Wall clock time and date at job start Fri Apr 10 2020 19:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30801 * 126.24940 * 2 1 4 4 N 1.28678 * 110.29312 * 180.02562 * 3 2 1 5 5 C 1.32298 * 109.48118 * 359.97438 * 4 3 2 6 6 C 1.40827 * 133.46624 * 179.97438 * 5 4 3 7 7 C 1.36014 * 119.22606 * 180.27721 * 6 5 4 8 8 C 1.40547 * 119.74967 * 359.45011 * 7 6 5 9 9 C 1.50697 * 119.82062 * 180.31525 * 8 7 6 10 10 N 1.46896 * 109.47142 * 270.28118 * 9 8 7 11 11 C 1.46906 * 110.99886 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47455 * 34.99915 * 11 10 9 13 13 C 1.53006 * 109.46909 * 274.99726 * 11 10 9 14 14 C 1.52999 * 109.46963 * 155.00089 * 11 10 9 15 15 C 1.52995 * 109.47293 * 294.99567 * 14 11 10 16 16 C 1.50702 * 109.47636 * 180.02562 * 15 14 11 17 17 H 1.07999 * 119.99247 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00386 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47101 * 89.99774 * 20 18 16 22 22 H 1.48504 * 109.46988 * 209.99891 * 20 18 16 23 23 H 1.48496 * 109.46857 * 329.99821 * 20 18 16 24 24 C 1.34956 * 120.36329 * 0.59409 * 8 7 6 25 25 N 1.36066 * 126.24448 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47530 * 269.97658 * 1 2 3 27 27 H 1.09002 * 109.47093 * 29.98115 * 1 2 3 28 28 H 1.08999 * 109.47073 * 149.97127 * 1 2 3 29 29 H 1.08002 * 120.38322 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.12680 * 179.74189 * 7 6 5 31 31 H 1.09006 * 109.47296 * 30.28003 * 9 8 7 32 32 H 1.09001 * 109.47502 * 150.27997 * 9 8 7 33 33 H 1.00901 * 111.00455 * 56.04774 * 10 9 8 34 34 H 1.08998 * 109.47049 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.47031 * 300.00036 * 13 11 10 36 36 H 1.08996 * 109.47044 * 59.99848 * 13 11 10 37 37 H 1.08998 * 109.47550 * 54.99885 * 14 11 10 38 38 H 1.09006 * 109.47188 * 174.99358 * 14 11 10 39 39 H 1.09004 * 109.47359 * 300.00285 * 15 14 11 40 40 H 1.09006 * 109.47175 * 59.99782 * 15 14 11 41 41 H 0.97000 * 120.00138 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.74622 * 179.69320 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0548 0.0000 4 7 3.5176 0.7011 -0.0005 5 6 3.5990 -0.6194 -0.0004 6 6 4.6787 -1.5235 -0.0012 7 6 4.4258 -2.8599 -0.0064 8 6 3.0972 -3.3183 0.0008 9 6 2.8153 -4.7987 0.0022 10 7 2.7227 -5.2808 -1.3823 11 6 2.4473 -6.7233 -1.4201 12 1 1.7965 -6.9909 -0.5878 13 6 3.7628 -7.4968 -1.3081 14 6 1.7588 -7.0766 -2.7400 15 6 0.3872 -6.4012 -2.7965 16 6 -0.2913 -6.7496 -4.0963 17 1 0.2060 -7.3893 -4.8103 18 6 -1.5467 -6.2519 -4.3737 19 7 -2.1525 -5.4733 -3.5039 20 14 -2.3880 -6.6844 -5.9845 21 1 -3.1895 -7.9220 -5.8076 22 1 -3.2812 -5.5700 -6.3913 23 1 -1.3619 -6.9051 -7.0351 24 6 2.0725 -2.4401 0.0008 25 7 2.3115 -1.0974 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 5.6957 -1.1599 -0.0026 30 1 5.2428 -3.5662 -0.0114 31 1 3.6219 -5.3218 0.5159 32 1 1.8733 -4.9887 0.5168 33 1 3.5602 -5.0586 -1.8994 34 1 3.5585 -8.5671 -1.3366 35 1 4.4136 -7.2292 -2.1405 36 1 4.2533 -7.2450 -0.3679 37 1 2.3697 -6.7288 -3.5730 38 1 1.6346 -8.1575 -2.8071 39 1 -0.2237 -6.7490 -1.9635 40 1 0.5114 -5.3203 -2.7294 41 1 -3.0356 -5.1228 -3.6992 42 1 1.0555 -2.8033 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:03 Heat of formation + Delta-G solvation = 69.255721 kcal Electronic energy + Delta-G solvation = -22259.696310 eV Core-core repulsion = 19046.866394 eV Total energy + Delta-G solvation = -3212.829916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.59028 -39.82967 -38.21979 -35.53584 -35.22020 -33.96386 -32.36743 -31.61560 -30.05489 -28.41772 -27.03306 -26.35882 -24.73909 -23.44146 -23.00122 -22.29674 -21.33256 -19.02567 -18.34953 -18.14665 -17.73529 -16.86571 -16.46677 -16.39199 -15.87080 -15.34962 -15.15203 -14.67284 -14.48385 -14.23679 -14.04688 -13.79500 -13.62913 -13.44437 -13.34079 -13.16493 -13.07944 -12.85179 -12.81154 -12.69251 -12.34748 -12.25678 -12.03792 -11.74629 -11.64735 -11.47423 -11.17420 -10.93813 -10.49995 -10.44935 -9.11786 -9.03318 -8.12990 -6.21517 -0.35257 0.04054 1.26281 1.40345 1.41063 1.51422 1.57213 2.26856 2.44184 3.00995 3.20116 3.32948 3.47117 3.52563 3.70327 3.86166 3.86563 4.12015 4.27052 4.38652 4.41183 4.55104 4.56523 4.60276 4.75087 4.79295 4.85248 4.88780 5.00242 5.04420 5.05563 5.09809 5.18230 5.23408 5.37518 5.41135 5.51886 5.62359 5.83684 5.93467 6.06237 6.27534 6.38233 6.65017 6.98523 7.40540 7.46334 8.97789 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.004182 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.193293 B = 6693.474490 C = 8370.044484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.137 3.863 3 N -0.291 5.291 4 N -0.340 5.340 5 C 0.180 3.820 6 C -0.097 4.097 7 C -0.054 4.054 8 C -0.091 4.091 9 C 0.113 3.887 10 N -0.691 5.691 11 C 0.094 3.906 12 H 0.068 0.932 13 C -0.170 4.170 14 C -0.090 4.090 15 C 0.039 3.961 16 C -0.542 4.542 17 H 0.052 0.948 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.952 3.048 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.071 3.929 25 N -0.392 5.392 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.180 0.820 30 H 0.187 0.813 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.346 0.654 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.047 0.953 39 H -0.020 1.020 40 H 0.007 0.993 41 H 0.260 0.740 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.071 1.368 10.764 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 N -0.131 5.131 4 N -0.185 5.185 5 C -0.070 4.070 6 C -0.118 4.118 7 C -0.079 4.079 8 C -0.095 4.095 9 C -0.016 4.016 10 N -0.323 5.323 11 C -0.016 4.016 12 H 0.086 0.914 13 C -0.229 4.229 14 C -0.128 4.128 15 C 0.002 3.998 16 C -0.581 4.581 17 H 0.070 0.930 18 C -0.194 4.194 19 N -0.570 5.570 20 Si 0.778 3.222 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.052 4.052 25 N -0.072 5.072 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.198 0.802 30 H 0.204 0.796 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.066 0.934 39 H -0.001 1.001 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 12.584 3.284 10.719 16.853 hybrid contribution -0.539 -1.416 -0.721 1.678 sum 12.044 1.868 9.998 15.764 Atomic orbital electron populations 1.20399 0.80726 1.05628 1.05507 1.25539 0.98336 0.80679 1.08059 1.74058 0.97076 1.24992 1.16969 1.74769 1.11403 1.07758 1.24610 1.22919 0.86346 0.92666 1.05053 1.20595 0.97282 0.90985 1.02966 1.21538 0.96812 0.95155 0.94349 1.19715 0.92390 0.96362 1.01063 1.20784 1.02666 0.87584 0.90547 1.60430 1.43757 1.15315 1.12752 1.21498 0.96173 0.86276 0.97626 0.91360 1.22405 0.97046 1.01087 1.02374 1.21474 0.96491 0.98518 0.96366 1.18826 0.91760 0.95665 0.93546 1.21843 1.01912 1.29447 1.04869 0.93015 1.25833 0.98319 0.95184 1.00095 1.70082 1.15003 1.34851 1.37053 0.85642 0.78505 0.77868 0.80206 1.19875 1.21003 1.19140 1.21859 1.03033 0.78690 1.01645 1.43814 1.08606 1.07599 1.47157 0.87586 0.87747 0.89514 0.80245 0.79597 0.90484 0.90295 0.83534 0.92069 0.92126 0.90963 0.93786 0.93416 1.00120 0.97504 0.93117 0.80723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 10.41 71.24 0.74 -0.59 16 2 C 0.14 4.02 8.14 137.71 1.12 5.14 16 3 N -0.29 -10.13 12.19 -49.68 -0.61 -10.73 16 4 N -0.34 -11.84 12.31 -55.40 -0.68 -12.52 16 5 C 0.18 5.19 7.92 134.07 1.06 6.25 16 6 C -0.10 -1.89 10.11 22.39 0.23 -1.66 16 7 C -0.05 -0.81 9.74 22.32 0.22 -0.59 16 8 C -0.09 -1.74 5.36 -20.06 -0.11 -1.85 16 9 C 0.11 2.06 5.59 85.56 0.48 2.54 16 10 N -0.69 -17.08 5.69 -495.57 -2.82 -19.90 16 11 C 0.09 2.51 2.59 44.92 0.12 2.63 16 12 H 0.07 1.92 7.80 -2.39 -0.02 1.90 16 13 C -0.17 -3.21 9.16 71.98 0.66 -2.55 16 14 C -0.09 -3.38 4.83 30.59 0.15 -3.24 16 15 C 0.04 1.97 4.86 29.85 0.15 2.12 16 16 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 18 C 0.00 0.18 5.46 84.65 0.46 0.65 16 19 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 20 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.07 1.68 10.52 83.23 0.88 2.56 16 25 N -0.39 -10.99 2.95 -342.88 -1.01 -12.00 16 26 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 30 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.08 0.94 7.38 -2.38 -0.02 0.93 16 32 H 0.08 1.58 7.98 -2.39 -0.02 1.56 16 33 H 0.35 7.52 8.47 -89.69 -0.76 6.76 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 36 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 39 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 40 H 0.01 0.36 7.75 -2.38 -0.02 0.34 16 41 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -75.24 353.25 3.82 -71.42 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.25 Total: 11.79 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 6.38 Total: -18.91 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.83 Total: -110.51 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.24 3.82 -71.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.679 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds