Wall clock time and date at job start Fri Apr 10 2020 19:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31893 * 119.61703 * 2 1 4 4 C 1.31849 * 121.72716 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.76293 * 0.02562 * 4 3 2 6 6 C 1.38628 * 119.15652 * 359.76854 * 5 4 3 7 7 C 1.38174 * 119.62126 * 180.02562 * 2 1 3 8 8 C 1.50710 * 120.41625 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.46807 * 328.66933 * 8 7 2 10 10 N 1.46895 * 109.47215 * 208.66973 * 8 7 2 11 11 C 1.46900 * 111.00222 * 82.53505 * 10 8 7 12 12 H 1.08997 * 109.47120 * 321.76404 * 11 10 8 13 13 C 1.52998 * 109.46945 * 81.76451 * 11 10 8 14 14 C 1.53005 * 109.46796 * 201.76492 * 11 10 8 15 15 C 1.52997 * 109.47190 * 65.00426 * 14 11 10 16 16 C 1.50704 * 109.46998 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99726 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99767 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47112 * 90.00211 * 20 18 16 22 22 H 1.48501 * 109.46994 * 210.00388 * 20 18 16 23 23 H 1.48500 * 109.47131 * 330.00071 * 20 18 16 24 24 C 1.52999 * 109.47090 * 88.66648 * 8 7 2 25 25 C 1.53002 * 117.49745 * 244.77807 * 24 8 7 26 26 C 1.52998 * 117.49938 * 176.11741 * 24 8 7 27 27 H 1.09001 * 109.47273 * 269.97734 * 1 2 3 28 28 H 1.09002 * 109.47383 * 29.97915 * 1 2 3 29 29 H 1.08999 * 109.46892 * 149.97261 * 1 2 3 30 30 H 1.08004 * 119.61962 * 179.97438 * 4 3 2 31 31 H 1.07991 * 120.41693 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.78198 * 180.23050 * 6 5 4 33 33 H 1.00909 * 110.99791 * 318.57840 * 10 8 7 34 34 H 1.08999 * 109.47170 * 304.62324 * 13 11 10 35 35 H 1.08999 * 109.47268 * 64.62481 * 13 11 10 36 36 H 1.08997 * 109.46857 * 184.62120 * 13 11 10 37 37 H 1.09004 * 109.46565 * 185.00160 * 14 11 10 38 38 H 1.09003 * 109.47051 * 304.99451 * 14 11 10 39 39 H 1.08997 * 109.46817 * 299.99215 * 15 14 11 40 40 H 1.08994 * 109.47366 * 59.99457 * 15 14 11 41 41 H 0.97005 * 120.00041 * 179.97438 * 19 18 16 42 42 H 1.09002 * 115.55104 * 30.44788 * 24 8 7 43 43 H 1.08996 * 117.49874 * 0.02562 * 25 24 8 44 44 H 1.09001 * 117.49912 * 145.01983 * 25 24 8 45 45 H 1.08998 * 117.49970 * 214.98058 * 26 24 8 46 46 H 1.08997 * 117.49884 * 0.02562 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1952 0.0005 5 6 4.2267 0.0341 0.0005 6 6 3.5766 -1.1902 0.0049 7 6 2.1899 -1.2012 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 1 0.4955 -2.3833 0.5342 10 7 2.2457 -3.5381 0.6633 11 6 2.0998 -3.4627 2.1231 12 1 2.0482 -2.4180 2.4296 13 6 0.8171 -4.1820 2.5453 14 6 3.3030 -4.1313 2.7911 15 6 4.5710 -3.3378 2.4696 16 6 5.7560 -3.9960 3.1280 17 1 5.6184 -4.8906 3.7173 18 6 7.0158 -3.4562 2.9783 19 7 7.1832 -2.3666 2.2612 20 14 8.4846 -4.2717 3.7950 21 1 9.0739 -5.2718 2.8688 22 1 9.5026 -3.2420 4.1246 23 1 8.0449 -4.9496 5.0409 24 6 1.1529 -2.9316 -1.4426 25 6 -0.3101 -2.9893 -1.8866 26 6 0.4729 -4.2849 -1.6595 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5143 30 1 3.9753 2.1531 0.0001 31 1 5.3057 0.0804 0.0013 32 1 4.1368 -2.1136 0.0087 33 1 3.2152 -3.4674 0.3927 34 1 -0.0308 -3.7590 2.0066 35 1 0.9024 -5.2435 2.3127 36 1 0.6660 -4.0560 3.6173 37 1 3.1528 -4.1545 3.8705 38 1 3.4069 -5.1498 2.4168 39 1 4.7211 -3.3146 1.3903 40 1 4.4670 -2.3194 2.8439 41 1 8.0695 -1.9865 2.1561 42 1 1.8905 -2.6151 -2.1801 43 1 -1.0700 -2.7243 -1.1515 44 1 -0.5350 -2.7112 -2.9163 45 1 0.7629 -4.8585 -2.5397 46 1 0.2277 -4.8724 -0.7748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:42 Heat of formation + Delta-G solvation = 42.262635 kcal Electronic energy + Delta-G solvation = -23831.079276 eV Core-core repulsion = 20720.619196 eV Total energy + Delta-G solvation = -3110.460080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 6.07 seconds Orbital eigenvalues (eV) -40.41823 -38.05393 -36.28960 -33.50450 -32.80228 -32.55775 -30.36389 -29.08721 -27.30471 -26.01231 -24.88092 -22.63749 -22.22976 -21.73450 -21.31428 -19.93154 -19.47431 -16.95542 -16.39606 -16.07700 -15.64964 -15.18879 -14.91927 -14.56036 -14.43816 -13.92215 -13.63435 -13.20186 -12.93579 -12.66530 -12.50649 -12.35762 -12.33999 -12.09847 -11.84282 -11.52988 -11.39917 -11.31988 -11.27518 -10.98614 -10.90479 -10.51441 -10.43203 -10.17893 -9.96585 -9.82437 -9.38957 -9.26271 -9.25214 -9.02293 -8.48262 -8.39195 -8.05496 -6.05075 -4.06256 1.38139 1.62873 3.28991 3.35686 3.39066 3.83264 4.04202 4.42667 4.51140 4.56446 4.72970 4.97285 5.07729 5.12524 5.22640 5.31295 5.33884 5.35845 5.52273 5.55409 5.65715 5.67076 5.68118 5.74701 5.80002 5.83077 5.89127 5.92886 6.05119 6.16713 6.17901 6.21405 6.32651 6.35844 6.41651 6.47939 6.61157 6.64828 6.88131 7.01613 7.05775 7.46499 7.57565 7.75887 7.82714 7.94266 8.25239 8.38503 8.99465 9.57985 11.05863 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.005312 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.714536 B = 5269.473905 C = 6340.601262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.125 3.875 3 N -0.491 5.491 4 C 0.091 3.909 5 C -0.158 4.158 6 C -0.058 4.058 7 C -0.160 4.160 8 C 0.161 3.839 9 H 0.087 0.913 10 N -0.674 5.674 11 C 0.082 3.918 12 H 0.036 0.964 13 C -0.136 4.136 14 C -0.115 4.115 15 C 0.024 3.976 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.136 4.136 25 C -0.185 4.185 26 C -0.154 4.154 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.352 0.648 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.259 0.741 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 1.982 -7.297 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.013 4.013 3 N -0.201 5.201 4 C -0.066 4.066 5 C -0.178 4.178 6 C -0.084 4.084 7 C -0.164 4.164 8 C 0.050 3.950 9 H 0.105 0.895 10 N -0.308 5.308 11 C -0.027 4.027 12 H 0.054 0.946 13 C -0.194 4.194 14 C -0.153 4.153 15 C -0.013 4.013 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.155 4.155 25 C -0.223 4.223 26 C -0.191 4.191 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.176 0.824 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.324 2.372 -7.403 16.297 hybrid contribution 2.237 -0.227 0.692 2.352 sum -12.087 2.144 -6.711 13.990 Atomic orbital electron populations 1.20787 0.89574 1.03397 1.02683 1.20975 0.96507 0.87913 0.95913 1.67447 1.10148 1.29230 1.13246 1.22651 0.89384 0.98384 0.96184 1.22182 1.02048 0.93088 1.00490 1.21635 0.93558 0.99421 0.93747 1.21461 0.94962 0.97214 1.02744 1.20045 0.96390 0.85475 0.93100 0.89482 1.60785 1.15623 1.47321 1.07084 1.21600 0.96211 0.97903 0.87031 0.94633 1.21804 0.96757 1.01082 0.99765 1.21824 0.94520 0.99964 0.98960 1.19145 0.90850 0.95044 0.96265 1.21232 0.92155 1.11002 1.31350 0.92747 1.24981 0.98913 0.94955 0.95362 1.69939 1.22626 1.20645 1.40093 0.86630 0.82572 0.79136 0.79885 1.20676 1.21294 1.19944 1.22129 0.95181 1.01877 0.96305 1.23034 0.94143 1.03259 1.01852 1.22777 1.02957 0.90377 1.03007 0.90928 0.90854 0.90298 0.83193 0.84369 0.84102 0.82401 0.93759 0.92295 0.93069 0.92766 0.92383 0.96789 0.97023 0.93099 0.88379 0.88996 0.89174 0.89373 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.37 36.01 0.34 -0.93 16 2 C 0.13 1.92 6.78 -82.59 -0.56 1.36 16 3 N -0.49 -8.05 10.27 -9.47 -0.10 -8.15 16 4 C 0.09 1.42 11.18 -17.54 -0.20 1.23 16 5 C -0.16 -2.66 10.11 -39.44 -0.40 -3.06 16 6 C -0.06 -1.00 9.35 -39.28 -0.37 -1.37 16 7 C -0.16 -2.50 4.52 -104.48 -0.47 -2.97 16 8 C 0.16 2.24 1.61 -68.86 -0.11 2.13 16 9 H 0.09 1.16 5.25 -51.93 -0.27 0.89 16 10 N -0.67 -10.67 5.75 -100.95 -0.58 -11.25 16 11 C 0.08 1.38 2.49 -67.71 -0.17 1.21 16 12 H 0.04 0.66 7.57 -51.93 -0.39 0.27 16 13 C -0.14 -1.92 9.39 37.16 0.35 -1.57 16 14 C -0.11 -2.31 4.77 -26.73 -0.13 -2.43 16 15 C 0.02 0.58 4.79 -27.88 -0.13 0.45 16 16 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.14 -1.68 5.22 -90.62 -0.47 -2.15 16 25 C -0.19 -1.86 9.09 -26.69 -0.24 -2.10 16 26 C -0.15 -1.72 10.05 -26.69 -0.27 -1.99 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.82 4.55 -51.93 -0.24 0.58 16 30 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.14 2.64 4.69 -52.48 -0.25 2.39 16 33 H 0.35 6.25 4.25 -39.29 -0.17 6.09 16 34 H 0.04 0.56 7.11 -51.93 -0.37 0.19 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.01 0.35 5.04 -51.93 -0.26 0.09 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.10 1.28 8.08 -51.93 -0.42 0.87 16 43 H 0.09 0.85 7.29 -51.93 -0.38 0.47 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -28.96 360.87 -10.13 -39.09 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.36 Total: 8.61 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -3.24 Total: -25.24 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.06 Total: -44.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.96 -10.13 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.351 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.07 seconds