Wall clock time and date at job start Fri Apr 10 2020 19:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38670 * 120.42351 * 2 1 4 4 C 1.38632 * 118.42473 * 180.24036 * 3 2 1 5 5 C 1.38232 * 119.15781 * 359.75030 * 4 3 2 6 6 N 1.31857 * 120.76304 * 0.02562 * 5 4 3 7 7 C 1.31879 * 121.72580 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.61688 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47205 * 192.54583 * 8 7 6 10 10 N 1.46903 * 109.46719 * 312.54665 * 8 7 6 11 11 C 1.46904 * 110.99861 * 204.99616 * 10 8 7 12 12 H 1.08996 * 109.46775 * 35.00447 * 11 10 8 13 13 C 1.52995 * 109.47228 * 275.00334 * 11 10 8 14 14 C 1.52998 * 109.46914 * 154.99938 * 11 10 8 15 15 C 1.52998 * 109.47323 * 295.00326 * 14 11 10 16 16 C 1.50704 * 109.47094 * 180.02562 * 15 14 11 17 17 H 1.07994 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47149 * 59.99773 * 20 18 16 22 22 H 1.48504 * 109.47154 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47044 * 299.99646 * 20 18 16 24 24 C 1.53001 * 109.47059 * 72.54437 * 8 7 6 25 25 C 1.53002 * 117.49917 * 60.00333 * 24 8 7 26 26 C 1.53007 * 60.03250 * 107.47588 * 25 24 8 27 27 H 1.08995 * 109.47481 * 264.13564 * 1 2 3 28 28 H 1.09000 * 109.46763 * 24.13332 * 1 2 3 29 29 H 1.08998 * 109.47264 * 144.12998 * 1 2 3 30 30 H 1.07998 * 120.78611 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.41968 * 179.72807 * 4 3 2 32 32 H 1.07993 * 119.61548 * 180.02562 * 5 4 3 33 33 H 1.00892 * 111.00441 * 328.95173 * 10 8 7 34 34 H 1.09007 * 109.46971 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47334 * 299.99770 * 13 11 10 36 36 H 1.08994 * 109.47436 * 60.00261 * 13 11 10 37 37 H 1.08997 * 109.46796 * 55.00574 * 14 11 10 38 38 H 1.09003 * 109.46849 * 175.00549 * 14 11 10 39 39 H 1.09003 * 109.46993 * 299.99797 * 15 14 11 40 40 H 1.09000 * 109.47469 * 60.00284 * 15 14 11 41 41 H 0.97001 * 120.00173 * 180.02562 * 19 18 16 42 42 H 1.09001 * 115.56423 * 274.31002 * 24 8 7 43 43 H 1.08999 * 117.49698 * 214.97929 * 25 24 8 44 44 H 1.08997 * 117.49552 * 359.97332 * 25 24 8 45 45 H 1.08994 * 117.49575 * 107.50226 * 26 25 24 46 46 H 1.09001 * 117.49760 * 252.52404 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 -0.0051 5 6 4.2256 -0.0825 -0.0047 6 7 3.5254 -1.1998 -0.0001 7 6 2.2066 -1.1917 0.0048 8 6 1.4538 -2.4972 0.0094 9 1 0.4025 -2.3112 -0.2102 10 7 2.0168 -3.3905 -1.0119 11 6 1.0203 -4.3728 -1.4592 12 1 0.0325 -3.9120 -1.4636 13 6 1.0204 -5.5697 -0.5062 14 6 1.3687 -4.8457 -2.8720 15 6 1.2470 -3.6728 -3.8469 16 6 1.5896 -4.1388 -5.2385 17 1 1.8669 -5.1683 -5.4103 18 6 1.5501 -3.2504 -6.2923 19 7 1.2129 -1.9966 -6.0829 20 14 1.9755 -3.8278 -8.0171 21 1 1.0398 -4.9072 -8.4226 22 1 1.8572 -2.6894 -8.9634 23 1 3.3671 -4.3457 -8.0366 24 6 1.5791 -3.1533 1.3859 25 6 1.0461 -2.3751 2.5906 26 6 0.2878 -3.6003 2.0758 27 1 -0.3634 -0.1050 1.0222 28 1 -0.3633 0.9379 -0.4202 29 1 -0.3634 -0.8327 -0.6021 30 1 1.6891 2.1422 0.0004 31 1 4.1736 2.0590 -0.0097 32 1 5.3046 -0.1288 -0.0083 33 1 2.3809 -2.8641 -1.7918 34 1 0.2813 -6.2988 -0.8384 35 1 2.0082 -6.0305 -0.5018 36 1 0.7722 -5.2328 0.5002 37 1 2.3902 -5.2256 -2.8863 38 1 0.6820 -5.6382 -3.1695 39 1 0.2254 -3.2930 -3.8325 40 1 1.9336 -2.8802 -3.5494 41 1 1.1848 -1.3716 -6.8243 42 1 2.4681 -3.7659 1.5358 43 1 1.5844 -2.4757 3.5329 44 1 0.6066 -1.3956 2.4024 45 1 0.3273 -4.5069 2.6796 46 1 -0.6504 -3.4267 1.5487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:45 Heat of formation + Delta-G solvation = 25.947956 kcal Electronic energy + Delta-G solvation = -23505.318909 eV Core-core repulsion = 20394.151371 eV Total energy + Delta-G solvation = -3111.167538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53037 -39.23841 -37.38434 -35.18343 -34.59018 -33.82064 -31.98413 -30.57660 -28.25497 -27.26287 -26.49998 -23.94811 -23.36273 -23.07684 -22.78448 -21.09649 -20.93140 -18.57561 -17.77873 -17.43932 -16.92744 -16.56023 -16.33080 -15.88717 -15.60991 -15.14455 -14.84547 -14.60688 -14.36441 -14.08460 -13.98017 -13.81894 -13.66605 -13.43706 -13.10220 -13.06602 -12.82143 -12.70707 -12.51014 -12.37163 -12.27456 -12.15268 -11.93062 -11.60223 -11.33540 -11.16434 -11.02693 -10.76704 -10.60012 -10.56021 -10.17676 -9.70125 -9.27635 -8.21497 -6.32305 0.17867 0.41967 1.37566 1.40836 1.48524 2.39394 2.81471 2.91439 3.10703 3.16282 3.44772 3.79218 3.92368 3.98385 4.04602 4.13007 4.13438 4.15887 4.25240 4.33180 4.46754 4.52687 4.57197 4.60689 4.71977 4.78117 4.80746 4.82254 4.87070 5.01211 5.03855 5.05234 5.12559 5.14555 5.22585 5.27122 5.28686 5.34383 5.38805 5.47820 5.55553 5.69337 5.82075 5.84907 6.23688 6.30303 6.42196 6.83466 7.17868 7.36649 8.89751 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.004934 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.158634 B = 5673.896989 C = 6894.967017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.144 4.144 3 C -0.084 4.084 4 C -0.169 4.169 5 C 0.072 3.928 6 N -0.487 5.487 7 C 0.111 3.889 8 C 0.168 3.832 9 H 0.059 0.941 10 N -0.670 5.670 11 C 0.091 3.909 12 H 0.028 0.972 13 C -0.134 4.134 14 C -0.103 4.103 15 C 0.032 3.968 16 C -0.544 4.544 17 H 0.058 0.942 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.132 4.132 25 C -0.173 4.173 26 C -0.167 4.167 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.171 0.829 33 H 0.334 0.666 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.059 0.941 39 H -0.015 1.015 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 4.914 18.229 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.146 4.146 3 C -0.110 4.110 4 C -0.188 4.188 5 C -0.085 4.085 6 N -0.195 5.195 7 C -0.027 4.027 8 C 0.058 3.942 9 H 0.076 0.924 10 N -0.303 5.303 11 C -0.018 4.018 12 H 0.046 0.954 13 C -0.191 4.191 14 C -0.140 4.140 15 C -0.005 4.005 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.152 4.152 25 C -0.211 4.211 26 C -0.204 4.204 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.188 0.812 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.003 0.997 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.143 3.828 18.587 18.977 hybrid contribution -0.557 1.351 -1.829 2.341 sum -0.700 5.179 16.757 17.553 Atomic orbital electron populations 1.20872 0.89356 1.03415 1.03282 1.20994 0.98525 0.93780 1.01335 1.21835 0.94635 0.98433 0.96092 1.22472 0.95487 1.00169 1.00679 1.23220 1.01325 0.87977 0.96022 1.67427 1.08139 1.32548 1.11390 1.21166 0.90121 0.94624 0.96763 1.20108 0.94722 0.86924 0.92437 0.92354 1.60568 1.35484 1.18555 1.15647 1.21596 0.92204 0.93874 0.94134 0.95391 1.21859 1.01568 0.96154 0.99534 1.21661 1.00603 0.98416 0.93359 1.18946 0.94079 0.93692 0.93801 1.21653 1.46111 0.96261 0.94136 0.92407 1.25950 0.94993 0.94927 1.03709 1.70090 1.49448 1.04502 1.33115 0.85535 0.79152 0.77949 0.78639 1.19060 1.20719 1.19373 1.22033 0.98624 1.03516 0.90986 1.23010 1.03977 0.96458 0.97645 1.23107 0.95102 0.98909 1.03284 0.89035 0.89852 0.92552 0.82191 0.81790 0.81203 0.84589 0.92149 0.93010 0.90697 0.93106 0.92204 0.99710 0.99215 0.92869 0.88457 0.88167 0.88978 0.87403 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 9.31 71.24 0.66 -1.85 16 2 C -0.14 -3.90 5.90 -19.77 -0.12 -4.02 16 3 C -0.08 -1.92 9.84 22.47 0.22 -1.70 16 4 C -0.17 -3.72 10.11 22.36 0.23 -3.49 16 5 C 0.07 1.94 11.18 84.69 0.95 2.88 16 6 N -0.49 -16.28 10.09 -183.88 -1.86 -18.13 16 7 C 0.11 3.54 5.01 42.54 0.21 3.75 16 8 C 0.17 5.28 2.35 44.17 0.10 5.38 16 9 H 0.06 1.83 4.61 -2.39 -0.01 1.82 16 10 N -0.67 -24.99 6.03 -473.31 -2.85 -27.84 16 11 C 0.09 3.32 2.65 44.91 0.12 3.44 16 12 H 0.03 1.05 7.43 -2.39 -0.02 1.03 16 13 C -0.13 -3.92 9.17 71.98 0.66 -3.26 16 14 C -0.10 -4.47 4.74 30.59 0.15 -4.32 16 15 C 0.03 1.74 4.80 29.85 0.14 1.88 16 16 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 20 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.13 -3.49 3.96 -10.77 -0.04 -3.53 16 25 C -0.17 -3.65 9.87 30.60 0.30 -3.34 16 26 C -0.17 -3.42 8.38 30.62 0.26 -3.16 16 27 H 0.09 1.63 7.12 -2.39 -0.02 1.61 16 28 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 29 H 0.06 1.47 6.26 -2.39 -0.01 1.46 16 30 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.33 14.81 6.08 -89.70 -0.55 14.27 16 34 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.93 4.71 -2.39 -0.01 1.92 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 39 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H -0.01 -0.61 6.43 -2.39 -0.02 -0.62 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.09 1.88 7.06 -2.39 -0.02 1.86 16 45 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 Total: -1.00 -69.27 363.26 2.55 -66.71 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.41 Total: 31.76 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 4.54 Total: -42.46 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.43 Total: -103.34 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.27 2.55 -66.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.662 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds