Wall clock time and date at job start Fri Apr 10 2020 19:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31893 * 119.61703 * 2 1 4 4 C 1.31849 * 121.72716 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.76293 * 0.02562 * 4 3 2 6 6 C 1.38628 * 119.15652 * 359.76854 * 5 4 3 7 7 C 1.38174 * 119.62126 * 180.02562 * 2 1 3 8 8 C 1.50710 * 120.41625 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.46807 * 328.66933 * 8 7 2 10 10 N 1.46895 * 109.47215 * 208.66973 * 8 7 2 11 11 C 1.46900 * 111.00222 * 82.53505 * 10 8 7 12 12 H 1.08997 * 109.47120 * 321.76404 * 11 10 8 13 13 C 1.52998 * 109.46945 * 81.76451 * 11 10 8 14 14 C 1.53005 * 109.46796 * 201.76492 * 11 10 8 15 15 C 1.52997 * 109.47190 * 65.00426 * 14 11 10 16 16 C 1.50704 * 109.46998 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99726 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99767 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00131 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47112 * 90.00211 * 20 18 16 22 22 H 1.48501 * 109.46994 * 210.00388 * 20 18 16 23 23 H 1.48500 * 109.47131 * 330.00071 * 20 18 16 24 24 C 1.52999 * 109.47090 * 88.66648 * 8 7 2 25 25 C 1.53002 * 117.49745 * 244.77807 * 24 8 7 26 26 C 1.52998 * 117.49938 * 176.11741 * 24 8 7 27 27 H 1.09001 * 109.47273 * 269.97734 * 1 2 3 28 28 H 1.09002 * 109.47383 * 29.97915 * 1 2 3 29 29 H 1.08999 * 109.46892 * 149.97261 * 1 2 3 30 30 H 1.08004 * 119.61962 * 179.97438 * 4 3 2 31 31 H 1.07991 * 120.41693 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.78198 * 180.23050 * 6 5 4 33 33 H 1.00909 * 110.99791 * 318.57840 * 10 8 7 34 34 H 1.08999 * 109.47170 * 304.62324 * 13 11 10 35 35 H 1.08999 * 109.47268 * 64.62481 * 13 11 10 36 36 H 1.08997 * 109.46857 * 184.62120 * 13 11 10 37 37 H 1.09004 * 109.46565 * 185.00160 * 14 11 10 38 38 H 1.09003 * 109.47051 * 304.99451 * 14 11 10 39 39 H 1.08997 * 109.46817 * 299.99215 * 15 14 11 40 40 H 1.08994 * 109.47366 * 59.99457 * 15 14 11 41 41 H 0.97005 * 120.00041 * 179.97438 * 19 18 16 42 42 H 1.09002 * 115.55104 * 30.44788 * 24 8 7 43 43 H 1.08996 * 117.49874 * 0.02562 * 25 24 8 44 44 H 1.09001 * 117.49912 * 145.01983 * 25 24 8 45 45 H 1.08998 * 117.49970 * 214.98058 * 26 24 8 46 46 H 1.08997 * 117.49884 * 0.02562 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1952 0.0005 5 6 4.2267 0.0341 0.0005 6 6 3.5766 -1.1902 0.0049 7 6 2.1899 -1.2012 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 1 0.4955 -2.3833 0.5342 10 7 2.2457 -3.5381 0.6633 11 6 2.0998 -3.4627 2.1231 12 1 2.0482 -2.4180 2.4296 13 6 0.8171 -4.1820 2.5453 14 6 3.3030 -4.1313 2.7911 15 6 4.5710 -3.3378 2.4696 16 6 5.7560 -3.9960 3.1280 17 1 5.6184 -4.8906 3.7173 18 6 7.0158 -3.4562 2.9783 19 7 7.1832 -2.3666 2.2612 20 14 8.4846 -4.2717 3.7950 21 1 9.0739 -5.2718 2.8688 22 1 9.5026 -3.2420 4.1246 23 1 8.0449 -4.9496 5.0409 24 6 1.1529 -2.9316 -1.4426 25 6 -0.3101 -2.9893 -1.8866 26 6 0.4729 -4.2849 -1.6595 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5143 30 1 3.9753 2.1531 0.0001 31 1 5.3057 0.0804 0.0013 32 1 4.1368 -2.1136 0.0087 33 1 3.2152 -3.4674 0.3927 34 1 -0.0308 -3.7590 2.0066 35 1 0.9024 -5.2435 2.3127 36 1 0.6660 -4.0560 3.6173 37 1 3.1528 -4.1545 3.8705 38 1 3.4069 -5.1498 2.4168 39 1 4.7211 -3.3146 1.3903 40 1 4.4670 -2.3194 2.8439 41 1 8.0695 -1.9865 2.1561 42 1 1.8905 -2.6151 -2.1801 43 1 -1.0700 -2.7243 -1.1515 44 1 -0.5350 -2.7112 -2.9163 45 1 0.7629 -4.8585 -2.5397 46 1 0.2277 -4.8724 -0.7748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:38 Heat of formation + Delta-G solvation = 27.067073 kcal Electronic energy + Delta-G solvation = -23831.738205 eV Core-core repulsion = 20720.619196 eV Total energy + Delta-G solvation = -3111.119009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -41.63984 -39.23522 -37.51948 -35.25184 -34.13216 -33.95292 -31.97996 -30.50560 -28.41616 -27.38848 -26.58427 -23.91849 -23.15527 -23.06528 -22.78620 -21.03677 -20.94061 -18.60302 -17.97953 -17.44071 -16.71838 -16.55957 -16.38845 -16.26675 -15.58568 -15.11361 -14.86115 -14.49315 -14.37320 -14.19236 -14.09675 -13.72576 -13.38013 -13.19377 -13.11948 -13.08992 -12.85647 -12.77196 -12.51981 -12.36652 -12.16200 -12.09327 -11.87413 -11.68276 -11.28126 -11.11997 -11.03410 -10.85877 -10.63896 -10.53384 -10.47380 -9.68509 -9.36700 -8.19140 -6.28554 0.13921 0.31198 1.38511 1.38744 1.49335 2.40013 2.78745 2.85981 3.13719 3.38920 3.45082 3.62450 3.83186 3.94506 4.05151 4.10890 4.17207 4.23691 4.32763 4.34687 4.41024 4.52652 4.62416 4.69011 4.73067 4.75897 4.78494 4.81117 4.92921 5.00268 5.03877 5.09189 5.15363 5.17154 5.23440 5.26843 5.31062 5.39503 5.43952 5.48733 5.54446 5.72250 5.79124 5.84982 6.22645 6.27371 6.39904 6.86130 6.99951 7.39724 8.91128 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.005312 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.714536 B = 5269.473905 C = 6340.601262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.120 3.880 3 N -0.503 5.503 4 C 0.090 3.910 5 C -0.178 4.178 6 C -0.076 4.076 7 C -0.161 4.161 8 C 0.168 3.832 9 H 0.101 0.899 10 N -0.671 5.671 11 C 0.090 3.910 12 H 0.016 0.984 13 C -0.128 4.128 14 C -0.105 4.105 15 C 0.036 3.964 16 C -0.544 4.544 17 H 0.054 0.946 18 C 0.008 3.992 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.267 1.267 24 C -0.155 4.155 25 C -0.161 4.161 26 C -0.154 4.154 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.177 0.823 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.338 0.662 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.004 0.996 40 H -0.023 1.023 41 H 0.261 0.739 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.605 1.443 -7.373 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.019 4.019 3 N -0.213 5.213 4 C -0.066 4.066 5 C -0.198 4.198 6 C -0.102 4.102 7 C -0.164 4.164 8 C 0.057 3.943 9 H 0.119 0.881 10 N -0.303 5.303 11 C -0.020 4.020 12 H 0.034 0.966 13 C -0.186 4.186 14 C -0.143 4.143 15 C -0.001 4.001 16 C -0.582 4.582 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.562 5.562 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.174 4.174 25 C -0.198 4.198 26 C -0.191 4.191 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.194 0.806 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.022 0.978 40 H -0.004 1.004 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.416 1.824 -7.481 18.132 hybrid contribution 2.899 -0.040 0.692 2.981 sum -13.516 1.784 -6.788 15.230 Atomic orbital electron populations 1.20890 0.86720 1.04766 1.03762 1.21594 0.98396 0.87323 0.94546 1.67556 1.10221 1.29767 1.13716 1.23013 0.89443 0.98901 0.95288 1.22232 1.01934 0.93741 1.01853 1.21572 0.94727 0.98720 0.95223 1.21638 0.94155 0.98486 1.02149 1.20116 0.95967 0.84023 0.94184 0.88103 1.60905 1.14898 1.48098 1.06412 1.21485 0.96242 0.96753 0.87502 0.96558 1.21729 0.95405 1.00886 1.00547 1.21669 0.94010 0.99376 0.99231 1.18953 0.92410 0.93517 0.95177 1.21661 0.93538 1.11298 1.31751 0.92762 1.25821 1.01820 0.95519 0.95907 1.70065 1.23317 1.21775 1.41000 0.85591 0.78959 0.78253 0.79104 1.19856 1.20929 1.19196 1.22001 0.96916 1.03666 0.94824 1.23149 0.92403 1.01271 1.03027 1.22802 1.02901 0.90295 1.03117 0.89810 0.89830 0.88599 0.80623 0.85168 0.86391 0.84023 0.91695 0.91937 0.92241 0.92902 0.92408 0.97781 1.00448 0.92972 0.89764 0.87411 0.87731 0.88814 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 9.37 71.24 0.67 -1.53 16 2 C 0.12 3.56 6.78 42.53 0.29 3.84 16 3 N -0.50 -16.20 10.27 -183.88 -1.89 -18.09 16 4 C 0.09 2.86 11.18 84.69 0.95 3.81 16 5 C -0.18 -6.35 10.11 22.36 0.23 -6.13 16 6 C -0.08 -2.81 9.35 22.47 0.21 -2.60 16 7 C -0.16 -5.06 4.52 -19.77 -0.09 -5.15 16 8 C 0.17 4.52 1.61 44.17 0.07 4.59 16 9 H 0.10 2.43 5.25 -2.39 -0.01 2.42 16 10 N -0.67 -21.29 5.75 -473.30 -2.72 -24.01 16 11 C 0.09 3.01 2.49 44.92 0.11 3.12 16 12 H 0.02 0.61 7.57 -2.39 -0.02 0.59 16 13 C -0.13 -3.32 9.39 71.98 0.68 -2.64 16 14 C -0.10 -4.29 4.77 30.59 0.15 -4.15 16 15 C 0.04 1.86 4.79 29.85 0.14 2.01 16 16 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.92 -54.34 13.29 21.45 0.28 -54.05 16 20 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.16 -3.61 5.22 -10.79 -0.06 -3.67 16 25 C -0.16 -2.70 9.09 30.62 0.28 -2.42 16 26 C -0.15 -3.10 10.05 30.62 0.31 -2.79 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 1.66 4.55 -2.39 -0.01 1.64 16 30 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.13 4.71 8.06 -2.92 -0.02 4.68 16 32 H 0.12 4.85 4.69 -2.91 -0.01 4.84 16 33 H 0.34 12.58 4.25 -89.69 -0.38 12.20 16 34 H 0.06 1.43 7.11 -2.39 -0.02 1.41 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.00 0.22 5.04 -2.39 -0.01 0.20 16 40 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 41 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 42 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 43 H 0.11 1.50 7.29 -2.39 -0.02 1.48 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -63.61 360.87 2.91 -60.70 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.58 Total: 32.53 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 4.62 Total: -43.26 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.33 Total: -96.15 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.61 2.91 -60.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.766 kcal (2) G-P(sol) polarization free energy of solvation -63.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds