Wall clock time and date at job start Fri Apr 10 2020 19:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30801 * 126.24940 * 2 1 4 4 N 1.28678 * 110.29312 * 180.02562 * 3 2 1 5 5 C 1.32298 * 109.48118 * 359.97438 * 4 3 2 6 6 C 1.40827 * 133.46624 * 179.97438 * 5 4 3 7 7 C 1.36014 * 119.22606 * 180.27721 * 6 5 4 8 8 C 1.40547 * 119.74967 * 359.45011 * 7 6 5 9 9 C 1.50697 * 119.82062 * 180.31525 * 8 7 6 10 10 N 1.46896 * 109.47142 * 270.28118 * 9 8 7 11 11 C 1.46906 * 110.99886 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47455 * 34.99915 * 11 10 9 13 13 C 1.53006 * 109.46909 * 274.99726 * 11 10 9 14 14 C 1.52999 * 109.46963 * 155.00089 * 11 10 9 15 15 C 1.52995 * 109.47293 * 294.99567 * 14 11 10 16 16 C 1.50702 * 109.47636 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99247 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00386 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47101 * 89.99774 * 20 18 16 22 22 H 1.48504 * 109.46988 * 209.99891 * 20 18 16 23 23 H 1.48496 * 109.46857 * 329.99821 * 20 18 16 24 24 C 1.34956 * 120.36329 * 0.59409 * 8 7 6 25 25 N 1.36066 * 126.24448 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47530 * 269.97658 * 1 2 3 27 27 H 1.09002 * 109.47093 * 29.98115 * 1 2 3 28 28 H 1.08999 * 109.47073 * 149.97127 * 1 2 3 29 29 H 1.08002 * 120.38322 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.12680 * 179.74189 * 7 6 5 31 31 H 1.09006 * 109.47296 * 30.28003 * 9 8 7 32 32 H 1.09001 * 109.47502 * 150.27997 * 9 8 7 33 33 H 1.00901 * 111.00455 * 56.04774 * 10 9 8 34 34 H 1.08998 * 109.47049 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.47031 * 300.00036 * 13 11 10 36 36 H 1.08996 * 109.47044 * 59.99848 * 13 11 10 37 37 H 1.08998 * 109.47550 * 54.99885 * 14 11 10 38 38 H 1.09006 * 109.47188 * 174.99358 * 14 11 10 39 39 H 1.09004 * 109.47359 * 300.00285 * 15 14 11 40 40 H 1.09006 * 109.47175 * 59.99782 * 15 14 11 41 41 H 0.97000 * 120.00138 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.74622 * 179.69320 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0548 0.0000 4 7 3.5176 0.7011 -0.0005 5 6 3.5990 -0.6194 -0.0004 6 6 4.6787 -1.5235 -0.0012 7 6 4.4258 -2.8599 -0.0064 8 6 3.0972 -3.3183 0.0008 9 6 2.8153 -4.7987 0.0022 10 7 2.7227 -5.2808 -1.3823 11 6 2.4473 -6.7233 -1.4201 12 1 1.7965 -6.9909 -0.5878 13 6 3.7628 -7.4968 -1.3081 14 6 1.7588 -7.0766 -2.7400 15 6 0.3872 -6.4012 -2.7965 16 6 -0.2913 -6.7496 -4.0963 17 1 0.2060 -7.3893 -4.8103 18 6 -1.5467 -6.2519 -4.3737 19 7 -2.1525 -5.4733 -3.5039 20 14 -2.3880 -6.6844 -5.9845 21 1 -3.1895 -7.9220 -5.8076 22 1 -3.2812 -5.5700 -6.3913 23 1 -1.3619 -6.9051 -7.0351 24 6 2.0725 -2.4401 0.0008 25 7 2.3115 -1.0974 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 5.6957 -1.1599 -0.0026 30 1 5.2428 -3.5662 -0.0114 31 1 3.6219 -5.3218 0.5159 32 1 1.8733 -4.9887 0.5168 33 1 3.5602 -5.0586 -1.8994 34 1 3.5585 -8.5671 -1.3366 35 1 4.4136 -7.2292 -2.1405 36 1 4.2533 -7.2450 -0.3679 37 1 2.3697 -6.7288 -3.5730 38 1 1.6346 -8.1575 -2.8071 39 1 -0.2237 -6.7490 -1.9635 40 1 0.5114 -5.3203 -2.7294 41 1 -3.0356 -5.1228 -3.6992 42 1 1.0555 -2.8033 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:03 Heat of formation + Delta-G solvation = 88.849261 kcal Electronic energy + Delta-G solvation = -22258.846670 eV Core-core repulsion = 19046.866394 eV Total energy + Delta-G solvation = -3211.980276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.56264 -38.87540 -37.07464 -34.44123 -33.61670 -32.54821 -31.34826 -30.20442 -28.85815 -27.45912 -25.70008 -24.91429 -23.79356 -22.40378 -21.48207 -21.25445 -19.93983 -18.04292 -17.24232 -16.68938 -16.20476 -15.87556 -15.32097 -14.98116 -14.53844 -14.27873 -14.16188 -13.65102 -13.36926 -12.98565 -12.80998 -12.62129 -12.53547 -12.39195 -12.23985 -12.07358 -11.76853 -11.60118 -11.37163 -11.23553 -11.14946 -10.88379 -10.57787 -10.49696 -10.33386 -9.73780 -9.47452 -9.30365 -8.98552 -8.30998 -8.11582 -8.04299 -5.96066 -3.96686 0.53217 0.98907 2.22969 2.63625 3.19545 3.32579 3.39234 3.42456 3.94010 4.24081 4.38336 4.44862 4.48628 4.64661 4.68956 4.73711 5.10862 5.22085 5.25500 5.31336 5.33666 5.40328 5.45365 5.54697 5.59554 5.64626 5.71681 5.85809 5.93734 5.98036 6.08435 6.17007 6.24521 6.28242 6.55439 6.78751 6.79452 7.18369 7.31086 7.60055 7.76819 7.99010 8.13182 8.49167 8.50345 9.11780 9.66526 11.15103 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.004182 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.193293 B = 6693.474490 C = 8370.044484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.146 3.854 3 N -0.256 5.256 4 N -0.297 5.297 5 C 0.190 3.810 6 C -0.086 4.086 7 C -0.075 4.075 8 C -0.101 4.101 9 C 0.107 3.893 10 N -0.668 5.668 11 C 0.084 3.916 12 H 0.074 0.926 13 C -0.181 4.181 14 C -0.099 4.099 15 C 0.030 3.970 16 C -0.519 4.519 17 H 0.051 0.949 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.886 3.114 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.092 3.908 25 N -0.387 5.387 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.338 0.662 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.007 0.993 40 H 0.031 0.969 41 H 0.258 0.742 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.492 3.243 10.758 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 N -0.096 5.096 4 N -0.143 5.143 5 C -0.059 4.059 6 C -0.108 4.108 7 C -0.100 4.100 8 C -0.105 4.105 9 C -0.022 4.022 10 N -0.298 5.298 11 C -0.025 4.025 12 H 0.092 0.908 13 C -0.240 4.240 14 C -0.137 4.137 15 C -0.007 4.007 16 C -0.557 4.557 17 H 0.069 0.931 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.714 3.286 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.031 4.031 25 N -0.066 5.066 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.989 5.159 10.709 16.188 hybrid contribution -0.028 -1.925 -0.725 2.057 sum 10.962 3.234 9.984 15.175 Atomic orbital electron populations 1.20260 0.82915 1.05311 1.04091 1.24930 0.97083 0.80839 1.08811 1.74175 0.96596 1.23560 1.15306 1.74900 1.11051 1.06144 1.22176 1.22310 0.85136 0.92768 1.05684 1.20173 0.97107 0.90885 1.02610 1.21121 0.96556 0.95165 0.97159 1.19512 0.91914 0.96493 1.02551 1.20783 1.01651 0.87832 0.91950 1.60604 1.42753 1.15802 1.10681 1.21771 0.94790 0.85013 1.00930 0.90767 1.22544 0.99073 1.01740 1.00683 1.21636 0.99403 0.99266 0.93388 1.18991 0.89050 0.96851 0.95804 1.21347 1.01296 1.29497 1.03590 0.93107 1.24973 0.97472 0.95288 0.96578 1.69960 1.14601 1.33887 1.35147 0.86689 0.79538 0.77939 0.84386 1.20796 1.21301 1.19993 1.21605 1.02163 0.79042 1.00286 1.43697 1.08710 1.07146 1.47077 0.89606 0.88440 0.89608 0.82746 0.83818 0.93868 0.89568 0.84392 0.92087 0.92695 0.93656 0.93431 0.93358 0.97491 0.95079 0.93247 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.41 36.01 0.37 -0.31 16 2 C 0.15 2.06 8.14 -154.22 -1.25 0.81 16 3 N -0.26 -4.25 12.19 32.94 0.40 -3.85 16 4 N -0.30 -4.99 12.31 31.14 0.38 -4.61 16 5 C 0.19 2.74 7.92 -156.06 -1.24 1.51 16 6 C -0.09 -0.93 10.11 -39.40 -0.40 -1.33 16 7 C -0.08 -0.70 9.74 -39.51 -0.38 -1.08 16 8 C -0.10 -1.08 5.36 -104.92 -0.56 -1.64 16 9 C 0.11 1.13 5.59 -4.98 -0.03 1.11 16 10 N -0.67 -8.98 5.69 -107.99 -0.61 -9.59 16 11 C 0.08 1.21 2.59 -67.71 -0.18 1.04 16 12 H 0.07 1.10 7.80 -51.93 -0.40 0.70 16 13 C -0.18 -2.06 9.16 37.16 0.34 -1.72 16 14 C -0.10 -1.89 4.83 -26.73 -0.13 -2.01 16 15 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.09 1.12 10.52 -16.70 -0.18 0.94 16 25 N -0.39 -5.35 2.95 -59.73 -0.18 -5.53 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.04 0.38 7.38 -51.93 -0.38 -0.01 16 32 H 0.09 0.94 7.98 -51.93 -0.41 0.52 16 33 H 0.34 4.19 8.47 -39.29 -0.33 3.85 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 36 H 0.04 0.44 7.45 -51.93 -0.39 0.05 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.03 0.82 7.75 -51.93 -0.40 0.42 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -33.53 353.25 -9.66 -43.19 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.52 Total: -0.43 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -4.17 Total: -15.34 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.73 Total: -49.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.53 -9.66 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.034 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds