Wall clock time and date at job start Fri Apr 10 2020 19:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31882 * 119.61775 * 2 1 4 4 C 1.31857 * 121.72540 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.76392 * 359.97438 * 4 3 2 6 6 C 1.38626 * 119.15835 * 359.72944 * 5 4 3 7 7 C 1.38178 * 119.61641 * 179.97438 * 2 1 3 8 8 C 1.50708 * 120.41824 * 359.97244 * 7 2 1 9 9 H 1.08997 * 109.46812 * 325.00680 * 8 7 2 10 10 N 1.46899 * 109.47397 * 205.00284 * 8 7 2 11 11 C 1.46905 * 110.99856 * 88.23340 * 10 8 7 12 12 H 1.09001 * 109.46914 * 31.75677 * 11 10 8 13 13 C 1.53005 * 109.47099 * 271.75686 * 11 10 8 14 14 C 1.52992 * 109.46731 * 151.75827 * 11 10 8 15 15 C 1.53003 * 109.47306 * 294.37690 * 14 11 10 16 16 C 1.50704 * 109.47484 * 184.23228 * 15 14 11 17 17 H 1.07998 * 119.99290 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00242 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00330 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99776 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47151 * 90.00608 * 20 18 16 22 22 H 1.48506 * 109.47139 * 210.00153 * 20 18 16 23 23 H 1.48498 * 109.47554 * 330.00297 * 20 18 16 24 24 C 1.53001 * 109.46601 * 85.00298 * 8 7 2 25 25 C 1.52997 * 117.49859 * 107.98901 * 24 8 7 26 26 C 1.53003 * 117.49499 * 176.64492 * 24 8 7 27 27 H 1.08999 * 109.47140 * 270.02633 * 1 2 3 28 28 H 1.09001 * 109.46641 * 30.02196 * 1 2 3 29 29 H 1.08999 * 109.47056 * 150.02191 * 1 2 3 30 30 H 1.08001 * 119.61662 * 179.97438 * 4 3 2 31 31 H 1.07993 * 120.42042 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.79003 * 180.27522 * 6 5 4 33 33 H 1.00893 * 110.99891 * 212.19261 * 10 8 7 34 34 H 1.09001 * 109.46902 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.47096 * 300.00289 * 13 11 10 36 36 H 1.09004 * 109.46951 * 59.99949 * 13 11 10 37 37 H 1.09003 * 109.47569 * 54.37824 * 14 11 10 38 38 H 1.08998 * 109.47270 * 174.38205 * 14 11 10 39 39 H 1.08996 * 109.47052 * 304.23370 * 15 14 11 40 40 H 1.09000 * 109.47176 * 64.23069 * 15 14 11 41 41 H 0.96997 * 120.00246 * 179.97438 * 19 18 16 42 42 H 1.08995 * 115.55308 * 322.30882 * 24 8 7 43 43 H 1.09002 * 117.49952 * 215.00283 * 25 24 8 44 44 H 1.09007 * 117.49831 * 0.02562 * 25 24 8 45 45 H 1.09000 * 117.50104 * 359.97438 * 26 24 8 46 46 H 1.09002 * 117.49932 * 144.97292 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0005 5 6 4.2267 0.0340 -0.0005 6 6 3.5766 -1.1903 0.0057 7 6 2.1899 -1.2013 0.0005 8 6 1.4371 -2.5069 0.0017 9 1 0.5266 -2.4007 0.5914 10 7 2.2802 -3.5577 0.5875 11 6 2.1118 -3.6158 2.0457 12 1 1.0924 -3.3305 2.3054 13 6 3.0965 -2.6525 2.7116 14 6 2.3828 -5.0402 2.5338 15 6 1.3125 -5.9820 1.9785 16 6 1.5183 -7.3645 2.5420 17 1 2.3310 -7.5524 3.2281 18 6 0.6693 -8.3893 2.1818 19 7 0.8491 -9.5958 2.6732 20 14 -0.7367 -8.0639 0.9958 21 1 -0.2729 -8.2921 -0.3963 22 1 -1.8630 -8.9831 1.2991 23 1 -1.1922 -6.6581 1.1416 24 6 1.0730 -2.8868 -1.4349 25 6 1.8320 -4.0529 -2.0712 26 6 0.3697 -4.2278 -1.6543 27 1 -0.3633 0.0005 1.0277 28 1 -0.3632 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 3.9753 2.1529 -0.0009 31 1 5.3057 0.0802 -0.0005 32 1 4.1367 -2.1138 0.0103 33 1 2.0871 -4.4534 0.1651 34 1 2.9718 -2.6960 3.7936 35 1 4.1158 -2.9378 2.4518 36 1 2.9034 -1.6376 2.3637 37 1 3.3651 -5.3622 2.1879 38 1 2.3561 -5.0622 3.6233 39 1 0.3252 -5.6174 2.2619 40 1 1.3884 -6.0177 0.8917 41 1 0.2516 -10.3167 2.4201 42 1 0.7890 -2.0577 -2.0829 43 1 2.0476 -3.9909 -3.1379 44 1 2.5906 -4.5497 -1.4662 45 1 0.1667 -4.8394 -0.7752 46 1 -0.3773 -4.2807 -2.4464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:57 Heat of formation + Delta-G solvation = 49.433354 kcal Electronic energy + Delta-G solvation = -23747.684562 eV Core-core repulsion = 20637.535427 eV Total energy + Delta-G solvation = -3110.149134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63192 -38.59889 -36.11076 -33.62570 -33.08950 -32.51246 -30.65377 -29.47441 -27.67907 -26.19600 -25.18674 -22.64374 -22.39972 -21.91096 -21.23799 -19.75786 -19.69017 -17.15398 -16.74635 -16.48777 -16.08105 -15.36493 -14.74636 -14.67458 -14.42444 -14.17447 -13.73411 -13.28670 -13.04735 -12.97625 -12.76144 -12.60449 -12.42613 -12.27885 -11.96344 -11.84668 -11.67099 -11.55827 -11.44892 -11.21586 -10.94635 -10.67466 -10.36259 -10.07067 -10.01674 -9.82887 -9.62364 -9.44252 -9.39184 -9.23009 -8.71976 -8.59509 -8.28600 -6.09076 -4.07379 1.10909 1.39168 3.24554 3.32786 3.33546 3.72333 3.80548 4.26935 4.33437 4.39283 4.61773 4.75629 4.91178 4.97407 5.01264 5.06261 5.16686 5.24042 5.32944 5.39646 5.45989 5.52169 5.57704 5.60357 5.67984 5.72641 5.73763 5.82577 5.90193 5.97846 6.06335 6.13312 6.18552 6.23315 6.28733 6.32742 6.38558 6.45826 6.67242 6.75812 6.78788 7.19689 7.21599 7.42440 7.61642 7.73953 8.00290 8.49197 8.96325 9.53137 11.04457 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.004640 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.672518 B = 6033.361511 C = 6646.157178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.123 3.877 3 N -0.490 5.490 4 C 0.091 3.909 5 C -0.189 4.189 6 C -0.036 4.036 7 C -0.110 4.110 8 C 0.157 3.843 9 H 0.064 0.936 10 N -0.683 5.683 11 C 0.081 3.919 12 H 0.041 0.959 13 C -0.137 4.137 14 C -0.108 4.108 15 C -0.013 4.013 16 C -0.520 4.520 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.267 1.267 24 C -0.156 4.156 25 C -0.171 4.171 26 C -0.186 4.186 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.146 0.854 33 H 0.355 0.645 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.012 0.988 40 H 0.007 0.993 41 H 0.263 0.737 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 18.931 -8.183 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.015 4.015 3 N -0.200 5.200 4 C -0.067 4.067 5 C -0.208 4.208 6 C -0.062 4.062 7 C -0.113 4.113 8 C 0.046 3.954 9 H 0.081 0.919 10 N -0.320 5.320 11 C -0.029 4.029 12 H 0.059 0.941 13 C -0.195 4.195 14 C -0.146 4.146 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.704 3.296 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.175 4.175 25 C -0.209 4.209 26 C -0.223 4.223 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.496 19.886 -8.148 21.635 hybrid contribution -1.044 -1.158 -0.523 1.645 sum 1.452 18.728 -8.671 20.689 Atomic orbital electron populations 1.20780 0.89404 1.03358 1.03059 1.21067 0.96705 0.87954 0.95771 1.67484 1.10056 1.29094 1.13366 1.22617 0.89538 0.98276 0.96230 1.22158 1.01254 0.93679 1.03755 1.21579 0.93983 0.98417 0.92182 1.20599 0.94752 0.94859 1.01089 1.19856 0.93232 0.89255 0.93030 0.91872 1.60699 1.56652 1.09716 1.04967 1.21759 0.97364 0.97075 0.86666 0.94084 1.21875 0.99894 0.98547 0.99206 1.21704 1.00635 0.91609 1.00665 1.19607 0.94332 0.95807 0.95333 1.21111 1.14925 0.91711 1.28000 0.90994 1.25032 0.97420 0.94996 0.95937 1.69908 1.38598 1.01012 1.44584 0.86833 0.82511 0.78464 0.81821 1.20071 1.21385 1.19141 1.22427 1.05798 0.92655 0.96583 1.23045 0.95232 1.01506 1.01077 1.23121 0.95971 0.99246 1.03968 0.90569 0.90720 0.90467 0.83373 0.85268 0.83581 0.81936 0.93065 0.92343 0.93495 0.91945 0.91883 0.96972 0.97509 0.92717 0.87529 0.88880 0.87194 0.88375 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.39 36.01 0.34 -0.80 16 2 C 0.12 1.55 6.78 -82.59 -0.56 0.99 16 3 N -0.49 -6.41 10.27 -9.47 -0.10 -6.51 16 4 C 0.09 1.01 11.18 -17.54 -0.20 0.81 16 5 C -0.19 -2.00 10.11 -39.44 -0.40 -2.40 16 6 C -0.04 -0.43 7.63 -39.28 -0.30 -0.73 16 7 C -0.11 -1.38 3.83 -104.48 -0.40 -1.78 16 8 C 0.16 2.02 1.93 -68.86 -0.13 1.88 16 9 H 0.06 0.85 6.19 -51.93 -0.32 0.53 16 10 N -0.68 -9.73 4.48 -100.95 -0.45 -10.19 16 11 C 0.08 1.25 2.65 -67.71 -0.18 1.07 16 12 H 0.04 0.67 7.33 -51.93 -0.38 0.29 16 13 C -0.14 -1.90 8.56 37.16 0.32 -1.58 16 14 C -0.11 -2.04 4.71 -26.73 -0.13 -2.17 16 15 C -0.01 -0.30 3.81 -27.88 -0.11 -0.41 16 16 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 17 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 20 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 24 C -0.16 -1.86 5.02 -90.62 -0.46 -2.31 16 25 C -0.17 -2.08 9.66 -26.70 -0.26 -2.33 16 26 C -0.19 -2.38 9.83 -26.69 -0.26 -2.64 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.75 5.98 -51.93 -0.31 0.44 16 30 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 1.78 7.35 -52.48 -0.39 1.40 16 33 H 0.36 5.52 3.22 -39.30 -0.13 5.39 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.64 5.88 -51.93 -0.31 0.34 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 40 H 0.01 0.15 5.96 -51.93 -0.31 -0.16 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.11 1.18 7.88 -51.93 -0.41 0.77 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.11 1.44 6.24 -51.93 -0.32 1.12 16 45 H 0.10 1.48 7.66 -51.93 -0.40 1.08 16 46 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -30.12 355.60 -9.69 -39.81 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.46 Total: 7.16 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -3.15 Total: -25.37 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.22 Total: -43.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.12 -9.69 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.243 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds