.33637 * 7 6 4 35 35 H 1.08997 * 109.51081 * 192.97696 * 9 8 7 36 36 H 1.08998 * 109.53372 * 72.87630 * 9 8 7 37 37 H 0.96998 * 119.99636 * 94.99618 * 12 10 9 38 38 H 1.08001 * 120.43137 * 359.95947 * 14 13 12 39 39 H 0.97000 * 119.99934 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.42917 * 179.97438 * 26 25 16 41 41 H 1.09001 * 109.63114 * 173.69810 * 27 10 9 42 42 H 1.08999 * 109.63531 * 294.28501 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0848 -0.8050 -1.2064 5 1 2.0546 -0.2630 -2.1517 6 6 3.5243 -1.1439 -0.7426 7 6 3.4629 -1.0941 0.7960 8 7 2.0617 -0.7714 1.1561 9 6 1.2929 -2.0279 1.2613 10 6 1.5887 -2.9046 0.0428 11 1 2.6377 -3.2006 0.0567 12 7 0.7455 -4.1017 0.0894 13 6 1.1524 -5.2093 0.8203 14 6 0.3583 -6.3620 0.8761 15 7 0.7731 -7.3925 1.5827 16 6 1.9396 -7.3511 2.2327 17 6 2.3533 -8.4775 2.9759 18 1 3.3349 -8.4966 3.4260 19 6 1.4911 -9.5702 3.1298 20 7 0.3549 -9.6023 2.4840 21 14 1.9644 -10.9819 4.2579 22 1 1.3604 -10.7688 5.5977 23 1 1.4663 -12.2594 3.6878 24 1 3.4428 -11.0396 4.3850 25 7 2.7216 -6.2685 2.2013 26 6 2.3667 -5.2002 1.5185 27 6 1.2995 -2.1293 -1.2458 28 1 -0.3634 0.4617 0.9180 29 1 -0.3633 0.5641 -0.8590 30 1 -0.3633 -1.0260 -0.0592 31 1 4.2289 -0.4021 -1.1186 32 1 3.8086 -2.1409 -1.0790 33 1 4.1322 -0.3198 1.1711 34 1 3.7417 -2.0619 1.2127 35 1 0.2274 -1.8009 1.2961 36 1 1.5820 -2.5572 2.1692 37 1 -0.0973 -4.1202 -0.3906 38 1 -0.5839 -6.4032 0.3498 39 1 -0.2421 -10.3593 2.5903 40 1 3.0033 -4.3279 1.4975 41 1 1.6171 -2.7180 -2.1064 42 1 0.2320 -1.9201 -1.3156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170974465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:56 Heat of formation + Delta-G solvation = 74.587169 kcal Electronic energy + Delta-G solvation = -23317.889878 eV Core-core repulsion = 20105.291151 eV Total energy + Delta-G solvation = -3212.598727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34456 -38.89355 -35.50118 -33.39797 -32.16101 -31.86147 -31.81258 -30.56035 -28.31495 -25.96156 -25.23733 -24.32257 -23.21564 -21.81954 -20.97980 -20.57183 -18.66838 -17.71315 -16.72400 -16.58103 -16.05266 -15.43186 -14.82517 -14.58033 -14.44586 -14.35235 -13.52397 -13.41253 -12.96804 -12.81365 -12.65491 -12.53566 -12.42096 -12.08484 -11.87423 -11.69191 -11.30853 -11.19684 -11.15328 -10.85054 -10.69889 -10.56823 -10.50001 -10.27829 -10.17527 -9.94346 -9.36314 -9.21882 -8.98439 -8.42888 -7.25388 -6.75455 -6.40900 -4.36025 2.74389 2.91900 3.13669 3.18869 3.20790 3.83951 4.00599 4.15260 4.45549 4.66364 4.71558 4.76591 5.02640 5.05208 5.07471 5.18303 5.25053 5.30106 5.43678 5.50366 5.62953 5.69432 5.75242 5.82581 5.84859 5.89117 5.93342 5.94112 6.01410 6.07751 6.10561 6.16014 6.27878 6.37946 6.47253 6.82589 6.91374 7.08656 7.21008 7.38690 8.13078 8.33365 8.48356 8.57982 8.76438 9.22648 10.24679 10.40580 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003592 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.124625 B = 7793.979251 C = 8084.144788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.057 3.943 3 H 0.088 0.912 4 C -0.118 4.118 5 H 0.091 0.909 6 C -0.150 4.150 7 C 0.024 3.976 8 N -0.490 5.490 9 C 0.011 3.989 10 C 0.135 3.865 11 H 0.075 0.925 12 N -0.745 5.745 13 C -0.038 4.038 14 C 0.103 3.897 15 N -0.475 5.475 16 C 0.370 3.630 17 C -0.415 4.415 18 H 0.089 0.911 19 C 0.069 3.931 20 N -0.726 5.726 21 Si 0.914 3.086 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.261 1.261 25 N -0.567 5.567 26 C 0.100 3.900 27 C -0.128 4.128 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.385 0.615 38 H 0.126 0.874 39 H 0.271 0.729 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 15.698 -7.223 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.052 4.052 3 H 0.106 0.894 4 C -0.138 4.138 5 H 0.109 0.891 6 C -0.188 4.188 7 C -0.104 4.104 8 N -0.211 5.211 9 C -0.119 4.119 10 C 0.026 3.974 11 H 0.092 0.908 12 N -0.381 5.381 13 C -0.143 4.143 14 C -0.074 4.074 15 N -0.191 5.191 16 C 0.129 3.871 17 C -0.452 4.452 18 H 0.107 0.893 19 C -0.155 4.155 20 N -0.350 5.350 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.185 1.185 25 N -0.286 5.286 26 C -0.074 4.074 27 C -0.166 4.166 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.218 0.782 38 H 0.143 0.857 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.173 15.078 -6.057 16.250 hybrid contribution -0.411 -0.273 -1.099 1.205 sum -0.238 14.805 -7.156 16.446 Atomic orbital electron populations 1.22076 0.94331 1.02903 1.02018 1.23047 0.95306 0.98019 0.88783 0.89381 1.23070 0.94941 0.96407 0.99405 0.89085 1.22996 0.96711 1.02223 0.96910 1.23107 0.91472 1.01960 0.93872 1.66491 1.02019 1.15630 1.36991 1.23266 0.99690 0.89758 0.99192 1.21343 0.96158 0.86022 0.93864 0.90760 1.43564 1.23920 1.12231 1.58371 1.19180 0.99589 0.90848 1.04648 1.22668 0.98045 0.88694 0.98020 1.69280 1.15954 1.25019 1.08830 1.19801 0.85131 0.90642 0.91561 1.19093 1.01670 0.97123 1.27301 0.89329 1.25994 0.94513 0.99334 0.95701 1.70142 1.07037 1.27461 1.30376 0.86212 0.80092 0.79635 0.80249 1.19542 1.20226 1.18463 1.68549 1.35964 1.01085 1.23009 1.22175 0.92859 0.96868 0.95455 1.22191 1.00839 0.95545 0.97986 0.91911 0.92245 0.91016 0.91450 0.90916 0.90333 0.90674 0.89914 0.90251 0.78199 0.85707 0.91770 0.86050 0.91513 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.02 37.16 0.30 -1.13 16 2 C 0.06 0.57 3.65 -65.44 -0.24 0.33 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.12 -1.12 4.10 -87.83 -0.36 -1.48 16 5 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -1.49 5.89 -25.12 -0.15 -1.64 16 7 C 0.02 0.28 6.20 -2.53 -0.02 0.26 16 8 N -0.49 -5.97 6.00 -221.20 -1.33 -7.30 16 9 C 0.01 0.15 5.10 -3.40 -0.02 0.13 16 10 C 0.13 1.82 1.77 -67.86 -0.12 1.70 16 11 H 0.07 1.12 3.72 -51.93 -0.19 0.93 16 12 N -0.74 -11.96 5.21 -51.70 -0.27 -12.23 16 13 C -0.04 -0.80 6.70 -83.32 -0.56 -1.36 16 14 C 0.10 2.43 11.20 -16.94 -0.19 2.24 16 15 N -0.47 -13.21 7.86 -12.49 -0.10 -13.31 16 16 C 0.37 10.64 7.35 -158.22 -1.16 9.47 16 17 C -0.41 -11.73 9.35 -37.80 -0.35 -12.08 16 18 H 0.09 2.43 7.85 -52.49 -0.41 2.01 16 19 C 0.07 1.82 5.49 -17.35 -0.10 1.72 16 20 N -0.73 -19.65 11.44 55.55 0.64 -19.01 16 21 Si 0.91 19.20 29.56 -169.99 -5.03 14.18 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 N -0.57 -15.24 10.34 -12.49 -0.13 -15.37 16 26 C 0.10 2.30 10.15 -16.94 -0.17 2.13 16 27 C -0.13 -1.38 4.70 -26.13 -0.12 -1.51 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.71 4.04 -51.93 -0.21 0.50 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.79 6.94 -51.93 -0.36 0.43 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.95 6.94 -51.93 -0.36 0.59 16 35 H 0.08 1.11 5.62 -51.93 -0.29 0.82 16 36 H 0.08 1.30 7.73 -51.93 -0.40 0.89 16 37 H 0.39 5.52 8.63 -40.82 -0.35 5.17 16 38 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 39 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 40 H 0.12 2.45 6.24 -52.48 -0.33 2.12 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.74 5.83 -51.93 -0.30 0.44 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -30.34 318.30 -10.40 -40.74 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.73 Total: 8.71 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.26 Total: -1.21 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -1.19 Total: -67.21 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.34 -10.40 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170974465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.329 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds