Wall clock time and date at job start Fri Apr 10 2020 19:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38221 * 120.42092 * 2 1 4 4 N 1.31852 * 120.76427 * 180.27085 * 3 2 1 5 5 C 1.31876 * 121.72694 * 359.74352 * 4 3 2 6 6 C 1.38185 * 120.76749 * 359.97438 * 5 4 3 7 7 C 1.38636 * 120.42037 * 179.74017 * 2 1 3 8 8 C 1.50703 * 120.78789 * 0.02562 * 7 2 1 9 9 H 1.09007 * 109.47037 * 327.26654 * 8 7 2 10 10 N 1.46901 * 109.46932 * 207.26783 * 8 7 2 11 11 C 1.46900 * 110.99890 * 81.27369 * 10 8 7 12 12 H 1.08998 * 109.47236 * 317.78757 * 11 10 8 13 13 C 1.53000 * 109.46968 * 77.79198 * 11 10 8 14 14 C 1.53002 * 109.46949 * 197.78936 * 11 10 8 15 15 C 1.52998 * 109.47063 * 65.00176 * 14 11 10 16 16 C 1.50701 * 109.47287 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00275 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00434 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00024 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47003 * 90.00412 * 20 18 16 22 22 H 1.48497 * 109.47678 * 210.00685 * 20 18 16 23 23 H 1.48497 * 109.47257 * 330.00992 * 20 18 16 24 24 C 1.53002 * 109.47440 * 87.26508 * 8 7 2 25 25 C 1.52997 * 117.50190 * 244.43267 * 24 8 7 26 26 C 1.52997 * 117.49891 * 175.77227 * 24 8 7 27 27 H 1.09005 * 109.46710 * 270.25998 * 1 2 3 28 28 H 1.09002 * 109.47360 * 30.26382 * 1 2 3 29 29 H 1.08997 * 109.47255 * 150.26619 * 1 2 3 30 30 H 1.08008 * 119.61629 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.62159 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.42041 * 180.02562 * 6 5 4 33 33 H 1.00894 * 110.99882 * 317.31611 * 10 8 7 34 34 H 1.08995 * 109.47051 * 294.57034 * 13 11 10 35 35 H 1.09000 * 109.47407 * 54.57753 * 13 11 10 36 36 H 1.09001 * 109.46951 * 174.57242 * 13 11 10 37 37 H 1.08999 * 109.47112 * 304.99971 * 14 11 10 38 38 H 1.08999 * 109.47180 * 185.00204 * 14 11 10 39 39 H 1.08999 * 109.47324 * 59.99924 * 15 14 11 40 40 H 1.08999 * 109.47146 * 300.00049 * 15 14 11 41 41 H 0.96999 * 120.00427 * 179.97438 * 19 18 16 42 42 H 1.09002 * 115.54334 * 30.10126 * 24 8 7 43 43 H 1.09011 * 117.49514 * 359.97438 * 25 24 8 44 44 H 1.08992 * 117.50189 * 145.01711 * 25 24 8 45 45 H 1.09002 * 117.49413 * 214.98093 * 26 24 8 46 46 H 1.08999 * 117.50071 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5253 1.1998 -0.0054 5 6 4.2256 0.0823 -0.0059 6 6 3.5948 -1.1471 -0.0002 7 6 2.2089 -1.1955 0.0054 8 6 1.4831 -2.5162 0.0108 9 1 0.5503 -2.4159 0.5658 10 7 2.3260 -3.5355 0.6501 11 6 2.2318 -3.4541 2.1138 12 1 2.2511 -2.4086 2.4216 13 6 0.9236 -4.0981 2.5772 14 6 3.4148 -4.1928 2.7429 15 6 4.7159 -3.4741 2.3804 16 6 5.8812 -4.2021 2.9995 17 1 5.7108 -5.0884 3.5925 18 6 7.1648 -3.7359 2.8097 19 7 8.1817 -4.3709 3.3503 20 14 7.4596 -2.2024 1.7846 21 1 7.4205 -1.0052 2.6624 22 1 8.7892 -2.2927 1.1295 23 1 6.4032 -2.0899 0.7470 24 6 1.1777 -2.9363 -1.4283 25 6 -0.2929 -3.0286 -1.8404 26 6 0.5284 -4.3051 -1.6420 27 1 -0.3633 0.0047 1.0277 28 1 -0.3634 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5097 30 1 1.6674 2.1276 0.0004 31 1 5.3046 0.1285 -0.0099 32 1 4.1737 -2.0588 -0.0002 33 1 3.2842 -3.4559 0.3444 34 1 0.0804 -3.5145 2.2077 35 1 0.8608 -5.1142 2.1877 36 1 0.8976 -4.1245 3.6666 37 1 3.4470 -5.2149 2.3656 38 1 3.2983 -4.2091 3.8265 39 1 4.6836 -2.4520 2.7577 40 1 4.8323 -3.4579 1.2968 41 1 9.0848 -4.0432 3.2165 42 1 1.8902 -2.5944 -2.1790 43 1 -1.0428 -2.7905 -1.0859 44 1 -0.5478 -2.7480 -2.8622 45 1 0.8135 -4.8636 -2.5336 46 1 0.3192 -4.9065 -0.7574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:13 Heat of formation + Delta-G solvation = 44.445411 kcal Electronic energy + Delta-G solvation = -23923.106880 eV Core-core repulsion = 20812.741453 eV Total energy + Delta-G solvation = -3110.365428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63887 -38.27930 -36.44683 -34.00876 -33.09677 -32.33966 -30.70139 -29.33341 -27.29780 -26.37543 -25.11198 -22.84552 -22.39567 -21.85203 -21.11331 -20.14668 -19.60593 -17.27821 -16.77548 -16.50444 -15.60770 -15.30690 -14.97477 -14.74605 -14.41154 -14.14517 -13.77687 -13.43352 -13.36973 -12.90096 -12.82292 -12.76988 -12.53191 -12.30535 -12.00607 -11.76821 -11.59171 -11.50282 -11.39322 -11.10810 -10.97163 -10.73148 -10.37336 -10.14484 -10.01046 -9.80876 -9.47737 -9.40887 -9.34446 -9.19367 -8.85470 -8.56809 -8.27853 -6.06710 -4.04741 1.16643 1.28455 3.26748 3.31978 3.35454 3.68176 3.81697 4.36555 4.40655 4.46261 4.50652 4.75999 4.83717 4.90776 5.00197 5.02746 5.13549 5.26138 5.26529 5.36735 5.44044 5.47566 5.49306 5.54915 5.63314 5.65370 5.74941 5.77344 5.88867 5.92404 6.04531 6.05099 6.13755 6.17956 6.23030 6.26447 6.36388 6.45036 6.68383 6.76635 6.82218 7.21672 7.23798 7.44540 7.62842 7.76490 8.03237 8.51763 8.98789 9.55519 11.06786 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.006189 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.458429 B = 4523.176145 C = 5662.578913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C 0.092 3.908 4 N -0.485 5.485 5 C 0.097 3.903 6 C -0.162 4.162 7 C -0.064 4.064 8 C 0.154 3.846 9 H 0.092 0.908 10 N -0.672 5.672 11 C 0.079 3.921 12 H 0.035 0.965 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.012 4.012 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.876 3.124 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.139 4.139 25 C -0.184 4.184 26 C -0.152 4.152 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.140 0.860 33 H 0.350 0.650 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.007 0.993 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.383 6.493 -9.689 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.135 4.135 3 C -0.065 4.065 4 N -0.194 5.194 5 C -0.059 4.059 6 C -0.182 4.182 7 C -0.074 4.074 8 C 0.044 3.956 9 H 0.110 0.890 10 N -0.306 5.306 11 C -0.030 4.030 12 H 0.053 0.947 13 C -0.195 4.195 14 C -0.142 4.142 15 C -0.049 4.049 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.542 5.542 20 Si 0.703 3.297 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.188 1.188 24 C -0.158 4.158 25 C -0.221 4.221 26 C -0.189 4.189 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.174 6.768 -9.706 21.687 hybrid contribution 0.670 0.906 -0.265 1.157 sum -17.505 7.674 -9.971 21.557 Atomic orbital electron populations 1.20810 0.90539 1.03368 1.02447 1.20726 0.97341 0.93559 1.01848 1.22617 0.90061 0.97203 0.96617 1.67656 1.08257 1.31444 1.12018 1.22710 1.00383 0.87616 0.95232 1.22189 0.94776 1.00357 1.00829 1.21057 0.94012 0.96458 0.95884 1.20171 0.96556 0.85174 0.93737 0.89002 1.60792 1.15316 1.47745 1.06772 1.21656 0.96497 0.98074 0.86786 0.94699 1.21813 0.96178 1.01229 1.00322 1.21620 0.93239 0.99713 0.99600 1.19610 0.93695 0.95673 0.95905 1.21114 0.89695 1.12615 1.32186 0.91006 1.25035 0.96187 0.96791 0.95413 1.69909 0.99022 1.40254 1.44966 0.86857 0.77598 0.84011 0.81192 1.20325 1.21392 1.18841 1.22086 0.95585 1.02091 0.96014 1.23034 0.93507 1.03523 1.02042 1.22794 1.02547 0.90358 1.03194 0.91150 0.91332 0.90622 0.83187 0.83024 0.84264 0.82548 0.93974 0.91925 0.92619 0.91693 0.92123 0.97478 0.97041 0.92747 0.88303 0.88982 0.89083 0.89209 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.29 36.00 0.33 -0.69 16 2 C -0.13 -1.64 5.90 -104.48 -0.62 -2.25 16 3 C 0.09 1.22 10.86 -17.55 -0.19 1.03 16 4 N -0.49 -7.68 10.36 -13.25 -0.14 -7.82 16 5 C 0.10 1.57 11.18 -17.55 -0.20 1.38 16 6 C -0.16 -2.56 9.33 -39.44 -0.37 -2.93 16 7 C -0.06 -0.89 4.47 -104.32 -0.47 -1.35 16 8 C 0.15 1.93 1.64 -68.86 -0.11 1.82 16 9 H 0.09 1.09 5.25 -51.92 -0.27 0.82 16 10 N -0.67 -9.87 5.72 -100.95 -0.58 -10.45 16 11 C 0.08 1.24 2.52 -67.71 -0.17 1.07 16 12 H 0.03 0.59 7.56 -51.93 -0.39 0.20 16 13 C -0.14 -1.81 9.27 37.16 0.34 -1.46 16 14 C -0.10 -1.99 4.79 -26.73 -0.13 -2.12 16 15 C -0.01 -0.26 3.85 -27.88 -0.11 -0.37 16 16 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 20 Si 0.88 21.33 27.47 -169.99 -4.67 16.67 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.26 -5.82 6.36 56.52 0.36 -5.46 16 24 C -0.14 -1.55 5.21 -90.62 -0.47 -2.02 16 25 C -0.18 -1.64 9.05 -26.70 -0.24 -1.89 16 26 C -0.15 -1.56 10.04 -26.70 -0.27 -1.83 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.07 0.64 4.74 -51.93 -0.25 0.40 16 30 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 32 H 0.14 2.35 4.80 -52.49 -0.25 2.09 16 33 H 0.35 5.75 4.27 -39.30 -0.17 5.58 16 34 H 0.04 0.49 7.02 -51.93 -0.36 0.12 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 40 H 0.01 0.26 4.39 -51.93 -0.23 0.03 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 43 H 0.09 0.75 7.38 -51.92 -0.38 0.37 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -30.47 357.31 -9.68 -40.15 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.36 Total: 7.74 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -3.09 Total: -24.66 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.06 Total: -45.28 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.47 -9.68 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.591 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds