Wall clock time and date at job start Fri Apr 10 2020 19:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.85281 * 2 1 4 4 C 1.55285 * 110.93395 * 236.28481 * 2 1 3 5 5 H 1.09007 * 113.95533 * 78.32091 * 4 2 1 6 6 C 1.54992 * 102.28056 * 200.86284 * 4 2 1 7 7 C 1.54063 * 104.75889 * 24.31201 * 6 4 2 8 8 N 1.48232 * 106.70063 * 1.00478 * 7 6 4 9 9 C 1.47675 * 108.91836 * 88.17711 * 8 7 6 10 10 C 1.52996 * 109.27853 * 312.91923 * 9 8 7 11 11 H 1.09005 * 109.36507 * 64.85054 * 10 9 8 12 12 N 1.46503 * 109.36865 * 184.58964 * 10 9 8 13 13 C 1.38806 * 120.00229 * 275.00564 * 12 10 9 14 14 C 1.40083 * 120.75738 * 179.97438 * 13 12 10 15 15 N 1.31654 * 119.13630 * 180.22458 * 14 13 12 16 16 C 1.33603 * 120.79235 * 359.49777 * 15 14 13 17 17 C 1.41147 * 119.17056 * 180.24019 * 16 15 14 18 18 H 1.07998 * 120.00073 * 173.99104 * 17 16 15 19 19 C 1.40045 * 120.00139 * 353.98936 * 17 16 15 20 20 N 1.30724 * 119.99955 * 6.39853 * 19 17 16 21 21 Si 1.86800 * 119.99988 * 186.40043 * 19 17 16 22 22 H 1.48504 * 109.47091 * 94.98344 * 21 19 17 23 23 H 1.48498 * 109.46938 * 214.98560 * 21 19 17 24 24 H 1.48497 * 109.47039 * 334.98592 * 21 19 17 25 25 N 1.33596 * 121.65434 * 0.51847 * 16 15 14 26 26 C 1.31662 * 120.79244 * 359.73881 * 25 16 15 27 27 C 1.53143 * 110.09250 * 304.78372 * 10 9 8 28 28 H 1.08995 * 109.47523 * 296.69831 * 1 2 3 29 29 H 1.09000 * 109.47053 * 56.70493 * 1 2 3 30 30 H 1.09006 * 109.46702 * 176.69967 * 1 2 3 31 31 H 1.08999 * 110.38143 * 265.49148 * 6 4 2 32 32 H 1.08994 * 110.47974 * 143.18068 * 6 4 2 33 33 H 1.09004 * 110.00909 * 241.69573 * 7 6 4 34 34 H 1.08998 * 110.05031 * 120.33637 * 7 6 4 35 35 H 1.08997 * 109.51081 * 192.97696 * 9 8 7 36 36 H 1.08998 * 109.53372 * 72.87630 * 9 8 7 37 37 H 0.96998 * 119.99636 * 94.99618 * 12 10 9 38 38 H 1.08001 * 120.43137 * 359.95947 * 14 13 12 39 39 H 0.97000 * 119.99934 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.42917 * 179.97438 * 26 25 16 41 41 H 1.09001 * 109.63114 * 173.69810 * 27 10 9 42 42 H 1.08999 * 109.63531 * 294.28501 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0186 0.0000 4 6 2.0848 -0.8050 -1.2064 5 1 2.0546 -0.2630 -2.1517 6 6 3.5243 -1.1439 -0.7426 7 6 3.4629 -1.0941 0.7960 8 7 2.0617 -0.7714 1.1561 9 6 1.2929 -2.0279 1.2613 10 6 1.5887 -2.9046 0.0428 11 1 2.6377 -3.2006 0.0567 12 7 0.7455 -4.1017 0.0894 13 6 1.1524 -5.2093 0.8203 14 6 0.3583 -6.3620 0.8761 15 7 0.7731 -7.3925 1.5827 16 6 1.9396 -7.3511 2.2327 17 6 2.3533 -8.4775 2.9759 18 1 3.3349 -8.4966 3.4260 19 6 1.4911 -9.5702 3.1298 20 7 0.3549 -9.6023 2.4840 21 14 1.9644 -10.9819 4.2579 22 1 1.3604 -10.7688 5.5977 23 1 1.4663 -12.2594 3.6878 24 1 3.4428 -11.0396 4.3850 25 7 2.7216 -6.2685 2.2013 26 6 2.3667 -5.2002 1.5185 27 6 1.2995 -2.1293 -1.2458 28 1 -0.3634 0.4617 0.9180 29 1 -0.3633 0.5641 -0.8590 30 1 -0.3633 -1.0260 -0.0592 31 1 4.2289 -0.4021 -1.1186 32 1 3.8086 -2.1409 -1.0790 33 1 4.1322 -0.3198 1.1711 34 1 3.7417 -2.0619 1.2127 35 1 0.2274 -1.8009 1.2961 36 1 1.5820 -2.5572 2.1692 37 1 -0.0973 -4.1202 -0.3906 38 1 -0.5839 -6.4032 0.3498 39 1 -0.2421 -10.3593 2.5903 40 1 3.0033 -4.3279 1.4975 41 1 1.6171 -2.7180 -2.1064 42 1 0.2320 -1.9201 -1.3156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170974465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:55 Heat of formation + Delta-G solvation = 52.916344 kcal Electronic energy + Delta-G solvation = -23318.829595 eV Core-core repulsion = 20105.291151 eV Total energy + Delta-G solvation = -3213.538444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32006 -40.77630 -37.01458 -35.25743 -33.76953 -33.10145 -32.68963 -32.01225 -29.99165 -27.18955 -26.69622 -25.30662 -24.91205 -23.47524 -22.42024 -21.48527 -19.76326 -19.53480 -18.21494 -17.81558 -17.29591 -17.00298 -16.43571 -16.15520 -15.62477 -15.34859 -15.09082 -14.61013 -14.50573 -14.23751 -14.00785 -13.53354 -13.47706 -13.37705 -12.95882 -12.92587 -12.85609 -12.57247 -12.54632 -12.19549 -11.93323 -11.73606 -11.66525 -11.61738 -11.39806 -11.21491 -11.16809 -11.10645 -10.80166 -9.52192 -9.23496 -8.45803 -8.33249 -6.33822 0.86160 0.99634 1.42356 1.53521 1.57744 2.26722 2.66000 2.83612 3.11191 3.54545 3.77329 3.83185 3.91109 3.93859 4.05485 4.06175 4.10662 4.20662 4.32968 4.34685 4.39320 4.48904 4.51730 4.58309 4.68877 4.79993 4.87024 4.96211 5.00228 5.04552 5.08026 5.15855 5.16998 5.27104 5.29557 5.33353 5.40388 5.56365 5.92768 5.95251 6.22576 6.54240 6.57847 6.78085 7.05251 7.31601 8.28205 8.49940 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003592 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.124625 B = 7793.979251 C = 8084.144788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.056 3.944 3 H 0.102 0.898 4 C -0.108 4.108 5 H 0.118 0.882 6 C -0.147 4.147 7 C 0.021 3.979 8 N -0.501 5.501 9 C 0.021 3.979 10 C 0.135 3.865 11 H 0.060 0.940 12 N -0.730 5.730 13 C -0.001 4.001 14 C 0.080 3.920 15 N -0.504 5.504 16 C 0.339 3.661 17 C -0.460 4.460 18 H 0.080 0.920 19 C 0.028 3.972 20 N -0.763 5.763 21 Si 0.994 3.006 22 H -0.264 1.264 23 H -0.263 1.263 24 H -0.259 1.259 25 N -0.591 5.591 26 C 0.083 3.917 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.399 0.601 38 H 0.153 0.847 39 H 0.279 0.721 40 H 0.144 0.856 41 H 0.067 0.933 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 17.533 -8.647 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 H 0.120 0.880 4 C -0.128 4.128 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.108 4.108 8 N -0.223 5.223 9 C -0.110 4.110 10 C 0.027 3.973 11 H 0.078 0.922 12 N -0.366 5.366 13 C -0.108 4.108 14 C -0.096 4.096 15 N -0.220 5.220 16 C 0.095 3.905 17 C -0.497 4.497 18 H 0.098 0.902 19 C -0.193 4.193 20 N -0.388 5.388 21 Si 0.814 3.186 22 H -0.188 1.188 23 H -0.187 1.187 24 H -0.183 1.183 25 N -0.311 5.311 26 C -0.090 4.090 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.234 0.766 38 H 0.170 0.830 39 H 0.090 0.910 40 H 0.161 0.839 41 H 0.086 0.914 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.371 17.004 -7.538 18.603 hybrid contribution -0.262 -0.544 -0.775 0.983 sum -0.632 16.459 -8.314 18.451 Atomic orbital electron populations 1.22058 0.93590 1.02651 1.02799 1.23178 0.95925 0.98276 0.87830 0.88036 1.23094 0.93882 0.95477 1.00360 0.86412 1.22975 0.97772 1.02271 0.95564 1.23142 0.91263 1.01199 0.95157 1.66499 1.02286 1.14690 1.38819 1.23044 1.00111 0.90349 0.97451 1.21489 0.94815 0.85109 0.95840 0.92223 1.43660 1.24672 1.11504 1.56761 1.19142 0.97880 0.91349 1.02406 1.23158 0.99425 0.88836 0.98206 1.69195 1.16028 1.26990 1.09814 1.20102 0.86090 0.91499 0.92804 1.19346 1.02291 0.98778 1.29314 0.90169 1.26879 0.94059 1.01488 0.96919 1.70207 1.08084 1.28740 1.31760 0.85037 0.79679 0.76051 0.77882 1.18846 1.18700 1.18277 1.68518 1.36519 1.01827 1.24202 1.22566 0.94113 0.96720 0.95608 1.22154 1.02125 0.95893 0.95749 0.92479 0.90029 0.91871 0.89484 0.92047 0.89274 0.92839 0.89445 0.93691 0.76592 0.82956 0.91008 0.83858 0.91423 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.02 71.98 0.58 -1.73 16 2 C 0.06 0.93 3.65 45.33 0.17 1.10 16 3 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.11 -1.64 4.10 -8.98 -0.04 -1.68 16 5 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 6 C -0.15 -2.55 5.89 31.64 0.19 -2.36 16 7 C 0.02 0.45 6.20 86.41 0.54 0.98 16 8 N -0.50 -11.42 6.00 -853.73 -5.12 -16.54 16 9 C 0.02 0.55 5.10 86.15 0.44 0.99 16 10 C 0.13 3.45 1.77 45.04 0.08 3.53 16 11 H 0.06 1.76 3.72 -2.38 -0.01 1.75 16 12 N -0.73 -22.36 5.21 -317.47 -1.65 -24.02 16 13 C 0.00 -0.05 6.70 38.93 0.26 0.21 16 14 C 0.08 3.80 11.20 85.17 0.95 4.75 16 15 N -0.50 -28.93 7.86 -193.43 -1.52 -30.45 16 16 C 0.34 20.32 7.35 134.95 0.99 21.31 16 17 C -0.46 -27.22 9.35 23.42 0.22 -27.00 16 18 H 0.08 4.64 7.85 -2.91 -0.02 4.62 16 19 C 0.03 1.49 5.49 85.30 0.47 1.96 16 20 N -0.76 -42.40 11.44 21.84 0.25 -42.15 16 21 Si 0.99 40.24 29.56 68.60 2.03 42.27 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 25 N -0.59 -33.06 10.34 -193.42 -2.00 -35.06 16 26 C 0.08 3.88 10.15 85.16 0.86 4.75 16 27 C -0.12 -2.25 4.70 30.98 0.15 -2.10 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.05 4.04 -2.38 -0.01 1.04 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.22 6.94 -2.39 -0.02 1.21 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.05 1.36 6.94 -2.39 -0.02 1.34 16 35 H 0.09 2.22 5.62 -2.39 -0.01 2.21 16 36 H 0.04 1.49 7.73 -2.39 -0.02 1.47 16 37 H 0.40 10.43 8.63 -92.71 -0.80 9.63 16 38 H 0.15 6.19 8.06 -2.91 -0.02 6.16 16 39 H 0.28 13.89 8.29 -92.71 -0.77 13.12 16 40 H 0.14 5.92 6.24 -2.91 -0.02 5.90 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 1.43 5.83 -2.39 -0.01 1.42 16 Total: -1.00 -69.14 318.30 -1.91 -71.06 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.25 Total: 30.20 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.85 Total: 4.70 kcal Atomic # 7 Polarization: -138.17 SS G_CDS: -10.05 Total: -148.22 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -69.14 -1.91 -71.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170974465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.972 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds