Wall clock time and date at job start Fri Apr 10 2020 19:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38666 * 120.41735 * 2 1 4 4 C 1.38632 * 118.41795 * 179.75284 * 3 2 1 5 5 C 1.38215 * 119.16160 * 0.51207 * 4 3 2 6 6 C 1.50701 * 119.61902 * 179.75178 * 5 4 3 7 7 C 1.53002 * 115.54782 * 74.44152 * 6 5 4 8 8 N 1.46898 * 109.47136 * 65.73474 * 7 6 5 9 9 C 1.46897 * 111.00280 * 182.54334 * 8 7 6 10 10 H 1.09004 * 109.47169 * 325.00138 * 9 8 7 11 11 C 1.53005 * 109.46978 * 84.99641 * 9 8 7 12 12 C 1.52996 * 109.47750 * 205.00084 * 9 8 7 13 13 C 1.53001 * 109.47226 * 64.99951 * 12 9 8 14 14 C 1.50696 * 109.47350 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99638 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00292 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99783 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47049 * 90.00225 * 18 16 14 20 20 H 1.48507 * 109.47085 * 210.00404 * 18 16 14 21 21 H 1.48500 * 109.47116 * 329.99826 * 18 16 14 22 22 C 1.53000 * 117.50024 * 220.10901 * 6 5 4 23 23 C 1.53000 * 117.50007 * 288.76936 * 6 5 4 24 24 N 1.31859 * 120.76573 * 359.47683 * 5 4 3 25 25 C 1.31889 * 121.72107 * 0.27635 * 24 5 4 26 26 H 1.09007 * 109.47012 * 269.97437 * 1 2 3 27 27 H 1.08995 * 109.47209 * 29.97475 * 1 2 3 28 28 H 1.09000 * 109.47246 * 149.97972 * 1 2 3 29 29 H 1.08004 * 120.79193 * 0.05357 * 3 2 1 30 30 H 1.08004 * 120.41443 * 180.28562 * 4 3 2 31 31 H 1.08993 * 109.47535 * 305.73369 * 7 6 5 32 32 H 1.09005 * 109.46992 * 185.72917 * 7 6 5 33 33 H 1.00906 * 111.00105 * 58.59221 * 8 7 6 34 34 H 1.09000 * 109.47266 * 180.02562 * 11 9 8 35 35 H 1.08995 * 109.47235 * 300.00466 * 11 9 8 36 36 H 1.08996 * 109.46767 * 60.00634 * 11 9 8 37 37 H 1.09002 * 109.47575 * 185.00101 * 12 9 8 38 38 H 1.08997 * 109.46803 * 304.99713 * 12 9 8 39 39 H 1.09002 * 109.46966 * 300.00523 * 13 12 9 40 40 H 1.08996 * 109.46915 * 60.00268 * 13 12 9 41 41 H 0.97003 * 119.99594 * 179.97438 * 17 16 14 42 42 H 1.09002 * 117.50378 * 215.00314 * 22 6 5 43 43 H 1.08999 * 117.50042 * 0.02562 * 22 6 5 44 44 H 1.08993 * 117.49790 * 359.97438 * 23 6 5 45 45 H 1.08999 * 117.49841 * 144.97228 * 23 6 5 46 46 H 1.07999 * 119.61563 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0053 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1468 -0.0005 7 6 6.4061 0.1885 1.3310 8 7 6.0596 -0.8344 2.3268 9 6 6.6419 -0.5127 3.6365 10 1 7.6125 -0.0369 3.4957 11 6 5.7109 0.4407 4.3883 12 6 6.8173 -1.7987 4.4466 13 6 7.8441 -2.6996 3.7575 14 6 8.0163 -3.9666 4.5550 15 1 7.4497 -4.1146 5.4625 16 6 8.8964 -4.9372 4.1257 17 7 9.5860 -4.7571 3.0203 18 14 9.1094 -6.5079 5.1140 19 1 8.1404 -7.5275 4.6378 20 1 10.4925 -7.0194 4.9386 21 1 8.8647 -6.2256 6.5512 22 6 6.3927 -1.2099 -0.8798 23 6 6.4560 0.2653 -1.2834 24 7 3.5255 -1.1996 -0.0005 25 6 2.2066 -1.1916 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6890 2.1423 0.0009 30 1 4.1735 2.0592 0.0101 31 1 6.0628 1.1634 1.6771 32 1 7.4873 0.2113 1.1948 33 1 6.3472 -1.7512 2.0186 34 1 6.1431 0.6798 5.3600 35 1 5.5860 1.3569 3.8112 36 1 4.7404 -0.0351 4.5292 37 1 7.1656 -1.5518 5.4495 38 1 5.8623 -2.3200 4.5119 39 1 7.4957 -2.9465 2.7545 40 1 8.7990 -2.1783 3.6923 41 1 10.2055 -5.4398 2.7185 42 1 7.3087 -1.6704 -0.5097 43 1 5.7390 -1.8624 -1.4586 44 1 5.8438 0.5827 -2.1275 45 1 7.4134 0.7757 -1.1788 46 1 1.6672 -2.1272 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:56 Heat of formation + Delta-G solvation = 36.145537 kcal Electronic energy + Delta-G solvation = -22778.541958 eV Core-core repulsion = 19667.816621 eV Total energy + Delta-G solvation = -3110.725337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42479 -38.04796 -36.34817 -33.34407 -33.06771 -31.78960 -31.02864 -29.09448 -27.49773 -25.68932 -24.63255 -23.56200 -22.54404 -22.00715 -21.28621 -19.70241 -19.30209 -16.78919 -16.37885 -16.16990 -15.28681 -15.14640 -14.92620 -14.57075 -14.44036 -14.08418 -13.95631 -13.17719 -12.99446 -12.75125 -12.69162 -12.53320 -12.36401 -12.28084 -12.06769 -11.67098 -11.40762 -11.34898 -11.22857 -11.00892 -10.88518 -10.45376 -10.42450 -10.17597 -9.90648 -9.72000 -9.69500 -9.22349 -9.19570 -8.98344 -8.66277 -8.31488 -7.84405 -5.96822 -3.98387 1.15399 1.35748 3.34825 3.40713 3.44275 3.68589 3.85836 4.31206 4.49321 4.59887 4.67993 4.78753 4.87753 4.95796 5.03369 5.17248 5.29071 5.39171 5.40076 5.41620 5.48997 5.56828 5.68915 5.71722 5.76419 5.79310 5.89534 5.92815 5.98648 6.04479 6.14118 6.21533 6.22811 6.26038 6.32874 6.42104 6.56395 6.60647 6.77971 6.97171 7.14557 7.60877 7.67420 7.86132 8.00035 8.06951 8.18307 8.47028 9.08064 9.65466 11.14445 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.003613 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.309899 B = 7748.439870 C = 7848.423323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.152 4.152 3 C -0.079 4.079 4 C -0.162 4.162 5 C 0.188 3.812 6 C -0.080 4.080 7 C 0.104 3.896 8 N -0.680 5.680 9 C 0.083 3.917 10 H 0.036 0.964 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.150 4.150 23 C -0.166 4.166 24 N -0.460 5.460 25 C 0.102 3.898 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.356 0.644 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.259 0.741 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 14.222 -8.860 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.154 4.154 3 C -0.105 4.105 4 C -0.182 4.182 5 C 0.050 3.950 6 C -0.081 4.081 7 C -0.026 4.026 8 N -0.314 5.314 9 C -0.027 4.027 10 H 0.054 0.946 11 C -0.192 4.192 12 C -0.151 4.151 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.187 4.187 23 C -0.205 4.205 24 N -0.167 5.167 25 C -0.055 4.055 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.178 0.822 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.028 13.599 -8.807 21.431 hybrid contribution 0.642 -0.278 0.401 0.806 sum -13.386 13.320 -8.406 20.671 Atomic orbital electron populations 1.20676 0.90593 1.02697 1.02418 1.20874 0.97311 0.94434 1.02785 1.21367 0.93909 0.97905 0.97342 1.21811 0.94835 0.99057 1.02465 1.19994 0.93643 0.88045 0.93306 1.19975 0.88742 1.06754 0.92621 1.21377 0.96056 0.96268 0.88901 1.60479 1.63272 1.05963 1.01727 1.21580 0.94586 0.96950 0.89538 0.94646 1.21774 1.00205 0.98392 0.98844 1.21808 1.00875 0.94138 0.98288 1.19114 0.93060 0.93694 0.95696 1.21237 1.23151 1.02197 1.09015 0.92748 1.25013 0.95820 0.98448 0.95125 1.69963 1.26710 1.34553 1.22274 0.86612 0.77250 0.83726 0.80525 1.20647 1.21301 1.19931 1.22972 1.02535 0.91295 1.01878 1.23090 1.01618 0.99239 0.96516 1.67446 1.07612 1.31082 1.10533 1.22644 0.89838 0.97269 0.95762 0.91096 0.91720 0.91372 0.85353 0.85262 0.91327 0.94671 0.82218 0.93150 0.94002 0.92590 0.92892 0.92556 0.96550 0.97070 0.93093 0.88028 0.88281 0.88989 0.88250 0.83166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.04 36.01 0.36 -0.43 16 2 C -0.15 -1.63 5.90 -104.48 -0.62 -2.25 16 3 C -0.08 -0.84 9.86 -39.28 -0.39 -1.22 16 4 C -0.16 -1.93 9.78 -39.44 -0.39 -2.32 16 5 C 0.19 2.67 5.79 -82.59 -0.48 2.19 16 6 C -0.08 -1.11 1.89 -155.66 -0.29 -1.40 16 7 C 0.10 1.56 5.29 -3.82 -0.02 1.54 16 8 N -0.68 -12.05 6.21 -106.73 -0.66 -12.72 16 9 C 0.08 1.50 2.65 -67.71 -0.18 1.32 16 10 H 0.04 0.65 7.83 -51.93 -0.41 0.25 16 11 C -0.13 -2.08 9.41 37.16 0.35 -1.73 16 12 C -0.11 -2.42 4.74 -26.73 -0.13 -2.54 16 13 C 0.02 0.56 4.80 -27.88 -0.13 0.42 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 22 C -0.15 -2.11 9.79 -26.69 -0.26 -2.37 16 23 C -0.17 -1.93 9.92 -26.69 -0.26 -2.20 16 24 N -0.46 -7.08 10.05 -9.48 -0.10 -7.17 16 25 C 0.10 1.31 10.86 -17.55 -0.19 1.12 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 31 H 0.07 0.96 7.38 -51.93 -0.38 0.57 16 32 H 0.04 0.53 8.05 -51.93 -0.42 0.12 16 33 H 0.36 7.18 6.50 -39.29 -0.26 6.93 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.59 7.42 -51.93 -0.39 0.20 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.45 6.43 -51.93 -0.33 0.11 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.10 1.44 8.12 -51.93 -0.42 1.01 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -31.38 377.12 -10.46 -41.84 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.06 Total: 5.24 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.04 Total: -23.55 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.02 Total: -46.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.38 -10.46 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.981 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds