Wall clock time and date at job start Fri Apr 10 2020 19:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47026 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47007 * 120.00506 * 10 8 6 13 13 H 1.48499 * 109.47172 * 240.00458 * 10 8 6 14 14 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 15 15 C 1.46911 * 110.99614 * 85.00357 * 14 2 1 16 16 H 1.08995 * 109.46754 * 324.99591 * 15 14 2 17 17 C 1.52997 * 109.47257 * 84.99924 * 15 14 2 18 18 C 1.50698 * 109.46730 * 205.00037 * 15 14 2 19 19 N 1.30806 * 126.24949 * 315.02154 * 18 15 14 20 20 N 1.28677 * 110.29180 * 179.97438 * 19 18 15 21 21 C 1.32309 * 109.48431 * 0.02562 * 20 19 18 22 22 C 1.40816 * 133.46701 * 180.02562 * 21 20 19 23 23 C 1.36031 * 119.22510 * 179.23617 * 22 21 20 24 24 C 1.40541 * 119.74518 * 0.62288 * 23 22 21 25 25 C 1.34956 * 120.36724 * 359.57824 * 24 23 22 26 26 N 1.36070 * 126.24383 * 134.71478 * 18 15 14 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 31 31 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 32 32 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 33 33 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 34 34 H 0.96998 * 120.00250 * 179.97438 * 9 8 6 35 35 H 1.00896 * 111.00679 * 321.05250 * 14 2 1 36 36 H 1.09002 * 109.47293 * 300.00271 * 17 15 14 37 37 H 1.09005 * 109.46824 * 59.99929 * 17 15 14 38 38 H 1.08995 * 109.47175 * 179.97438 * 17 15 14 39 39 H 1.08002 * 120.38600 * 359.95476 * 22 21 20 40 40 H 1.08001 * 120.12191 * 180.24515 * 23 22 21 41 41 H 1.07999 * 119.81646 * 179.60830 * 24 23 22 42 42 H 1.08002 * 119.74607 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3687 -1.8037 3.2135 8 6 5.4184 -1.3603 2.8158 9 7 6.2690 -0.7756 2.0007 10 14 6.0411 -2.2409 4.3410 11 1 4.8911 -2.8124 5.0867 12 1 6.9629 -3.3338 3.9399 13 1 6.7643 -1.2768 5.2086 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2226 -2.3469 16 1 1.2576 0.9328 -2.2907 17 6 3.4111 0.9808 -2.3224 18 6 1.9786 -0.5677 -3.6258 19 7 2.6153 -1.6760 -3.9041 20 7 2.2982 -2.0894 -5.0807 21 6 1.4289 -1.2524 -5.6232 22 6 0.7625 -1.2169 -6.8632 23 6 -0.1058 -0.2022 -7.1217 24 6 -0.3151 0.7990 -6.1579 25 6 0.3339 0.7541 -4.9755 26 7 1.2009 -0.2618 -4.6997 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6055 -0.2618 2.1370 31 1 1.7516 -1.7716 1.2057 32 1 3.9994 -1.0729 0.4260 33 1 3.8532 0.4370 1.3573 34 1 7.2197 -0.8013 2.1918 35 1 1.4496 -1.4980 -1.4101 36 1 3.4863 1.5524 -1.3973 37 1 4.2359 0.2704 -2.3786 38 1 3.4579 1.6594 -3.1740 39 1 0.9300 -1.9926 -7.5958 40 1 -0.6277 -0.1629 -8.0664 41 1 -0.9995 1.6086 -6.3645 42 1 0.1658 1.5291 -4.2422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:22 Heat of formation + Delta-G solvation = 98.725310 kcal Electronic energy + Delta-G solvation = -22578.230074 eV Core-core repulsion = 19366.678056 eV Total energy + Delta-G solvation = -3211.552018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.66556 -38.46910 -37.70988 -34.60791 -33.50039 -32.40480 -31.25617 -29.69758 -28.89215 -27.94485 -25.10374 -24.47386 -23.93224 -23.33609 -21.46135 -20.47724 -19.82968 -18.21753 -17.38023 -16.67256 -16.28005 -16.05938 -15.67293 -15.27436 -14.88358 -14.33281 -14.15069 -13.19981 -13.01057 -12.93369 -12.80346 -12.50098 -12.34933 -12.32288 -12.05094 -11.74394 -11.61245 -11.39612 -11.36585 -11.25135 -11.05529 -10.80261 -10.52652 -10.38090 -10.23071 -9.74177 -9.58912 -9.18283 -8.83825 -8.28669 -8.18384 -7.97733 -5.82189 -3.82884 0.32187 0.86395 2.06595 2.60803 3.09457 3.41092 3.48445 3.52241 3.80702 4.08211 4.17020 4.27903 4.45520 4.56914 4.59763 4.74429 4.94538 5.20045 5.26159 5.36892 5.44460 5.46887 5.53403 5.58485 5.59384 5.73470 5.81706 5.85809 5.97959 6.06151 6.14931 6.20592 6.34904 6.59944 6.64902 6.68293 6.89725 7.30430 7.42423 7.69610 7.90561 8.13743 8.31329 8.51854 8.63829 9.26161 9.79434 11.28848 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.003377 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.373025 B = 8289.459995 C = 8759.212843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.076 0.924 4 C -0.097 4.097 5 C 0.029 3.971 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.650 5.650 15 C 0.183 3.817 16 H 0.051 0.949 17 C -0.136 4.136 18 C 0.146 3.854 19 N -0.216 5.216 20 N -0.288 5.288 21 C 0.182 3.818 22 C -0.075 4.075 23 C -0.094 4.094 24 C -0.142 4.142 25 C 0.068 3.932 26 N -0.391 5.391 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.007 0.993 34 H 0.257 0.743 35 H 0.342 0.658 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.034 7.121 -18.849 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 H 0.094 0.906 4 C -0.135 4.135 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.213 1.213 14 N -0.283 5.283 15 C 0.071 3.929 16 H 0.069 0.931 17 C -0.195 4.195 18 C -0.116 4.116 19 N -0.055 5.055 20 N -0.134 5.134 21 C -0.066 4.066 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.163 4.163 25 C -0.055 4.055 26 N -0.071 5.071 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.124 5.943 -18.396 24.545 hybrid contribution -1.421 0.731 0.415 1.651 sum -16.545 6.673 -17.981 25.330 Atomic orbital electron populations 1.22569 0.98673 1.01691 1.01141 1.21873 0.90770 0.98596 0.91408 0.90572 1.21620 1.00861 0.98447 0.92559 1.19012 0.88064 0.96466 0.97264 1.21368 0.91840 1.33971 1.08393 0.93143 1.24990 0.97164 0.95805 0.96466 1.69985 1.02064 1.44445 1.36785 0.86644 0.78820 0.79568 0.83575 1.19939 1.21126 1.21258 1.60614 1.58271 1.08017 1.01368 1.19837 0.99049 0.91526 0.82470 0.93089 1.21823 0.96288 0.99789 1.01561 1.25180 0.95781 0.98340 0.92319 1.74400 1.17430 1.06933 1.06718 1.75089 1.13109 1.22377 1.02846 1.22420 1.01190 0.89242 0.93788 1.20300 0.95958 1.00437 0.92918 1.21158 0.97345 0.93351 1.00014 1.20910 1.01642 1.01175 0.92608 1.21676 0.92431 0.91880 0.99531 1.43822 1.29611 1.19316 1.14391 0.94172 0.91884 0.92672 0.93379 0.93342 0.94548 0.97511 0.93345 0.83910 0.90624 0.90167 0.93447 0.82664 0.83629 0.82835 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.15 37.16 0.34 -1.99 16 2 C 0.08 1.34 2.40 -67.71 -0.16 1.18 16 3 H 0.08 1.23 7.11 -51.93 -0.37 0.86 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 10 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 N -0.65 -10.85 5.50 -100.95 -0.56 -11.40 16 15 C 0.18 2.60 2.90 -68.86 -0.20 2.40 16 16 H 0.05 0.59 6.68 -51.93 -0.35 0.24 16 17 C -0.14 -2.05 9.38 37.16 0.35 -1.70 16 18 C 0.15 2.20 6.63 -154.22 -1.02 1.18 16 19 N -0.22 -3.96 12.18 32.94 0.40 -3.55 16 20 N -0.29 -4.95 12.31 31.14 0.38 -4.57 16 21 C 0.18 2.43 7.92 -156.06 -1.24 1.20 16 22 C -0.07 -0.66 10.11 -39.40 -0.40 -1.06 16 23 C -0.09 -0.55 10.07 -39.51 -0.40 -0.95 16 24 C -0.14 -0.79 9.98 -39.88 -0.40 -1.19 16 25 C 0.07 0.54 10.80 -16.70 -0.18 0.36 16 26 N -0.39 -4.80 2.95 -59.73 -0.18 -4.98 16 27 H 0.04 0.44 7.43 -51.93 -0.39 0.05 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 1.04 7.75 -51.93 -0.40 0.64 16 33 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.34 5.66 8.09 -39.29 -0.32 5.34 16 36 H 0.07 1.16 7.43 -51.93 -0.39 0.78 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.17 0.89 7.75 -52.49 -0.41 0.48 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -35.50 350.12 -9.32 -44.82 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.38 Total: -0.12 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.98 Total: -15.92 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.79 Total: -51.50 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.50 -9.32 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.544 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds