Wall clock time and date at job start Fri Apr 10 2020 19:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47026 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47007 * 120.00506 * 10 8 6 13 13 H 1.48499 * 109.47172 * 240.00458 * 10 8 6 14 14 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 15 15 C 1.46911 * 110.99614 * 85.00357 * 14 2 1 16 16 H 1.08995 * 109.46754 * 324.99591 * 15 14 2 17 17 C 1.52997 * 109.47257 * 84.99924 * 15 14 2 18 18 C 1.50698 * 109.46730 * 205.00037 * 15 14 2 19 19 N 1.30806 * 126.24949 * 315.02154 * 18 15 14 20 20 N 1.28677 * 110.29180 * 179.97438 * 19 18 15 21 21 C 1.32309 * 109.48431 * 0.02562 * 20 19 18 22 22 C 1.40816 * 133.46701 * 180.02562 * 21 20 19 23 23 C 1.36031 * 119.22510 * 179.23617 * 22 21 20 24 24 C 1.40541 * 119.74518 * 0.62288 * 23 22 21 25 25 C 1.34956 * 120.36724 * 359.57824 * 24 23 22 26 26 N 1.36070 * 126.24383 * 134.71478 * 18 15 14 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 31 31 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 32 32 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 33 33 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 34 34 H 0.96998 * 120.00250 * 179.97438 * 9 8 6 35 35 H 1.00896 * 111.00679 * 321.05250 * 14 2 1 36 36 H 1.09002 * 109.47293 * 300.00271 * 17 15 14 37 37 H 1.09005 * 109.46824 * 59.99929 * 17 15 14 38 38 H 1.08995 * 109.47175 * 179.97438 * 17 15 14 39 39 H 1.08002 * 120.38600 * 359.95476 * 22 21 20 40 40 H 1.08001 * 120.12191 * 180.24515 * 23 22 21 41 41 H 1.07999 * 119.81646 * 179.60830 * 24 23 22 42 42 H 1.08002 * 119.74607 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3687 -1.8037 3.2135 8 6 5.4184 -1.3603 2.8158 9 7 6.2690 -0.7756 2.0007 10 14 6.0411 -2.2409 4.3410 11 1 4.8911 -2.8124 5.0867 12 1 6.9629 -3.3338 3.9399 13 1 6.7643 -1.2768 5.2086 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2226 -2.3469 16 1 1.2576 0.9328 -2.2907 17 6 3.4111 0.9808 -2.3224 18 6 1.9786 -0.5677 -3.6258 19 7 2.6153 -1.6760 -3.9041 20 7 2.2982 -2.0894 -5.0807 21 6 1.4289 -1.2524 -5.6232 22 6 0.7625 -1.2169 -6.8632 23 6 -0.1058 -0.2022 -7.1217 24 6 -0.3151 0.7990 -6.1579 25 6 0.3339 0.7541 -4.9755 26 7 1.2009 -0.2618 -4.6997 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6055 -0.2618 2.1370 31 1 1.7516 -1.7716 1.2057 32 1 3.9994 -1.0729 0.4260 33 1 3.8532 0.4370 1.3573 34 1 7.2197 -0.8013 2.1918 35 1 1.4496 -1.4980 -1.4101 36 1 3.4863 1.5524 -1.3973 37 1 4.2359 0.2704 -2.3786 38 1 3.4579 1.6594 -3.1740 39 1 0.9300 -1.9926 -7.5958 40 1 -0.6277 -0.1629 -8.0664 41 1 -0.9995 1.6086 -6.3645 42 1 0.1658 1.5291 -4.2422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:21 Heat of formation + Delta-G solvation = 75.618341 kcal Electronic energy + Delta-G solvation = -22579.232067 eV Core-core repulsion = 19366.678056 eV Total energy + Delta-G solvation = -3212.554012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.59057 -39.31128 -38.89508 -35.90710 -34.96346 -33.95809 -32.07037 -31.42456 -29.86070 -29.18145 -27.00435 -25.21162 -25.00137 -24.21641 -23.18480 -21.63152 -21.26392 -19.09420 -18.35543 -18.13141 -17.62585 -17.09102 -16.63589 -16.48966 -16.12736 -15.76563 -15.35254 -14.60106 -14.41727 -14.14224 -13.87069 -13.62631 -13.46560 -13.42986 -13.18478 -13.11922 -13.01209 -12.86013 -12.59713 -12.49732 -12.40929 -12.26212 -12.12929 -11.78949 -11.55360 -11.49009 -11.19652 -10.94445 -10.58816 -10.46377 -9.24422 -9.09637 -8.11435 -6.21267 -0.28667 0.09292 1.23179 1.38937 1.40790 1.53070 1.63112 2.38625 2.44755 2.95757 3.08792 3.20903 3.34835 3.51321 3.74967 3.89398 4.02277 4.09459 4.13864 4.18504 4.33812 4.44457 4.59729 4.67037 4.74241 4.78801 4.83622 4.97223 5.00267 5.01795 5.04688 5.11422 5.17905 5.28067 5.30664 5.46555 5.48572 5.61394 5.88215 5.93183 6.07395 6.21086 6.37425 6.43464 6.99470 7.46350 7.50414 8.99829 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.003377 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.373025 B = 8289.459995 C = 8759.212843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.077 0.923 4 C -0.088 4.088 5 C 0.040 3.960 6 C -0.541 4.541 7 H 0.054 0.946 8 C -0.003 4.003 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.283 1.283 13 H -0.276 1.276 14 N -0.678 5.678 15 C 0.193 3.807 16 H 0.090 0.910 17 C -0.130 4.130 18 C 0.135 3.865 19 N -0.272 5.272 20 N -0.352 5.352 21 C 0.181 3.819 22 C -0.110 4.110 23 C -0.058 4.058 24 C -0.122 4.122 25 C 0.041 3.959 26 N -0.389 5.389 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.000 1.000 33 H -0.017 1.017 34 H 0.260 0.740 35 H 0.340 0.660 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.168 0.832 40 H 0.192 0.808 41 H 0.202 0.798 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.531 9.063 -20.021 30.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 H 0.095 0.905 4 C -0.126 4.126 5 C 0.002 3.998 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.200 4.200 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.187 1.187 12 H -0.209 1.209 13 H -0.202 1.202 14 N -0.311 5.311 15 C 0.082 3.918 16 H 0.107 0.893 17 C -0.189 4.189 18 C -0.129 4.129 19 N -0.111 5.111 20 N -0.198 5.198 21 C -0.068 4.068 22 C -0.132 4.132 23 C -0.083 4.083 24 C -0.143 4.143 25 C -0.080 4.080 26 N -0.068 5.068 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.018 0.982 33 H 0.001 0.999 34 H 0.068 0.932 35 H 0.159 0.841 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.186 0.814 40 H 0.209 0.791 41 H 0.219 0.781 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -18.642 7.889 -19.571 28.157 hybrid contribution -0.444 0.243 0.587 0.776 sum -19.087 8.132 -18.984 28.122 Atomic orbital electron populations 1.22411 0.95158 1.02228 1.03006 1.21659 0.93403 0.97521 0.89247 0.90476 1.21447 0.96671 0.98822 0.95634 1.18810 0.92096 0.94075 0.94769 1.21852 0.92447 1.34231 1.09379 0.92797 1.25951 0.97491 0.96599 0.99975 1.70134 1.02441 1.45766 1.38858 0.85486 0.78379 0.78301 0.79385 1.18661 1.20855 1.20184 1.60437 1.59086 1.08946 1.02619 1.19752 0.99339 0.91342 0.81393 0.89255 1.21752 0.95755 0.99189 1.02216 1.24988 0.96648 0.98077 0.93210 1.74216 1.19624 1.09191 1.08044 1.74910 1.16460 1.25056 1.03359 1.23021 1.00150 0.88621 0.95019 1.20678 0.97726 1.02922 0.91830 1.21805 0.94266 0.90917 1.01282 1.21607 1.00308 1.01486 0.90862 1.22523 0.92165 0.91625 1.01698 1.43874 1.29739 1.20031 1.13189 0.91406 0.90824 0.92837 0.92540 0.94154 0.98151 0.99875 0.93165 0.84131 0.91409 0.94516 0.90845 0.81404 0.79128 0.78060 0.78742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.15 71.98 0.66 -3.27 16 2 C 0.09 2.93 2.40 44.92 0.11 3.04 16 3 H 0.08 2.47 7.11 -2.39 -0.02 2.45 16 4 C -0.09 -3.69 4.83 30.60 0.15 -3.54 16 5 C 0.04 2.20 4.86 29.85 0.15 2.34 16 6 C -0.54 -32.61 9.11 25.60 0.23 -32.37 16 7 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 8 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 9 N -0.93 -59.98 13.29 21.45 0.28 -59.70 16 10 Si 0.96 46.94 29.54 68.60 2.03 48.97 16 11 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 N -0.68 -23.48 5.50 -473.29 -2.60 -26.08 16 15 C 0.19 5.53 2.90 44.17 0.13 5.66 16 16 H 0.09 1.84 6.68 -2.39 -0.02 1.82 16 17 C -0.13 -4.12 9.38 71.98 0.68 -3.45 16 18 C 0.14 4.20 6.63 137.71 0.91 5.11 16 19 N -0.27 -10.84 12.18 -49.68 -0.61 -11.44 16 20 N -0.35 -13.05 12.31 -55.40 -0.68 -13.74 16 21 C 0.18 4.89 7.92 134.06 1.06 5.95 16 22 C -0.11 -1.73 10.11 22.39 0.23 -1.51 16 23 C -0.06 -0.39 10.07 22.32 0.22 -0.16 16 24 C -0.12 -0.66 9.98 22.08 0.22 -0.44 16 25 C 0.04 0.50 10.80 83.23 0.90 1.40 16 26 N -0.39 -9.18 2.95 -342.88 -1.01 -10.20 16 27 H 0.07 1.22 7.43 -2.39 -0.02 1.20 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.27 8.13 -2.38 -0.02 1.25 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.00 0.00 7.75 -2.39 -0.02 -0.02 16 33 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 34 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.34 11.78 8.09 -89.70 -0.73 11.06 16 36 H 0.07 2.19 7.43 -2.39 -0.02 2.18 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 41 H 0.20 -0.74 8.06 -2.91 -0.02 -0.76 16 42 H 0.20 1.11 7.75 -2.91 -0.02 1.08 16 Total: -1.00 -85.99 350.12 3.80 -82.19 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.29 Total: 10.94 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 6.10 Total: -20.96 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -4.62 Total: -121.15 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -85.99 3.80 -82.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.812 kcal (2) G-P(sol) polarization free energy of solvation -85.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds