Wall clock time and date at job start Fri Apr 10 2020 19:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38223 * 120.41805 * 2 1 4 4 N 1.31856 * 120.76457 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72497 * 359.97438 * 4 3 2 6 6 C 1.38186 * 120.76761 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.42374 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47537 * 159.99896 * 7 6 5 9 9 N 1.46906 * 109.47294 * 39.99176 * 7 6 5 10 10 C 1.46898 * 111.00003 * 154.99930 * 9 7 6 11 11 H 1.09009 * 109.46939 * 35.00713 * 10 9 7 12 12 C 1.52995 * 109.47382 * 275.00640 * 10 9 7 13 13 C 1.52998 * 109.46872 * 155.00238 * 10 9 7 14 14 C 1.52998 * 109.47537 * 295.00478 * 13 10 9 15 15 C 1.50700 * 109.47361 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99734 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99968 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.46932 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46866 * 120.00109 * 19 17 15 22 22 H 1.48501 * 109.46869 * 239.99459 * 19 17 15 23 23 C 1.53009 * 109.47125 * 279.99726 * 7 6 5 24 24 C 1.53001 * 117.49517 * 8.62417 * 23 7 6 25 25 C 1.52995 * 117.49517 * 300.00099 * 23 7 6 26 26 C 1.38628 * 120.42163 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.46982 * 90.00050 * 1 2 3 28 28 H 1.08999 * 109.47057 * 210.00365 * 1 2 3 29 29 H 1.09002 * 109.46978 * 329.99732 * 1 2 3 30 30 H 1.08000 * 119.62014 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.62224 * 179.72558 * 5 4 3 32 32 H 1.00902 * 110.99632 * 31.05458 * 9 7 6 33 33 H 1.08992 * 109.47310 * 299.99909 * 12 10 9 34 34 H 1.09003 * 109.47223 * 60.00006 * 12 10 9 35 35 H 1.09001 * 109.46945 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.46813 * 55.00669 * 13 10 9 37 37 H 1.09005 * 109.46977 * 175.00438 * 13 10 9 38 38 H 1.09006 * 109.46820 * 300.00162 * 14 13 10 39 39 H 1.08996 * 109.47259 * 59.99945 * 14 13 10 40 40 H 0.97003 * 120.00033 * 179.97438 * 18 17 15 41 41 H 1.08997 * 115.54819 * 154.32152 * 23 7 6 42 42 H 1.09006 * 117.49922 * 359.97438 * 24 23 7 43 43 H 1.08997 * 117.50189 * 145.02586 * 24 23 7 44 44 H 1.09005 * 117.49278 * 214.97393 * 25 23 7 45 45 H 1.08994 * 117.50419 * 359.97438 * 25 23 7 46 46 H 1.08005 * 120.78857 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0824 0.0015 6 6 3.5948 -1.1471 0.0016 7 6 4.4026 -2.4192 0.0022 8 1 3.7821 -3.2435 0.3536 9 7 5.5606 -2.2636 0.8927 10 6 6.0212 -3.5669 1.3899 11 1 5.8880 -4.3199 0.6130 12 6 5.2071 -3.9584 2.6247 13 6 7.5021 -3.4758 1.7632 14 6 8.3298 -3.2071 0.5048 15 6 9.7886 -3.1180 0.8725 16 1 10.0947 -3.2404 1.9010 17 6 10.7323 -2.8792 -0.1039 18 7 10.3595 -2.7297 -1.3562 19 14 12.5404 -2.7681 0.3521 20 1 12.6953 -2.9699 1.8150 21 1 13.2998 -3.8163 -0.3759 22 1 13.0635 -1.4292 -0.0206 23 6 4.8880 -2.7159 -1.4183 24 6 4.6687 -1.6358 -2.4796 25 6 3.8252 -2.9122 -2.5012 26 6 2.2090 -1.1954 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6675 2.1276 0.0004 31 1 5.3046 0.1285 -0.0026 32 1 5.3479 -1.6398 1.6567 33 1 5.3403 -3.2056 3.4014 34 1 4.1520 -4.0233 2.3586 35 1 5.5486 -4.9257 2.9933 36 1 7.6481 -2.6630 2.4746 37 1 7.8215 -4.4153 2.2144 38 1 8.1837 -4.0200 -0.2066 39 1 8.0105 -2.2677 0.0537 40 1 11.0234 -2.5613 -2.0431 41 1 5.7958 -3.3148 -1.4893 42 1 4.1784 -0.7142 -2.1660 43 1 5.4324 -1.5242 -3.2493 44 1 4.0342 -3.6402 -3.2851 45 1 2.7804 -2.8305 -2.2019 46 1 1.6888 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:22 Heat of formation + Delta-G solvation = 24.538128 kcal Electronic energy + Delta-G solvation = -23183.918718 eV Core-core repulsion = 20072.690046 eV Total energy + Delta-G solvation = -3111.228672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65200 -39.25639 -37.47951 -35.25675 -34.48308 -33.84450 -31.94657 -30.26005 -28.13528 -27.07788 -26.46117 -24.50813 -23.22275 -23.12175 -22.95579 -21.28133 -20.29523 -18.35845 -17.88727 -17.60128 -17.17645 -16.60571 -16.36061 -15.88178 -15.23306 -14.96529 -14.82684 -14.50616 -14.34044 -14.03413 -13.96409 -13.84058 -13.58606 -13.50953 -13.24693 -13.10035 -12.87919 -12.84501 -12.71023 -12.38581 -12.30377 -12.06536 -11.77290 -11.49760 -11.29308 -11.15957 -10.96363 -10.92221 -10.55309 -10.46922 -10.32329 -9.68062 -9.14477 -8.12164 -6.21863 0.15123 0.34209 1.39051 1.39911 1.52577 2.44092 2.80029 2.82095 3.20184 3.31925 3.45719 3.72196 3.90240 3.96003 4.02997 4.08082 4.09757 4.15777 4.20898 4.33294 4.35439 4.50267 4.60470 4.67838 4.73437 4.78539 4.81262 4.87263 4.90353 4.99514 5.02586 5.07322 5.11263 5.21366 5.23687 5.30497 5.31828 5.33203 5.38451 5.49877 5.61574 5.81910 5.92604 6.06895 6.28100 6.37433 6.59009 6.98546 7.07150 7.45905 8.98772 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.003840 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.611831 B = 7289.687101 C = 7538.119778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C 0.080 3.920 4 N -0.510 5.510 5 C 0.098 3.902 6 C -0.125 4.125 7 C 0.175 3.825 8 H 0.070 0.930 9 N -0.681 5.681 10 C 0.093 3.907 11 H 0.064 0.936 12 C -0.169 4.169 13 C -0.088 4.088 14 C 0.043 3.957 15 C -0.541 4.541 16 H 0.053 0.947 17 C -0.001 4.001 18 N -0.930 5.930 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.281 1.281 23 C -0.143 4.143 24 C -0.185 4.185 25 C -0.156 4.156 26 C -0.075 4.075 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.138 0.862 32 H 0.342 0.658 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.049 0.951 38 H -0.024 1.024 39 H 0.005 0.995 40 H 0.259 0.741 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.748 1.830 3.135 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C -0.078 4.078 4 N -0.218 5.218 5 C -0.059 4.059 6 C -0.127 4.127 7 C 0.065 3.935 8 H 0.088 0.912 9 N -0.312 5.312 10 C -0.016 4.016 11 H 0.082 0.918 12 C -0.228 4.228 13 C -0.126 4.126 14 C 0.006 3.994 15 C -0.579 4.579 16 H 0.071 0.929 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.206 1.206 23 C -0.162 4.162 24 C -0.222 4.222 25 C -0.193 4.193 26 C -0.101 4.101 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.067 0.933 38 H -0.005 1.005 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.128 0.872 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.766 2.687 2.476 23.057 hybrid contribution 0.688 -0.802 0.334 1.108 sum -22.078 1.885 2.811 22.336 Atomic orbital electron populations 1.20774 0.87610 1.04287 1.03558 1.21219 0.99204 0.93162 0.99809 1.23154 0.89435 0.99090 0.96075 1.67715 1.09707 1.31635 1.12709 1.22507 1.00177 0.87652 0.95557 1.20787 0.94890 0.95621 1.01415 1.19747 0.89105 0.93099 0.91539 0.91206 1.60390 1.35067 1.12803 1.22963 1.21530 0.94326 0.90018 0.95746 0.91771 1.22392 0.99994 1.02429 0.97946 1.21450 0.93614 0.99521 0.98010 1.18784 0.92674 0.94936 0.93048 1.21851 0.94272 1.47891 0.93874 0.92869 1.25913 1.03665 0.95246 0.94967 1.70128 1.35028 1.50644 1.01289 0.85515 0.79885 0.77649 0.78684 1.18719 1.20449 1.20645 1.22192 1.00177 1.03245 0.90632 1.22955 1.03333 0.93940 1.01994 1.22998 0.96707 0.99048 1.00529 1.21644 0.92341 0.99636 0.96485 0.89880 0.90196 0.89954 0.80935 0.84413 0.83834 0.92285 0.91708 0.91558 0.93674 0.93277 1.00534 0.97652 0.93196 0.90084 0.89198 0.90581 0.88304 0.87161 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.04 71.24 0.72 -0.25 16 2 C -0.13 -2.23 5.90 -19.77 -0.12 -2.34 16 3 C 0.08 1.66 10.86 84.69 0.92 2.58 16 4 N -0.51 -14.42 10.36 -195.84 -2.03 -16.45 16 5 C 0.10 2.85 8.43 84.67 0.71 3.57 16 6 C -0.12 -3.04 3.17 -19.78 -0.06 -3.10 16 7 C 0.18 4.67 2.44 44.17 0.11 4.78 16 8 H 0.07 1.62 7.00 -2.39 -0.02 1.60 16 9 N -0.68 -21.55 4.92 -473.30 -2.33 -23.88 16 10 C 0.09 3.03 2.40 44.91 0.11 3.13 16 11 H 0.06 2.21 7.48 -2.38 -0.02 2.19 16 12 C -0.17 -4.09 9.15 71.98 0.66 -3.43 16 13 C -0.09 -3.65 4.83 30.59 0.15 -3.50 16 14 C 0.04 2.32 4.86 29.85 0.15 2.46 16 15 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 16 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 18 N -0.93 -58.72 13.29 21.45 0.28 -58.44 16 19 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 20 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 23 C -0.14 -4.41 5.73 -10.79 -0.06 -4.47 16 24 C -0.19 -5.57 9.50 30.60 0.29 -5.28 16 25 C -0.16 -3.75 10.02 30.59 0.31 -3.44 16 26 C -0.07 -1.39 9.08 22.47 0.20 -1.19 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.57 8.10 -2.39 -0.02 0.55 16 29 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 30 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.14 4.73 7.73 -2.91 -0.02 4.71 16 32 H 0.34 10.15 7.74 -89.69 -0.69 9.45 16 33 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 34 H 0.06 1.32 7.43 -2.39 -0.02 1.30 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 38 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 39 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.08 3.14 7.94 -2.39 -0.02 3.13 16 42 H 0.09 2.71 5.41 -2.38 -0.01 2.70 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.11 2.12 7.71 -2.39 -0.02 2.10 16 46 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -70.22 370.04 2.97 -67.25 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.25 Total: 25.22 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 4.77 Total: -41.83 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -4.07 Total: -98.77 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.22 2.97 -67.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.787 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds