Wall clock time and date at job start Fri Apr 10 2020 19:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31882 * 119.61775 * 2 1 4 4 C 1.31857 * 121.72540 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.76392 * 359.97438 * 4 3 2 6 6 C 1.38626 * 119.15835 * 359.72944 * 5 4 3 7 7 C 1.38178 * 119.61641 * 179.97438 * 2 1 3 8 8 C 1.50708 * 120.41824 * 359.97244 * 7 2 1 9 9 H 1.08997 * 109.46812 * 325.00680 * 8 7 2 10 10 N 1.46899 * 109.47397 * 205.00284 * 8 7 2 11 11 C 1.46905 * 110.99856 * 88.23340 * 10 8 7 12 12 H 1.09001 * 109.46914 * 31.75677 * 11 10 8 13 13 C 1.53005 * 109.47099 * 271.75686 * 11 10 8 14 14 C 1.52992 * 109.46731 * 151.75827 * 11 10 8 15 15 C 1.53003 * 109.47306 * 294.37690 * 14 11 10 16 16 C 1.50704 * 109.47484 * 184.23228 * 15 14 11 17 17 H 1.07998 * 119.99290 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00242 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00330 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99776 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47151 * 90.00608 * 20 18 16 22 22 H 1.48506 * 109.47139 * 210.00153 * 20 18 16 23 23 H 1.48498 * 109.47554 * 330.00297 * 20 18 16 24 24 C 1.53001 * 109.46601 * 85.00298 * 8 7 2 25 25 C 1.52997 * 117.49859 * 107.98901 * 24 8 7 26 26 C 1.53003 * 117.49499 * 176.64492 * 24 8 7 27 27 H 1.08999 * 109.47140 * 270.02633 * 1 2 3 28 28 H 1.09001 * 109.46641 * 30.02196 * 1 2 3 29 29 H 1.08999 * 109.47056 * 150.02191 * 1 2 3 30 30 H 1.08001 * 119.61662 * 179.97438 * 4 3 2 31 31 H 1.07993 * 120.42042 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.79003 * 180.27522 * 6 5 4 33 33 H 1.00893 * 110.99891 * 212.19261 * 10 8 7 34 34 H 1.09001 * 109.46902 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.47096 * 300.00289 * 13 11 10 36 36 H 1.09004 * 109.46951 * 59.99949 * 13 11 10 37 37 H 1.09003 * 109.47569 * 54.37824 * 14 11 10 38 38 H 1.08998 * 109.47270 * 174.38205 * 14 11 10 39 39 H 1.08996 * 109.47052 * 304.23370 * 15 14 11 40 40 H 1.09000 * 109.47176 * 64.23069 * 15 14 11 41 41 H 0.96997 * 120.00246 * 179.97438 * 19 18 16 42 42 H 1.08995 * 115.55308 * 322.30882 * 24 8 7 43 43 H 1.09002 * 117.49952 * 215.00283 * 25 24 8 44 44 H 1.09007 * 117.49831 * 0.02562 * 25 24 8 45 45 H 1.09000 * 117.50104 * 359.97438 * 26 24 8 46 46 H 1.09002 * 117.49932 * 144.97292 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0005 5 6 4.2267 0.0340 -0.0005 6 6 3.5766 -1.1903 0.0057 7 6 2.1899 -1.2013 0.0005 8 6 1.4371 -2.5069 0.0017 9 1 0.5266 -2.4007 0.5914 10 7 2.2802 -3.5577 0.5875 11 6 2.1118 -3.6158 2.0457 12 1 1.0924 -3.3305 2.3054 13 6 3.0965 -2.6525 2.7116 14 6 2.3828 -5.0402 2.5338 15 6 1.3125 -5.9820 1.9785 16 6 1.5183 -7.3645 2.5420 17 1 2.3310 -7.5524 3.2281 18 6 0.6693 -8.3893 2.1818 19 7 0.8491 -9.5958 2.6732 20 14 -0.7367 -8.0639 0.9958 21 1 -0.2729 -8.2921 -0.3963 22 1 -1.8630 -8.9831 1.2991 23 1 -1.1922 -6.6581 1.1416 24 6 1.0730 -2.8868 -1.4349 25 6 1.8320 -4.0529 -2.0712 26 6 0.3697 -4.2278 -1.6543 27 1 -0.3633 0.0005 1.0277 28 1 -0.3632 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 3.9753 2.1529 -0.0009 31 1 5.3057 0.0802 -0.0005 32 1 4.1367 -2.1138 0.0103 33 1 2.0871 -4.4534 0.1651 34 1 2.9718 -2.6960 3.7936 35 1 4.1158 -2.9378 2.4518 36 1 2.9034 -1.6376 2.3637 37 1 3.3651 -5.3622 2.1879 38 1 2.3561 -5.0622 3.6233 39 1 0.3252 -5.6174 2.2619 40 1 1.3884 -6.0177 0.8917 41 1 0.2516 -10.3167 2.4201 42 1 0.7890 -2.0577 -2.0829 43 1 2.0476 -3.9909 -3.1379 44 1 2.5906 -4.5497 -1.4662 45 1 0.1667 -4.8394 -0.7752 46 1 -0.3773 -4.2807 -2.4464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:56 Heat of formation + Delta-G solvation = 33.143397 kcal Electronic energy + Delta-G solvation = -23748.390947 eV Core-core repulsion = 20637.535427 eV Total energy + Delta-G solvation = -3110.855520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55278 -39.62726 -37.37502 -35.20715 -34.18983 -33.77341 -32.15340 -30.79700 -28.54117 -27.30673 -26.84616 -23.59046 -23.36073 -23.00498 -22.69558 -21.20524 -20.68074 -19.02423 -17.85214 -17.45253 -17.14316 -16.42842 -16.37124 -15.89824 -15.55168 -15.20932 -14.96599 -14.66325 -14.42698 -14.30410 -13.92686 -13.81207 -13.43802 -13.32916 -13.22851 -13.05151 -12.89830 -12.83979 -12.57457 -12.42251 -12.26608 -12.07792 -11.81799 -11.58748 -11.41168 -11.32410 -11.16378 -10.99486 -10.77125 -10.42018 -10.28784 -9.60428 -9.43114 -8.30414 -6.34581 0.24987 0.50119 1.33423 1.35354 1.45897 2.33899 2.76978 2.91097 3.04808 3.20768 3.48768 3.68652 3.81157 3.99691 4.01333 4.06387 4.13100 4.18952 4.26455 4.32922 4.38514 4.48755 4.61261 4.68815 4.73356 4.75006 4.78237 4.78913 4.85846 4.87437 4.96192 4.98862 5.00823 5.08813 5.18160 5.21670 5.27646 5.37028 5.43069 5.47006 5.50481 5.57885 5.65178 5.91265 6.16848 6.27656 6.40117 6.73816 7.13750 7.30095 8.86534 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.021244 B = 0.004640 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.672518 B = 6033.361511 C = 6646.157178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.111 3.889 3 N -0.512 5.512 4 C 0.085 3.915 5 C -0.184 4.184 6 C -0.045 4.045 7 C -0.117 4.117 8 C 0.159 3.841 9 H 0.058 0.942 10 N -0.679 5.679 11 C 0.091 3.909 12 H 0.037 0.963 13 C -0.128 4.128 14 C -0.100 4.100 15 C -0.005 4.005 16 C -0.531 4.531 17 H 0.030 0.970 18 C 0.006 3.994 19 N -0.952 5.952 20 Si 0.946 3.054 21 H -0.261 1.261 22 H -0.287 1.287 23 H -0.246 1.246 24 C -0.147 4.147 25 C -0.172 4.172 26 C -0.193 4.193 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.348 0.652 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.012 0.988 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 21.204 -9.895 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.027 4.027 3 N -0.222 5.222 4 C -0.072 4.072 5 C -0.204 4.204 6 C -0.071 4.071 7 C -0.120 4.120 8 C 0.049 3.951 9 H 0.076 0.924 10 N -0.315 5.315 11 C -0.019 4.019 12 H 0.055 0.945 13 C -0.185 4.185 14 C -0.138 4.138 15 C -0.043 4.043 16 C -0.569 4.569 17 H 0.049 0.951 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.769 3.231 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.170 1.170 24 C -0.166 4.166 25 C -0.209 4.209 26 C -0.230 4.230 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.192 0.808 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.108 22.187 -9.857 24.370 hybrid contribution -0.808 -1.870 0.076 2.039 sum 1.300 20.317 -9.781 22.586 Atomic orbital electron populations 1.20807 0.88409 1.03906 1.03344 1.21320 0.97582 0.87891 0.95861 1.67530 1.11112 1.29372 1.14139 1.23112 0.89155 0.99667 0.95265 1.22417 1.02565 0.92900 1.02519 1.21651 0.93906 0.98932 0.92615 1.20536 0.94997 0.94495 1.01991 1.19843 0.92812 0.88991 0.93464 0.92387 1.60730 1.57111 1.09696 1.03981 1.21596 0.97652 0.94949 0.87686 0.94507 1.21772 0.99418 0.98142 0.99208 1.21565 0.99097 0.93146 0.99994 1.19504 0.95419 0.93531 0.95832 1.21479 1.13646 0.94528 1.27252 0.95145 1.26004 1.00564 0.94530 0.98004 1.70070 1.40226 1.02296 1.46636 0.85720 0.78524 0.79273 0.79548 1.18559 1.21353 1.16999 1.22415 1.05281 0.92750 0.96121 1.23079 0.94556 1.01345 1.01887 1.23114 0.96796 0.99445 1.03657 0.90382 0.90212 0.89862 0.80821 0.82774 0.84003 0.82760 0.92728 0.92056 0.92976 0.92491 0.92811 0.96983 0.96241 0.92557 0.86231 0.87213 0.88430 0.90681 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.39 71.24 0.67 -1.39 16 2 C 0.11 2.58 6.78 42.54 0.29 2.87 16 3 N -0.51 -12.31 10.27 -183.88 -1.89 -14.20 16 4 C 0.08 1.67 11.18 84.69 0.95 2.61 16 5 C -0.18 -3.42 10.11 22.36 0.23 -3.20 16 6 C -0.05 -0.99 7.63 22.47 0.17 -0.82 16 7 C -0.12 -2.72 3.83 -19.77 -0.08 -2.79 16 8 C 0.16 3.82 1.93 44.17 0.09 3.91 16 9 H 0.06 1.47 6.19 -2.39 -0.01 1.46 16 10 N -0.68 -18.49 4.48 -473.29 -2.12 -20.61 16 11 C 0.09 2.72 2.65 44.91 0.12 2.84 16 12 H 0.04 1.15 7.33 -2.39 -0.02 1.14 16 13 C -0.13 -3.34 8.56 71.98 0.62 -2.73 16 14 C -0.10 -3.77 4.71 30.59 0.14 -3.63 16 15 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 16 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 17 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 18 C 0.01 0.33 5.47 84.65 0.46 0.79 16 19 N -0.95 -59.64 13.96 21.44 0.30 -59.34 16 20 Si 0.95 43.45 27.47 68.60 1.88 45.33 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 24 C -0.15 -3.18 5.02 -10.79 -0.05 -3.24 16 25 C -0.17 -3.81 9.66 30.62 0.30 -3.51 16 26 C -0.19 -4.52 9.83 30.62 0.30 -4.22 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.46 5.98 -2.39 -0.01 1.44 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.14 3.22 7.35 -2.91 -0.02 3.19 16 33 H 0.35 10.44 3.22 -89.70 -0.29 10.15 16 34 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.33 5.88 -2.39 -0.01 1.31 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 40 H 0.02 0.83 5.96 -2.39 -0.01 0.82 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.12 2.31 7.88 -2.39 -0.02 2.29 16 43 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.10 2.43 6.24 -2.38 -0.01 2.42 16 45 H 0.07 2.13 7.66 -2.39 -0.02 2.11 16 46 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -65.65 355.60 3.34 -62.30 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.61 Total: 29.22 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 4.56 Total: -42.70 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -3.71 Total: -94.15 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.33 kcal Total: -65.65 3.34 -62.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.444 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds