Wall clock time and date at job start Fri Apr 10 2020 19:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.41510 * 2 1 4 4 N 1.31861 * 120.75852 * 179.97438 * 3 2 1 5 5 C 1.31882 * 121.72730 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76538 * 359.97122 * 5 4 3 7 7 C 1.50697 * 120.41584 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47328 * 160.00309 * 7 6 5 9 9 N 1.46903 * 109.47582 * 39.99669 * 7 6 5 10 10 C 1.46896 * 110.99846 * 150.43304 * 9 7 6 11 11 H 1.08995 * 109.47652 * 333.32327 * 10 9 7 12 12 C 1.53005 * 109.46768 * 93.32221 * 10 9 7 13 13 C 1.52997 * 109.47430 * 213.31845 * 10 9 7 14 14 C 1.53005 * 109.47065 * 65.00399 * 13 10 9 15 15 C 1.50695 * 109.47122 * 180.02562 * 14 13 10 16 16 H 1.08002 * 120.00408 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00217 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99851 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47337 * 89.99903 * 19 17 15 21 21 H 1.48499 * 109.46906 * 209.99771 * 19 17 15 22 22 H 1.48499 * 109.47120 * 329.99448 * 19 17 15 23 23 C 1.52998 * 109.46981 * 279.99882 * 7 6 5 24 24 C 1.52997 * 117.49920 * 3.15236 * 23 7 6 25 25 C 1.52998 * 60.00150 * 252.50854 * 24 23 7 26 26 C 1.38631 * 120.41948 * 180.21666 * 2 1 3 27 27 H 1.08994 * 109.47377 * 89.99928 * 1 2 3 28 28 H 1.09004 * 109.47016 * 209.99935 * 1 2 3 29 29 H 1.08996 * 109.47125 * 329.99281 * 1 2 3 30 30 H 1.07991 * 119.62155 * 359.95684 * 3 2 1 31 31 H 1.07999 * 119.61690 * 179.97438 * 5 4 3 32 32 H 1.00890 * 111.00360 * 274.39534 * 9 7 6 33 33 H 1.09002 * 109.47429 * 174.40701 * 12 10 9 34 34 H 1.09000 * 109.47043 * 294.40993 * 12 10 9 35 35 H 1.09001 * 109.46926 * 54.41106 * 12 10 9 36 36 H 1.09003 * 109.47813 * 185.00461 * 13 10 9 37 37 H 1.09003 * 109.47459 * 305.00691 * 13 10 9 38 38 H 1.08999 * 109.46666 * 300.00167 * 14 13 10 39 39 H 1.08995 * 109.46629 * 60.00198 * 14 13 10 40 40 H 0.97003 * 120.00331 * 180.02562 * 18 17 15 41 41 H 1.09008 * 115.55116 * 148.86357 * 23 7 6 42 42 H 1.09001 * 117.49984 * 0.02562 * 24 23 7 43 43 H 1.09002 * 117.49738 * 145.01975 * 24 23 7 44 44 H 1.09001 * 117.49859 * 252.50917 * 25 24 23 45 45 H 1.08999 * 117.51678 * 107.47631 * 25 24 23 46 46 H 1.08000 * 120.79105 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0824 0.0005 6 6 3.5948 -1.1470 0.0006 7 6 4.4027 -2.4191 0.0012 8 1 3.7822 -3.2435 0.3526 9 7 5.5606 -2.2635 0.8918 10 6 5.9540 -3.5535 1.4740 11 1 5.0867 -4.2122 1.5176 12 6 7.0385 -4.1951 0.6062 13 6 6.4969 -3.3310 2.8870 14 6 5.3766 -2.8057 3.7870 15 6 5.9115 -2.5859 5.1785 16 1 6.9470 -2.7992 5.3990 17 6 5.0791 -2.1116 6.1701 18 7 5.5458 -1.9203 7.3847 19 14 3.2882 -1.7421 5.7887 20 1 2.4701 -2.9580 6.0276 21 1 2.8113 -0.6441 6.6674 22 1 3.1595 -1.3302 4.3677 23 6 4.8880 -2.7157 -1.4191 24 6 4.5556 -1.6928 -2.5073 25 6 3.8286 -3.0387 -2.4747 26 6 2.2090 -1.1955 -0.0045 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6675 2.1276 -0.0007 31 1 5.3047 0.1286 0.0005 32 1 6.3345 -1.8344 0.4071 33 1 7.4009 -5.1026 1.0893 34 1 6.6225 -4.4445 -0.3700 35 1 7.8649 -3.4954 0.4810 36 1 6.8708 -4.2742 3.2854 37 1 7.3080 -2.6035 2.8543 38 1 5.0028 -1.8625 3.3886 39 1 4.5657 -3.5332 3.8197 40 1 4.9601 -1.5870 8.0824 41 1 5.8442 -3.2343 -1.4906 42 1 3.9915 -0.8084 -2.2112 43 1 5.2931 -1.5381 -3.2948 44 1 4.0879 -3.7694 -3.2408 45 1 2.7860 -3.0403 -2.1571 46 1 1.6888 -2.1420 -0.0085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:25 Heat of formation + Delta-G solvation = 26.201672 kcal Electronic energy + Delta-G solvation = -23428.435884 eV Core-core repulsion = 20317.279349 eV Total energy + Delta-G solvation = -3111.156536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58581 -39.38310 -37.44227 -35.18326 -34.46090 -33.84506 -32.36763 -30.43665 -28.13553 -27.19521 -26.40060 -24.41709 -23.20001 -23.02618 -22.65642 -21.44441 -20.55469 -18.84486 -17.92084 -17.52988 -17.31033 -16.33670 -16.08069 -16.05886 -15.47683 -15.03115 -14.83048 -14.53448 -14.36477 -14.15295 -13.98015 -13.94078 -13.59718 -13.53336 -13.31226 -13.24184 -12.91009 -12.86920 -12.58369 -12.35970 -12.28211 -12.04840 -11.69999 -11.47737 -11.31551 -11.28642 -11.11007 -10.96834 -10.73689 -10.50872 -10.30859 -9.61609 -9.18947 -8.28490 -6.29290 0.22678 0.38373 1.29365 1.33801 1.47226 2.35566 2.76983 2.86182 3.08117 3.32774 3.55841 3.74250 3.87563 3.92901 4.02516 4.03477 4.10422 4.15641 4.18643 4.32364 4.35357 4.41781 4.55746 4.72105 4.77186 4.78167 4.81034 4.85138 4.88034 4.95311 4.97763 5.03478 5.04587 5.18126 5.24921 5.25523 5.29109 5.32779 5.40030 5.42951 5.61593 5.70434 5.78708 5.84929 6.24852 6.34156 6.60555 6.79798 7.09729 7.34789 8.88900 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.006014 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.348527 B = 4654.395754 C = 6286.698790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C 0.071 3.929 4 N -0.511 5.511 5 C 0.100 3.900 6 C -0.106 4.106 7 C 0.166 3.834 8 H 0.085 0.915 9 N -0.683 5.683 10 C 0.095 3.905 11 H 0.071 0.929 12 C -0.170 4.170 13 C -0.084 4.084 14 C 0.004 3.996 15 C -0.526 4.526 16 H 0.030 0.970 17 C 0.004 3.996 18 N -0.955 5.955 19 Si 0.949 3.051 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.256 1.256 23 C -0.180 4.180 24 C -0.178 4.178 25 C -0.164 4.164 26 C -0.091 4.091 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.349 0.651 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.021 0.979 39 H 0.003 0.997 40 H 0.264 0.736 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -1.261 -24.822 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.140 4.140 3 C -0.086 4.086 4 N -0.219 5.219 5 C -0.057 4.057 6 C -0.108 4.108 7 C 0.056 3.944 8 H 0.103 0.897 9 N -0.314 5.314 10 C -0.015 4.015 11 H 0.089 0.911 12 C -0.229 4.229 13 C -0.123 4.123 14 C -0.034 4.034 15 C -0.564 4.564 16 H 0.048 0.952 17 C -0.192 4.192 18 N -0.596 5.596 19 Si 0.773 3.227 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.180 1.180 23 C -0.199 4.199 24 C -0.215 4.215 25 C -0.202 4.202 26 C -0.117 4.117 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.186 0.814 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.111 0.889 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.641 -0.211 -24.092 25.596 hybrid contribution -0.288 -0.788 0.085 0.843 sum -8.929 -0.999 -24.008 25.634 Atomic orbital electron populations 1.20762 0.88078 1.03851 1.03595 1.21202 0.99099 0.93525 1.00205 1.23014 0.89756 0.98722 0.97121 1.67644 1.09449 1.32070 1.12719 1.22507 1.00341 0.87359 0.95462 1.20836 0.94473 0.96535 0.98996 1.19980 0.91637 0.93138 0.89692 0.89717 1.60404 1.09572 1.24201 1.37192 1.21588 0.97566 0.88995 0.93319 0.91076 1.22479 0.98894 1.01509 0.99997 1.21360 0.97710 0.99300 0.93904 1.19332 0.95259 0.96153 0.92614 1.21674 0.96866 1.42358 0.95527 0.95205 1.25948 1.03469 0.95126 0.94664 1.70075 1.37933 1.48536 1.03104 0.85669 0.79903 0.78263 0.78849 1.18971 1.21325 1.18003 1.23214 1.01207 1.05013 0.90465 1.23033 1.03919 0.93470 1.01106 1.22956 0.97334 0.98733 1.01137 1.21625 0.93315 0.99198 0.97536 0.89326 0.90897 0.90349 0.81379 0.83289 0.83109 0.91958 0.90961 0.92056 0.93319 0.93814 0.96021 0.97849 0.92729 0.86115 0.90155 0.88148 0.87418 0.88890 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.04 71.24 0.72 -0.84 16 2 C -0.14 -3.07 5.90 -19.77 -0.12 -3.18 16 3 C 0.07 1.77 10.86 84.69 0.92 2.69 16 4 N -0.51 -15.46 10.36 -195.84 -2.03 -17.49 16 5 C 0.10 2.89 9.09 84.67 0.77 3.66 16 6 C -0.11 -2.72 3.29 -19.77 -0.07 -2.78 16 7 C 0.17 3.82 2.59 44.17 0.11 3.94 16 8 H 0.08 2.01 7.16 -2.39 -0.02 1.99 16 9 N -0.68 -18.53 4.91 -473.32 -2.32 -20.86 16 10 C 0.09 2.67 2.64 44.92 0.12 2.79 16 11 H 0.07 2.01 7.23 -2.39 -0.02 1.99 16 12 C -0.17 -3.58 8.80 71.98 0.63 -2.94 16 13 C -0.08 -3.29 4.83 30.59 0.15 -3.14 16 14 C 0.00 0.19 3.93 29.85 0.12 0.31 16 15 C -0.53 -31.86 9.66 25.60 0.25 -31.62 16 16 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 17 C 0.00 0.24 5.47 84.65 0.46 0.70 16 18 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16 19 Si 0.95 47.63 27.47 68.60 1.88 49.52 16 20 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 23 C -0.18 -3.13 5.46 -10.79 -0.06 -3.19 16 24 C -0.18 -3.10 9.46 30.59 0.29 -2.81 16 25 C -0.16 -2.47 10.12 30.59 0.31 -2.17 16 26 C -0.09 -2.11 9.48 22.47 0.21 -1.90 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 29 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 30 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.15 4.16 7.42 -2.91 -0.02 4.13 16 32 H 0.35 8.40 7.54 -89.70 -0.68 7.73 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.21 6.13 -2.39 -0.01 1.20 16 35 H 0.06 1.24 8.01 -2.39 -0.02 1.23 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.02 1.10 6.81 -2.39 -0.02 1.08 16 39 H 0.00 0.15 7.57 -2.39 -0.02 0.14 16 40 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 41 H 0.12 1.92 5.85 -2.38 -0.01 1.90 16 42 H 0.08 1.71 5.63 -2.39 -0.01 1.70 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 46 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -73.04 363.98 2.87 -70.17 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.22 Total: 21.40 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 4.82 Total: -40.50 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.05 Total: -100.58 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.88 Total: 49.52 kcal Total: -73.04 2.87 -70.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.367 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds