Wall clock time and date at job start Fri Apr 10 2020 19:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31895 * 119.61218 * 2 1 4 4 C 1.31859 * 121.71786 * 180.31215 * 3 2 1 5 5 C 1.38225 * 120.76729 * 359.70579 * 4 3 2 6 6 C 1.38624 * 119.16173 * 359.97438 * 5 4 3 7 7 C 1.38175 * 119.62168 * 179.72936 * 2 1 3 8 8 C 1.50705 * 120.41722 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.46926 * 32.28808 * 8 7 2 10 10 N 1.46895 * 109.47184 * 152.28857 * 8 7 2 11 11 C 1.46900 * 111.00267 * 269.30022 * 10 8 7 12 12 H 1.09003 * 109.46787 * 325.25719 * 11 10 8 13 13 C 1.52994 * 109.47337 * 85.26013 * 11 10 8 14 14 C 1.53007 * 109.47106 * 205.26337 * 11 10 8 15 15 C 1.52993 * 109.47234 * 63.68885 * 14 11 10 16 16 C 1.50696 * 109.47293 * 184.64562 * 15 14 11 17 17 H 1.08007 * 119.99971 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00424 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00116 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00093 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47329 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47061 * 119.99813 * 20 18 16 23 23 H 1.48497 * 109.46965 * 239.99602 * 20 18 16 24 24 C 1.53002 * 109.46854 * 272.29022 * 8 7 2 25 25 C 1.53003 * 117.49652 * 247.75575 * 24 8 7 26 26 C 1.53001 * 117.49500 * 179.09809 * 24 8 7 27 27 H 1.09002 * 109.46904 * 270.26648 * 1 2 3 28 28 H 1.09000 * 109.47534 * 30.27053 * 1 2 3 29 29 H 1.09004 * 109.46586 * 150.27457 * 1 2 3 30 30 H 1.07996 * 119.60963 * 179.72472 * 4 3 2 31 31 H 1.07999 * 120.41670 * 179.97438 * 5 4 3 32 32 H 1.07999 * 120.78883 * 180.02562 * 6 5 4 33 33 H 1.00906 * 111.00006 * 33.25163 * 10 8 7 34 34 H 1.09001 * 109.47081 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47331 * 300.00021 * 13 11 10 36 36 H 1.09003 * 109.47422 * 60.00095 * 13 11 10 37 37 H 1.08999 * 109.46695 * 183.69159 * 14 11 10 38 38 H 1.09003 * 109.46699 * 303.68434 * 14 11 10 39 39 H 1.09007 * 109.46869 * 304.64205 * 15 14 11 40 40 H 1.08992 * 109.47507 * 64.64107 * 15 14 11 41 41 H 0.96998 * 120.00360 * 180.02562 * 19 18 16 42 42 H 1.08996 * 115.55355 * 33.42798 * 24 8 7 43 43 H 1.09000 * 117.50032 * 359.97438 * 25 24 8 44 44 H 1.08998 * 117.49425 * 145.02532 * 25 24 8 45 45 H 1.09002 * 117.49688 * 214.98155 * 26 24 8 46 46 H 1.08998 * 117.50291 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1467 0.0000 4 6 3.4765 1.1951 -0.0061 5 6 4.2267 0.0342 -0.0067 6 6 3.5767 -1.1901 -0.0002 7 6 2.1900 -1.2012 0.0057 8 6 1.4374 -2.5068 0.0124 9 1 0.5031 -2.3904 -0.5367 10 7 2.2548 -3.5465 -0.6268 11 6 1.9827 -3.6179 -2.0686 12 1 0.9294 -3.4043 -2.2505 13 6 2.8458 -2.5895 -2.8021 14 6 2.3144 -5.0208 -2.5814 15 6 1.3878 -6.0397 -1.9151 16 6 1.7885 -7.4312 -2.3323 17 1 2.6206 -7.5745 -3.0058 18 6 1.0922 -8.5214 -1.8552 19 7 0.0786 -8.3470 -1.0356 20 14 1.5885 -10.2463 -2.3731 21 1 2.7507 -10.1714 -3.2943 22 1 1.9587 -11.0366 -1.1715 23 1 0.4501 -10.9020 -3.0654 24 6 1.1333 -2.9127 1.4559 25 6 1.8443 -4.1506 2.0064 26 6 0.3510 -4.2091 1.6753 27 1 -0.3633 0.0048 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3632 -0.8925 -0.5096 30 1 3.9752 2.1530 -0.0104 31 1 5.3057 0.0805 -0.0121 32 1 4.1369 -2.1135 -0.0001 33 1 3.2366 -3.3934 -0.4513 34 1 2.6442 -2.6428 -3.8720 35 1 2.6094 -1.5900 -2.4368 36 1 3.8991 -2.8031 -2.6202 37 1 2.1751 -5.0550 -3.6619 38 1 3.3504 -5.2599 -2.3409 39 1 1.4666 -5.9484 -0.8317 40 1 0.3592 -5.8504 -2.2218 41 1 -0.4110 -9.1140 -0.6996 42 1 0.9480 -2.0900 2.1465 43 1 2.5284 -4.6761 1.3400 44 1 2.1264 -4.1424 3.0592 45 1 -0.3488 -4.2394 2.5105 46 1 0.0525 -4.7726 0.7913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:53 Heat of formation + Delta-G solvation = 50.445613 kcal Electronic energy + Delta-G solvation = -23632.078669 eV Core-core repulsion = 20521.973429 eV Total energy + Delta-G solvation = -3110.105240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -40.74505 -38.17413 -35.90182 -33.60797 -33.19822 -32.49694 -30.38112 -28.94433 -27.62127 -26.07780 -24.97863 -22.64551 -22.23290 -21.77133 -21.31391 -19.93485 -19.49539 -16.96032 -16.59907 -16.16670 -15.72990 -15.26770 -14.72530 -14.54022 -14.39397 -14.23801 -13.57786 -13.40696 -13.01973 -12.82718 -12.58509 -12.48500 -12.35338 -12.21300 -12.00369 -11.53408 -11.50809 -11.25090 -11.14194 -10.89201 -10.81109 -10.43360 -10.23818 -9.95349 -9.69475 -9.65542 -9.58954 -9.53392 -9.20849 -8.90436 -8.76829 -8.23570 -7.98753 -5.88578 -3.89017 1.02122 1.20203 3.35864 3.43585 3.47299 3.68132 4.13261 4.24796 4.41775 4.54253 4.66631 4.72286 4.77672 5.03930 5.17689 5.27378 5.39221 5.42297 5.46498 5.47360 5.51863 5.53304 5.56557 5.62776 5.67185 5.78881 5.88029 5.97580 6.06072 6.09095 6.15694 6.20569 6.25589 6.32703 6.41006 6.62889 6.64893 6.76576 6.86931 6.87712 7.29353 7.46580 7.71952 7.85292 7.91528 8.07644 8.23393 8.58124 9.19639 9.73564 11.22276 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.004115 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.239354 B = 6802.501129 C = 7326.230765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.129 3.871 3 N -0.485 5.485 4 C 0.091 3.909 5 C -0.176 4.176 6 C -0.069 4.069 7 C -0.142 4.142 8 C 0.159 3.841 9 H 0.093 0.907 10 N -0.658 5.658 11 C 0.085 3.915 12 H 0.071 0.929 13 C -0.180 4.180 14 C -0.098 4.098 15 C 0.029 3.971 16 C -0.517 4.517 17 H 0.050 0.950 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.884 3.116 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.154 4.154 25 C -0.162 4.162 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.336 0.664 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.005 0.995 41 H 0.257 0.743 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 17.555 4.009 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.008 4.008 3 N -0.195 5.195 4 C -0.066 4.066 5 C -0.196 4.196 6 C -0.096 4.096 7 C -0.145 4.145 8 C 0.048 3.952 9 H 0.111 0.889 10 N -0.290 5.290 11 C -0.025 4.025 12 H 0.090 0.910 13 C -0.239 4.239 14 C -0.137 4.137 15 C -0.008 4.008 16 C -0.556 4.556 17 H 0.068 0.932 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.712 3.288 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.173 4.173 25 C -0.200 4.200 26 C -0.197 4.197 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.692 17.699 4.252 18.573 hybrid contribution 1.376 -0.909 -0.540 1.735 sum 5.067 16.790 3.713 17.926 Atomic orbital electron populations 1.20798 0.88959 1.03533 1.03239 1.21126 0.96951 0.87712 0.95044 1.67507 1.10007 1.29341 1.12611 1.22650 0.89552 0.98273 0.96144 1.22056 1.01288 0.93415 1.02840 1.21414 0.94028 0.98428 0.95705 1.21558 0.94836 0.97626 1.00502 1.20108 0.95931 0.84570 0.94605 0.88939 1.60733 1.10318 1.46160 1.11738 1.21822 0.98718 0.96237 0.85709 0.91027 1.22600 1.00533 0.99318 1.01492 1.21638 1.00790 0.92710 0.98513 1.19017 0.93191 0.91324 0.97277 1.21369 1.14738 0.91960 1.27502 0.93211 1.24964 0.95221 0.98737 0.95342 1.69973 1.20467 1.29962 1.32845 0.86671 0.78359 0.85402 0.78330 1.19957 1.21157 1.21226 1.22164 1.07890 0.91944 0.95281 1.22872 0.96690 1.00345 1.00055 1.22901 0.94193 0.98974 1.03619 0.90266 0.90734 0.90156 0.83135 0.85045 0.84816 0.84242 0.92456 0.93624 0.92975 0.93662 0.93522 0.94454 0.97626 0.93350 0.88892 0.86826 0.90544 0.90038 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.77 36.01 0.35 -0.78 16 2 C 0.13 1.61 6.78 -82.59 -0.56 1.05 16 3 N -0.49 -6.21 10.28 -9.47 -0.10 -6.31 16 4 C 0.09 0.98 11.18 -17.54 -0.20 0.78 16 5 C -0.18 -1.77 10.11 -39.44 -0.40 -2.17 16 6 C -0.07 -0.78 8.17 -39.28 -0.32 -1.10 16 7 C -0.14 -1.73 3.54 -104.48 -0.37 -2.10 16 8 C 0.16 2.10 2.16 -68.86 -0.15 1.95 16 9 H 0.09 1.27 5.23 -51.93 -0.27 1.00 16 10 N -0.66 -9.73 3.56 -100.95 -0.36 -10.09 16 11 C 0.08 1.35 2.60 -67.71 -0.18 1.17 16 12 H 0.07 1.20 7.37 -51.93 -0.38 0.81 16 13 C -0.18 -2.44 8.40 37.15 0.31 -2.13 16 14 C -0.10 -1.96 4.84 -26.73 -0.13 -2.09 16 15 C 0.03 0.73 4.91 -27.89 -0.14 0.59 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 17 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 20 Si 0.88 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.15 -2.06 5.70 -90.62 -0.52 -2.58 16 25 C -0.16 -2.39 9.85 -26.69 -0.26 -2.65 16 26 C -0.16 -2.46 10.19 -26.69 -0.27 -2.74 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.82 5.98 -51.93 -0.31 0.51 16 30 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.41 6.03 -52.49 -0.32 1.09 16 33 H 0.34 4.60 5.55 -39.29 -0.22 4.38 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.60 6.22 -51.93 -0.32 0.28 16 36 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.99 7.58 -51.93 -0.39 0.59 16 40 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 43 H 0.11 1.87 6.93 -51.93 -0.36 1.51 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -30.46 363.31 -10.11 -40.57 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.61 Total: 5.65 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -3.23 Total: -26.16 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.28 Total: -42.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.46 -10.11 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.012 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds