Wall clock time and date at job start Fri Apr 10 2020 19:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38670 * 120.42351 * 2 1 4 4 C 1.38632 * 118.42473 * 180.24036 * 3 2 1 5 5 C 1.38232 * 119.15781 * 359.75030 * 4 3 2 6 6 N 1.31857 * 120.76304 * 0.02562 * 5 4 3 7 7 C 1.31879 * 121.72580 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.61688 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47205 * 192.54583 * 8 7 6 10 10 N 1.46903 * 109.46719 * 312.54665 * 8 7 6 11 11 C 1.46904 * 110.99861 * 204.99616 * 10 8 7 12 12 H 1.08996 * 109.46775 * 35.00447 * 11 10 8 13 13 C 1.52995 * 109.47228 * 275.00334 * 11 10 8 14 14 C 1.52998 * 109.46914 * 154.99938 * 11 10 8 15 15 C 1.52998 * 109.47323 * 295.00326 * 14 11 10 16 16 C 1.50704 * 109.47094 * 180.02562 * 15 14 11 17 17 H 1.07994 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47149 * 59.99773 * 20 18 16 22 22 H 1.48504 * 109.47154 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47044 * 299.99646 * 20 18 16 24 24 C 1.53001 * 109.47059 * 72.54437 * 8 7 6 25 25 C 1.53002 * 117.49917 * 60.00333 * 24 8 7 26 26 C 1.53007 * 60.03250 * 107.47588 * 25 24 8 27 27 H 1.08995 * 109.47481 * 264.13564 * 1 2 3 28 28 H 1.09000 * 109.46763 * 24.13332 * 1 2 3 29 29 H 1.08998 * 109.47264 * 144.12998 * 1 2 3 30 30 H 1.07998 * 120.78611 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.41968 * 179.72807 * 4 3 2 32 32 H 1.07993 * 119.61548 * 180.02562 * 5 4 3 33 33 H 1.00892 * 111.00441 * 328.95173 * 10 8 7 34 34 H 1.09007 * 109.46971 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47334 * 299.99770 * 13 11 10 36 36 H 1.08994 * 109.47436 * 60.00261 * 13 11 10 37 37 H 1.08997 * 109.46796 * 55.00574 * 14 11 10 38 38 H 1.09003 * 109.46849 * 175.00549 * 14 11 10 39 39 H 1.09003 * 109.46993 * 299.99797 * 15 14 11 40 40 H 1.09000 * 109.47469 * 60.00284 * 15 14 11 41 41 H 0.97001 * 120.00173 * 180.02562 * 19 18 16 42 42 H 1.09001 * 115.56423 * 274.31002 * 24 8 7 43 43 H 1.08999 * 117.49698 * 214.97929 * 25 24 8 44 44 H 1.08997 * 117.49552 * 359.97332 * 25 24 8 45 45 H 1.08994 * 117.49575 * 107.50226 * 26 25 24 46 46 H 1.09001 * 117.49760 * 252.52404 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2256 -0.0825 -0.0047 6 7 3.5254 -1.1998 -0.0001 7 6 2.2066 -1.1917 0.0048 8 6 1.4538 -2.4972 0.0094 9 1 0.4025 -2.3112 -0.2102 10 7 2.0168 -3.3905 -1.0119 11 6 1.0203 -4.3728 -1.4592 12 1 0.0325 -3.9120 -1.4636 13 6 1.0204 -5.5697 -0.5062 14 6 1.3687 -4.8457 -2.8720 15 6 1.2470 -3.6728 -3.8469 16 6 1.5896 -4.1388 -5.2385 17 1 1.8669 -5.1683 -5.4103 18 6 1.5501 -3.2504 -6.2923 19 7 1.2129 -1.9966 -6.0829 20 14 1.9755 -3.8278 -8.0171 21 1 1.0398 -4.9072 -8.4226 22 1 1.8572 -2.6894 -8.9634 23 1 3.3671 -4.3457 -8.0366 24 6 1.5791 -3.1533 1.3859 25 6 1.0461 -2.3751 2.5906 26 6 0.2878 -3.6003 2.0758 27 1 -0.3634 -0.1050 1.0222 28 1 -0.3633 0.9379 -0.4202 29 1 -0.3634 -0.8327 -0.6021 30 1 1.6891 2.1422 0.0004 31 1 4.1736 2.0590 -0.0097 32 1 5.3046 -0.1288 -0.0083 33 1 2.3809 -2.8641 -1.7918 34 1 0.2813 -6.2988 -0.8384 35 1 2.0082 -6.0305 -0.5018 36 1 0.7722 -5.2328 0.5002 37 1 2.3902 -5.2256 -2.8863 38 1 0.6820 -5.6382 -3.1695 39 1 0.2254 -3.2930 -3.8325 40 1 1.9336 -2.8802 -3.5494 41 1 1.1848 -1.3716 -6.8243 42 1 2.4681 -3.7659 1.5358 43 1 1.5844 -2.4757 3.5329 44 1 0.6066 -1.3956 2.4024 45 1 0.3273 -4.5069 2.6796 46 1 -0.6504 -3.4267 1.5487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:46 Heat of formation + Delta-G solvation = 43.800060 kcal Electronic energy + Delta-G solvation = -23504.544784 eV Core-core repulsion = 20394.151371 eV Total energy + Delta-G solvation = -3110.393412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48652 -38.07052 -36.03180 -33.61646 -33.26469 -32.45960 -30.42961 -29.04422 -27.25515 -25.83755 -24.80342 -22.85979 -22.33967 -21.84970 -21.31494 -19.85991 -19.50842 -16.80996 -16.47959 -16.13266 -15.81746 -15.15799 -14.85591 -14.48352 -14.41793 -13.92115 -13.67460 -13.36551 -12.98744 -12.76469 -12.61181 -12.51282 -12.43647 -12.19313 -11.67062 -11.59007 -11.50772 -11.34733 -11.09529 -10.99528 -10.86144 -10.45482 -10.40867 -10.17949 -9.80035 -9.71267 -9.59268 -9.22794 -9.15891 -8.96203 -8.68427 -8.32904 -7.88883 -5.98148 -3.99893 1.19488 1.41195 3.35009 3.38836 3.41946 3.81751 3.91969 4.36457 4.46053 4.48014 4.77925 4.84877 4.97742 5.01413 5.08291 5.14811 5.27831 5.37570 5.44349 5.45082 5.50084 5.61598 5.67631 5.69883 5.77573 5.83733 5.93423 5.95850 6.01138 6.05375 6.15012 6.21265 6.28102 6.31650 6.42361 6.50543 6.61504 6.65777 6.82274 6.98731 7.14066 7.58916 7.65648 7.84670 7.97386 8.03819 8.22507 8.45560 9.06544 9.63992 11.13069 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.004934 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.158634 B = 5673.896989 C = 6894.967017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.079 4.079 4 C -0.175 4.175 5 C 0.092 3.908 6 N -0.451 5.451 7 C 0.137 3.863 8 C 0.166 3.834 9 H 0.062 0.938 10 N -0.665 5.665 11 C 0.085 3.915 12 H 0.034 0.966 13 C -0.143 4.143 14 C -0.115 4.115 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.116 4.116 25 C -0.186 4.186 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.356 0.644 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.011 0.989 40 H 0.014 0.986 41 H 0.260 0.740 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 4.684 17.508 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.195 4.195 5 C -0.066 4.066 6 N -0.159 5.159 7 C -0.002 4.002 8 C 0.056 3.944 9 H 0.079 0.921 10 N -0.301 5.301 11 C -0.024 4.024 12 H 0.052 0.948 13 C -0.201 4.201 14 C -0.153 4.153 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.135 4.135 25 C -0.224 4.224 26 C -0.217 4.217 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.155 3.619 17.837 18.201 hybrid contribution -0.678 1.339 -1.620 2.208 sum -0.522 4.958 16.217 16.966 Atomic orbital electron populations 1.20857 0.90582 1.03501 1.02293 1.20698 0.97415 0.93692 1.01506 1.21404 0.94214 0.97789 0.97061 1.22099 0.95223 0.99610 1.02578 1.22770 1.00303 0.87694 0.95786 1.67505 1.07440 1.30827 1.10119 1.21070 0.89964 0.93973 0.95197 1.20078 0.95121 0.86852 0.92390 0.92079 1.60468 1.35237 1.18114 1.16235 1.21664 0.92623 0.92709 0.95440 0.94778 1.21942 1.01341 0.97392 0.99440 1.21834 1.00880 1.00328 0.92251 1.19111 0.96547 0.92663 0.93226 1.21205 1.45827 0.95903 0.92669 0.92721 1.25015 0.95372 0.94910 0.99090 1.69953 1.48680 1.03270 1.31695 0.86670 0.79038 0.78117 0.84263 1.20272 1.21356 1.20209 1.22255 0.97921 1.02108 0.91226 1.22977 1.04710 0.96265 0.98438 1.23025 0.96217 0.98305 1.04186 0.91048 0.91259 0.90642 0.85156 0.85148 0.82982 0.82078 0.93492 0.92574 0.92417 0.92418 0.92769 0.97106 0.96828 0.93063 0.86780 0.89215 0.89282 0.88927 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.31 36.00 0.34 -0.99 16 2 C -0.13 -1.79 5.90 -104.48 -0.62 -2.40 16 3 C -0.08 -0.96 9.84 -39.28 -0.39 -1.34 16 4 C -0.18 -2.06 10.11 -39.44 -0.40 -2.46 16 5 C 0.09 1.25 11.18 -17.54 -0.20 1.05 16 6 N -0.45 -7.33 10.09 -9.47 -0.10 -7.42 16 7 C 0.14 2.12 5.01 -82.59 -0.41 1.71 16 8 C 0.17 2.54 2.35 -68.86 -0.16 2.38 16 9 H 0.06 0.93 4.61 -51.93 -0.24 0.69 16 10 N -0.67 -11.88 6.03 -100.95 -0.61 -12.49 16 11 C 0.09 1.51 2.65 -67.71 -0.18 1.33 16 12 H 0.03 0.62 7.43 -51.93 -0.39 0.24 16 13 C -0.14 -2.17 9.17 37.15 0.34 -1.82 16 14 C -0.12 -2.44 4.74 -26.73 -0.13 -2.56 16 15 C 0.02 0.56 4.80 -27.88 -0.13 0.43 16 16 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.12 -1.54 3.96 -90.58 -0.36 -1.90 16 25 C -0.19 -2.09 9.87 -26.73 -0.26 -2.36 16 26 C -0.18 -2.00 8.38 -26.69 -0.22 -2.22 16 27 H 0.07 0.69 7.12 -51.93 -0.37 0.32 16 28 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 29 H 0.07 0.96 6.26 -51.93 -0.33 0.63 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.36 7.38 6.08 -39.30 -0.24 7.14 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.78 4.71 -51.93 -0.24 0.54 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.01 0.37 6.43 -51.93 -0.33 0.04 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.98 7.06 -51.93 -0.37 0.61 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -31.24 363.26 -10.24 -41.48 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.53 Total: 7.21 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.19 Total: -24.81 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.03 Total: -46.34 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.24 -10.24 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.283 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds