Wall clock time and date at job start Fri Apr 10 2020 19:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38666 * 120.41735 * 2 1 4 4 C 1.38632 * 118.41795 * 179.75284 * 3 2 1 5 5 C 1.38215 * 119.16160 * 0.51207 * 4 3 2 6 6 C 1.50701 * 119.61902 * 179.75178 * 5 4 3 7 7 C 1.53002 * 115.54782 * 74.44152 * 6 5 4 8 8 N 1.46898 * 109.47136 * 65.73474 * 7 6 5 9 9 C 1.46897 * 111.00280 * 182.54334 * 8 7 6 10 10 H 1.09004 * 109.47169 * 325.00138 * 9 8 7 11 11 C 1.53005 * 109.46978 * 84.99641 * 9 8 7 12 12 C 1.52996 * 109.47750 * 205.00084 * 9 8 7 13 13 C 1.53001 * 109.47226 * 64.99951 * 12 9 8 14 14 C 1.50696 * 109.47350 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99638 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00292 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99783 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47049 * 90.00225 * 18 16 14 20 20 H 1.48507 * 109.47085 * 210.00404 * 18 16 14 21 21 H 1.48500 * 109.47116 * 329.99826 * 18 16 14 22 22 C 1.53000 * 117.50024 * 220.10901 * 6 5 4 23 23 C 1.53000 * 117.50007 * 288.76936 * 6 5 4 24 24 N 1.31859 * 120.76573 * 359.47683 * 5 4 3 25 25 C 1.31889 * 121.72107 * 0.27635 * 24 5 4 26 26 H 1.09007 * 109.47012 * 269.97437 * 1 2 3 27 27 H 1.08995 * 109.47209 * 29.97475 * 1 2 3 28 28 H 1.09000 * 109.47246 * 149.97972 * 1 2 3 29 29 H 1.08004 * 120.79193 * 0.05357 * 3 2 1 30 30 H 1.08004 * 120.41443 * 180.28562 * 4 3 2 31 31 H 1.08993 * 109.47535 * 305.73369 * 7 6 5 32 32 H 1.09005 * 109.46992 * 185.72917 * 7 6 5 33 33 H 1.00906 * 111.00105 * 58.59221 * 8 7 6 34 34 H 1.09000 * 109.47266 * 180.02562 * 11 9 8 35 35 H 1.08995 * 109.47235 * 300.00466 * 11 9 8 36 36 H 1.08996 * 109.46767 * 60.00634 * 11 9 8 37 37 H 1.09002 * 109.47575 * 185.00101 * 12 9 8 38 38 H 1.08997 * 109.46803 * 304.99713 * 12 9 8 39 39 H 1.09002 * 109.46966 * 300.00523 * 13 12 9 40 40 H 1.08996 * 109.46915 * 60.00268 * 13 12 9 41 41 H 0.97003 * 119.99594 * 179.97438 * 17 16 14 42 42 H 1.09002 * 117.50378 * 215.00314 * 22 6 5 43 43 H 1.08999 * 117.50042 * 0.02562 * 22 6 5 44 44 H 1.08993 * 117.49790 * 359.97438 * 23 6 5 45 45 H 1.08999 * 117.49841 * 144.97228 * 23 6 5 46 46 H 1.07999 * 119.61563 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0053 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1468 -0.0005 7 6 6.4061 0.1885 1.3310 8 7 6.0596 -0.8344 2.3268 9 6 6.6419 -0.5127 3.6365 10 1 7.6125 -0.0369 3.4957 11 6 5.7109 0.4407 4.3883 12 6 6.8173 -1.7987 4.4466 13 6 7.8441 -2.6996 3.7575 14 6 8.0163 -3.9666 4.5550 15 1 7.4497 -4.1146 5.4625 16 6 8.8964 -4.9372 4.1257 17 7 9.5860 -4.7571 3.0203 18 14 9.1094 -6.5079 5.1140 19 1 8.1404 -7.5275 4.6378 20 1 10.4925 -7.0194 4.9386 21 1 8.8647 -6.2256 6.5512 22 6 6.3927 -1.2099 -0.8798 23 6 6.4560 0.2653 -1.2834 24 7 3.5255 -1.1996 -0.0005 25 6 2.2066 -1.1916 -0.0005 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6890 2.1423 0.0009 30 1 4.1735 2.0592 0.0101 31 1 6.0628 1.1634 1.6771 32 1 7.4873 0.2113 1.1948 33 1 6.3472 -1.7512 2.0186 34 1 6.1431 0.6798 5.3600 35 1 5.5860 1.3569 3.8112 36 1 4.7404 -0.0351 4.5292 37 1 7.1656 -1.5518 5.4495 38 1 5.8623 -2.3200 4.5119 39 1 7.4957 -2.9465 2.7545 40 1 8.7990 -2.1783 3.6923 41 1 10.2055 -5.4398 2.7185 42 1 7.3087 -1.6704 -0.5097 43 1 5.7390 -1.8624 -1.4586 44 1 5.8438 0.5827 -2.1275 45 1 7.4134 0.7757 -1.1788 46 1 1.6672 -2.1272 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:55 Heat of formation + Delta-G solvation = 18.542139 kcal Electronic energy + Delta-G solvation = -22779.305299 eV Core-core repulsion = 19667.816621 eV Total energy + Delta-G solvation = -3111.488678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36133 -39.22394 -37.74167 -35.17587 -34.16622 -32.74612 -32.63343 -30.74998 -28.30081 -27.26558 -26.23547 -24.52908 -23.46621 -23.25737 -22.91652 -21.06966 -20.55416 -18.57171 -17.69837 -17.26999 -16.62438 -16.51832 -16.32227 -15.84947 -15.66578 -15.25949 -14.87370 -14.52340 -14.39477 -14.16130 -13.92365 -13.62585 -13.47704 -13.30346 -13.20365 -13.08659 -12.97166 -12.84950 -12.57858 -12.42324 -12.36300 -12.17453 -11.88316 -11.64694 -11.38517 -11.27727 -11.05755 -10.89916 -10.60335 -10.55572 -10.14214 -9.55969 -9.25263 -8.20938 -6.31567 0.25683 0.49227 1.37865 1.39524 1.50318 2.39781 2.63174 2.92009 3.11804 3.27775 3.44781 3.78969 3.85389 4.00925 4.02614 4.07513 4.16960 4.21857 4.28425 4.35543 4.49133 4.55368 4.64288 4.69811 4.73200 4.76112 4.83162 4.86664 4.94680 4.96932 4.99270 5.03459 5.04076 5.06578 5.20514 5.22069 5.25004 5.33050 5.42255 5.44244 5.51699 5.69626 5.82913 5.92324 6.24131 6.29069 6.44619 6.84339 7.25593 7.37272 8.90444 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.003613 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.309899 B = 7748.439870 C = 7848.423323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.147 4.147 3 C -0.080 4.080 4 C -0.163 4.163 5 C 0.163 3.837 6 C -0.084 4.084 7 C 0.106 3.894 8 N -0.683 5.683 9 C 0.087 3.913 10 H 0.031 0.969 11 C -0.123 4.123 12 C -0.100 4.100 13 C 0.031 3.969 14 C -0.544 4.544 15 H 0.056 0.944 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.171 4.171 23 C -0.134 4.134 24 N -0.501 5.501 25 C 0.078 3.922 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.336 0.664 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.048 0.952 39 H -0.005 1.005 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.575 15.915 -8.442 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.149 4.149 3 C -0.105 4.105 4 C -0.183 4.183 5 C 0.026 3.974 6 C -0.085 4.085 7 C -0.024 4.024 8 N -0.315 5.315 9 C -0.022 4.022 10 H 0.049 0.951 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.007 4.007 14 C -0.582 4.582 15 H 0.075 0.925 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.208 4.208 23 C -0.172 4.172 24 N -0.209 5.209 25 C -0.079 4.079 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.179 0.821 30 H 0.167 0.833 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.156 0.844 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.013 0.987 40 H 0.003 0.997 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.623 15.316 -8.383 23.429 hybrid contribution 1.103 -0.807 0.233 1.387 sum -14.520 14.509 -8.149 22.085 Atomic orbital electron populations 1.20740 0.88127 1.04058 1.03189 1.21225 0.99054 0.93746 1.00839 1.21790 0.93521 0.99167 0.96057 1.22051 0.95799 0.98767 1.01701 1.20075 0.93458 0.88803 0.95079 1.19969 0.89310 1.06624 0.92618 1.21434 0.95888 0.96046 0.89013 1.60581 1.63049 1.05620 1.02278 1.21533 0.95390 0.95627 0.89698 0.95137 1.21671 0.98994 0.98121 0.99345 1.21620 0.98711 0.94898 0.98558 1.18959 0.93017 0.93755 0.94927 1.21675 1.23505 1.03531 1.09476 0.92547 1.25949 0.95339 1.02153 0.96203 1.70095 1.27245 1.35860 1.23824 0.85480 0.77452 0.79072 0.79249 1.19907 1.20581 1.18785 1.22827 1.01806 0.92794 1.03389 1.23157 1.01983 0.96478 0.95608 1.67350 1.09088 1.32468 1.11945 1.22946 0.89419 0.98821 0.96747 0.90435 0.89844 0.90609 0.82061 0.83271 0.89604 0.95309 0.84449 0.91766 0.92126 0.93188 0.92394 0.93365 0.98670 0.99665 0.92841 0.90132 0.89364 0.87367 0.86745 0.82407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.04 71.24 0.72 -0.55 16 2 C -0.15 -2.87 5.90 -19.78 -0.12 -2.99 16 3 C -0.08 -1.46 9.86 22.47 0.22 -1.23 16 4 C -0.16 -3.57 9.78 22.36 0.22 -3.35 16 5 C 0.16 4.58 5.79 42.55 0.25 4.83 16 6 C -0.08 -2.34 1.89 -52.93 -0.10 -2.44 16 7 C 0.11 3.16 5.29 86.30 0.46 3.62 16 8 N -0.68 -24.82 6.21 -491.57 -3.05 -27.87 16 9 C 0.09 3.15 2.65 44.92 0.12 3.27 16 10 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 11 C -0.12 -3.61 9.41 71.98 0.68 -2.93 16 12 C -0.10 -4.36 4.74 30.59 0.15 -4.22 16 13 C 0.03 1.66 4.80 29.85 0.14 1.81 16 14 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 0.08 5.46 84.65 0.46 0.55 16 17 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 18 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 22 C -0.17 -5.10 9.79 30.62 0.30 -4.81 16 23 C -0.13 -3.01 9.92 30.62 0.30 -2.71 16 24 N -0.50 -15.77 10.05 -183.89 -1.85 -17.62 16 25 C 0.08 1.98 10.86 84.67 0.92 2.90 16 26 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 29 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.09 2.25 7.38 -2.39 -0.02 2.24 16 32 H 0.03 0.89 8.05 -2.38 -0.02 0.87 16 33 H 0.34 14.45 6.50 -89.69 -0.58 13.87 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.55 7.42 -2.39 -0.02 1.53 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.00 -0.29 6.43 -2.39 -0.02 -0.30 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.09 2.77 8.12 -2.39 -0.02 2.75 16 44 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 45 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -69.72 377.12 2.71 -67.01 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.35 Total: 28.43 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 4.95 Total: -40.11 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -4.62 Total: -102.94 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.72 2.71 -67.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.549 kcal (2) G-P(sol) polarization free energy of solvation -69.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds