Wall clock time and date at job start Fri Apr 10 2020 19:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38221 * 120.42092 * 2 1 4 4 N 1.31852 * 120.76427 * 180.27085 * 3 2 1 5 5 C 1.31876 * 121.72694 * 359.74352 * 4 3 2 6 6 C 1.38185 * 120.76749 * 359.97438 * 5 4 3 7 7 C 1.38636 * 120.42037 * 179.74017 * 2 1 3 8 8 C 1.50703 * 120.78789 * 0.02562 * 7 2 1 9 9 H 1.09007 * 109.47037 * 327.26654 * 8 7 2 10 10 N 1.46901 * 109.46932 * 207.26783 * 8 7 2 11 11 C 1.46900 * 110.99890 * 81.27369 * 10 8 7 12 12 H 1.08998 * 109.47236 * 317.78757 * 11 10 8 13 13 C 1.53000 * 109.46968 * 77.79198 * 11 10 8 14 14 C 1.53002 * 109.46949 * 197.78936 * 11 10 8 15 15 C 1.52998 * 109.47063 * 65.00176 * 14 11 10 16 16 C 1.50701 * 109.47287 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00275 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00434 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00024 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47003 * 90.00412 * 20 18 16 22 22 H 1.48497 * 109.47678 * 210.00685 * 20 18 16 23 23 H 1.48497 * 109.47257 * 330.00992 * 20 18 16 24 24 C 1.53002 * 109.47440 * 87.26508 * 8 7 2 25 25 C 1.52997 * 117.50190 * 244.43267 * 24 8 7 26 26 C 1.52997 * 117.49891 * 175.77227 * 24 8 7 27 27 H 1.09005 * 109.46710 * 270.25998 * 1 2 3 28 28 H 1.09002 * 109.47360 * 30.26382 * 1 2 3 29 29 H 1.08997 * 109.47255 * 150.26619 * 1 2 3 30 30 H 1.08008 * 119.61629 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.62159 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.42041 * 180.02562 * 6 5 4 33 33 H 1.00894 * 110.99882 * 317.31611 * 10 8 7 34 34 H 1.08995 * 109.47051 * 294.57034 * 13 11 10 35 35 H 1.09000 * 109.47407 * 54.57753 * 13 11 10 36 36 H 1.09001 * 109.46951 * 174.57242 * 13 11 10 37 37 H 1.08999 * 109.47112 * 304.99971 * 14 11 10 38 38 H 1.08999 * 109.47180 * 185.00204 * 14 11 10 39 39 H 1.08999 * 109.47324 * 59.99924 * 15 14 11 40 40 H 1.08999 * 109.47146 * 300.00049 * 15 14 11 41 41 H 0.96999 * 120.00427 * 179.97438 * 19 18 16 42 42 H 1.09002 * 115.54334 * 30.10126 * 24 8 7 43 43 H 1.09011 * 117.49514 * 359.97438 * 25 24 8 44 44 H 1.08992 * 117.50189 * 145.01711 * 25 24 8 45 45 H 1.09002 * 117.49413 * 214.98093 * 26 24 8 46 46 H 1.08999 * 117.50071 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5253 1.1998 -0.0054 5 6 4.2256 0.0823 -0.0059 6 6 3.5948 -1.1471 -0.0002 7 6 2.2089 -1.1955 0.0054 8 6 1.4831 -2.5162 0.0108 9 1 0.5503 -2.4159 0.5658 10 7 2.3260 -3.5355 0.6501 11 6 2.2318 -3.4541 2.1138 12 1 2.2511 -2.4086 2.4216 13 6 0.9236 -4.0981 2.5772 14 6 3.4148 -4.1928 2.7429 15 6 4.7159 -3.4741 2.3804 16 6 5.8812 -4.2021 2.9995 17 1 5.7108 -5.0884 3.5925 18 6 7.1648 -3.7359 2.8097 19 7 8.1817 -4.3709 3.3503 20 14 7.4596 -2.2024 1.7846 21 1 7.4205 -1.0052 2.6624 22 1 8.7892 -2.2927 1.1295 23 1 6.4032 -2.0899 0.7470 24 6 1.1777 -2.9363 -1.4283 25 6 -0.2929 -3.0286 -1.8404 26 6 0.5284 -4.3051 -1.6420 27 1 -0.3633 0.0047 1.0277 28 1 -0.3634 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5097 30 1 1.6674 2.1276 0.0004 31 1 5.3046 0.1285 -0.0099 32 1 4.1737 -2.0588 -0.0002 33 1 3.2842 -3.4559 0.3444 34 1 0.0804 -3.5145 2.2077 35 1 0.8608 -5.1142 2.1877 36 1 0.8976 -4.1245 3.6666 37 1 3.4470 -5.2149 2.3656 38 1 3.2983 -4.2091 3.8265 39 1 4.6836 -2.4520 2.7577 40 1 4.8323 -3.4579 1.2968 41 1 9.0848 -4.0432 3.2165 42 1 1.8902 -2.5944 -2.1790 43 1 -1.0428 -2.7905 -1.0859 44 1 -0.5478 -2.7480 -2.8622 45 1 0.8135 -4.8636 -2.5336 46 1 0.3192 -4.9065 -0.7574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:12 Heat of formation + Delta-G solvation = 26.826919 kcal Electronic energy + Delta-G solvation = -23923.870876 eV Core-core repulsion = 20812.741453 eV Total energy + Delta-G solvation = -3111.129423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68042 -39.33071 -37.57858 -35.33404 -34.69193 -33.58099 -32.31657 -30.61317 -28.18118 -27.58312 -26.74000 -23.90720 -23.18370 -22.88854 -22.71712 -21.10227 -21.02781 -19.01988 -18.13956 -17.63875 -16.67039 -16.51982 -16.34641 -15.98876 -15.71953 -15.30060 -15.03358 -14.71011 -14.50006 -14.31453 -14.22002 -13.81059 -13.61156 -13.37941 -13.19929 -13.12204 -12.91438 -12.75705 -12.46664 -12.21945 -12.16697 -12.10131 -11.79830 -11.67442 -11.35224 -11.22505 -11.16136 -10.88268 -10.79744 -10.50164 -10.39438 -9.85579 -9.44632 -8.32403 -6.35786 0.10636 0.21952 1.30293 1.31150 1.41623 2.30988 2.74256 2.81163 3.02889 3.39563 3.47267 3.50001 3.77453 3.93259 3.99667 4.04412 4.07830 4.18227 4.27871 4.28745 4.33839 4.45433 4.51987 4.64307 4.70266 4.72979 4.80291 4.84051 4.86512 4.91467 4.96875 5.01893 5.06605 5.11554 5.15781 5.23363 5.29347 5.37057 5.39687 5.45624 5.51067 5.54415 5.64382 5.75029 6.18214 6.26494 6.36445 6.72471 6.95200 7.28573 8.84352 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.006189 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.458429 B = 4523.176145 C = 5662.578913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C 0.087 3.913 4 N -0.507 5.507 5 C 0.073 3.927 6 C -0.178 4.178 7 C -0.070 4.070 8 C 0.161 3.839 9 H 0.106 0.894 10 N -0.673 5.673 11 C 0.090 3.910 12 H 0.026 0.974 13 C -0.131 4.131 14 C -0.098 4.098 15 C -0.002 4.002 16 C -0.528 4.528 17 H 0.032 0.968 18 C 0.007 3.993 19 N -0.951 5.951 20 Si 0.939 3.061 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.233 1.233 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.157 4.157 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.182 0.818 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.339 0.661 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.004 0.996 40 H 0.022 0.978 41 H 0.265 0.735 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.866 8.239 -11.217 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.071 4.071 4 N -0.216 5.216 5 C -0.082 4.082 6 C -0.199 4.199 7 C -0.079 4.079 8 C 0.051 3.949 9 H 0.124 0.876 10 N -0.306 5.306 11 C -0.020 4.020 12 H 0.044 0.956 13 C -0.189 4.189 14 C -0.136 4.136 15 C -0.039 4.039 16 C -0.566 4.566 17 H 0.050 0.950 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.763 3.237 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.156 1.156 24 C -0.173 4.173 25 C -0.196 4.196 26 C -0.195 4.195 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.199 0.801 31 H 0.165 0.835 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.022 0.978 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.690 8.504 -11.242 25.868 hybrid contribution 1.715 0.307 0.252 1.760 sum -19.976 8.811 -10.990 24.442 Atomic orbital electron populations 1.20917 0.87580 1.04918 1.03602 1.21111 0.99345 0.92496 0.99713 1.23206 0.89394 0.98953 0.95538 1.67648 1.09746 1.31306 1.12851 1.22712 1.00531 0.88156 0.96832 1.22110 0.95896 0.99490 1.02355 1.21243 0.93338 0.97742 0.95614 1.20229 0.96164 0.83919 0.94560 0.87590 1.60865 1.14853 1.48864 1.06028 1.21494 0.96078 0.97059 0.87341 0.95575 1.21753 0.95161 1.01329 1.00642 1.21504 0.93262 0.99315 0.99519 1.19484 0.93527 0.94981 0.95904 1.21490 0.91786 1.11696 1.31638 0.95003 1.25963 0.95865 1.00348 0.96803 1.70063 0.99642 1.42471 1.46984 0.85836 0.78362 0.79290 0.80209 1.20101 1.21135 1.15606 1.21986 0.97241 1.03230 0.94813 1.23133 0.91985 1.01259 1.03200 1.22805 1.03121 0.90423 1.03116 0.89977 0.89093 0.89846 0.80126 0.83531 0.85873 0.83899 0.91628 0.91890 0.92221 0.92565 0.92829 0.97786 0.96021 0.92607 0.89470 0.87432 0.87726 0.88945 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.29 71.24 0.66 -0.83 16 2 C -0.12 -2.68 5.90 -19.77 -0.12 -2.80 16 3 C 0.09 2.05 10.86 84.69 0.92 2.97 16 4 N -0.51 -15.39 10.36 -195.85 -2.03 -17.42 16 5 C 0.07 2.35 11.18 84.67 0.95 3.30 16 6 C -0.18 -5.54 9.33 22.36 0.21 -5.33 16 7 C -0.07 -1.78 4.47 -19.67 -0.09 -1.87 16 8 C 0.16 3.63 1.64 44.17 0.07 3.70 16 9 H 0.11 2.09 5.25 -2.38 -0.01 2.08 16 10 N -0.67 -18.84 5.72 -473.29 -2.71 -21.55 16 11 C 0.09 2.69 2.52 44.92 0.11 2.80 16 12 H 0.03 0.84 7.56 -2.39 -0.02 0.82 16 13 C -0.13 -3.10 9.27 71.98 0.67 -2.43 16 14 C -0.10 -3.79 4.79 30.59 0.15 -3.64 16 15 C 0.00 -0.07 3.85 29.85 0.11 0.04 16 16 C -0.53 -30.74 9.66 25.60 0.25 -30.49 16 17 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 18 C 0.01 0.41 5.47 84.65 0.46 0.88 16 19 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 20 Si 0.94 44.80 27.47 68.60 1.88 46.68 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.23 -9.86 6.36 99.48 0.63 -9.22 16 24 C -0.15 -3.04 5.21 -10.80 -0.06 -3.09 16 25 C -0.16 -2.20 9.05 30.62 0.28 -1.93 16 26 C -0.16 -2.83 10.04 30.62 0.31 -2.52 16 27 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 28 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 29 H 0.08 0.99 4.74 -2.39 -0.01 0.97 16 30 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 32 H 0.12 4.15 4.80 -2.91 -0.01 4.13 16 33 H 0.34 10.95 4.27 -89.70 -0.38 10.57 16 34 H 0.06 1.26 7.02 -2.39 -0.02 1.24 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.00 0.18 7.57 -2.39 -0.02 0.16 16 40 H 0.02 0.97 4.39 -2.39 -0.01 0.96 16 41 H 0.27 15.83 8.31 -92.71 -0.77 15.05 16 42 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 43 H 0.11 1.20 7.38 -2.38 -0.02 1.18 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 46 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.79 357.31 2.84 -65.94 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.51 Total: 27.95 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 4.89 Total: -41.25 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -4.44 Total: -99.33 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -68.79 2.84 -65.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.771 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds