Wall clock time and date at job start Fri Apr 10 2020 19:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30801 * 126.24940 * 2 1 4 4 N 1.28678 * 110.29312 * 180.02562 * 3 2 1 5 5 C 1.32298 * 109.48118 * 359.97438 * 4 3 2 6 6 C 1.40827 * 133.46624 * 179.97438 * 5 4 3 7 7 C 1.36014 * 119.22606 * 180.27721 * 6 5 4 8 8 C 1.40546 * 119.74958 * 359.49236 * 7 6 5 9 9 C 1.50705 * 119.81829 * 180.27146 * 8 7 6 10 10 N 1.46893 * 109.47226 * 270.23390 * 9 8 7 11 11 C 1.46903 * 111.00067 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47001 * 325.00244 * 11 10 9 13 13 C 1.53002 * 109.46984 * 85.00348 * 11 10 9 14 14 C 1.52996 * 109.46920 * 205.00346 * 11 10 9 15 15 C 1.53001 * 109.47467 * 65.00510 * 14 11 10 16 16 C 1.50694 * 109.47220 * 179.97438 * 15 14 11 17 17 H 1.08004 * 120.00436 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99851 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99756 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47276 * 60.00490 * 20 18 16 22 22 H 1.48505 * 109.46899 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47248 * 299.99776 * 20 18 16 24 24 C 1.34955 * 120.36428 * 0.50735 * 8 7 6 25 25 N 1.36066 * 126.24448 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47530 * 269.97658 * 1 2 3 27 27 H 1.09002 * 109.47093 * 29.98115 * 1 2 3 28 28 H 1.08999 * 109.47073 * 149.97127 * 1 2 3 29 29 H 1.08002 * 120.38322 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.12680 * 179.74189 * 7 6 5 31 31 H 1.08998 * 109.47117 * 30.23828 * 9 8 7 32 32 H 1.09007 * 109.46792 * 150.23452 * 9 8 7 33 33 H 1.00900 * 111.00275 * 303.95857 * 10 9 8 34 34 H 1.08999 * 109.47175 * 180.02562 * 13 11 10 35 35 H 1.08993 * 109.47274 * 300.00182 * 13 11 10 36 36 H 1.08999 * 109.46845 * 59.99996 * 13 11 10 37 37 H 1.09003 * 109.46992 * 184.99974 * 14 11 10 38 38 H 1.09000 * 109.47664 * 304.99649 * 14 11 10 39 39 H 1.09003 * 109.46577 * 299.99718 * 15 14 11 40 40 H 1.08990 * 109.47048 * 59.99404 * 15 14 11 41 41 H 0.97001 * 120.00199 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.74656 * 179.73627 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0548 0.0000 4 7 3.5176 0.7011 -0.0005 5 6 3.5990 -0.6194 -0.0004 6 6 4.6787 -1.5235 -0.0012 7 6 4.4258 -2.8599 -0.0064 8 6 3.0972 -3.3183 -0.0001 9 6 2.8153 -4.7987 0.0003 10 7 2.7223 -5.2799 -1.3845 11 6 2.4482 -6.7226 -1.4233 12 1 2.9562 -7.2114 -0.5920 13 6 0.9407 -6.9584 -1.3096 14 6 2.9570 -7.3030 -2.7443 15 6 4.4809 -7.1790 -2.8026 16 6 4.9821 -7.7513 -4.1034 17 1 4.2836 -8.1620 -4.8175 18 6 6.3323 -7.7496 -4.3825 19 7 7.1828 -7.2491 -3.5133 20 14 6.9537 -8.4596 -5.9947 21 1 6.3521 -7.7133 -7.1289 22 1 8.4327 -8.3392 -6.0513 23 1 6.5704 -9.8914 -6.0854 24 6 2.0725 -2.4401 0.0008 25 7 2.3115 -1.0974 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 5.6957 -1.1599 -0.0026 30 1 5.2428 -3.5662 -0.0114 31 1 3.6220 -5.3221 0.5134 32 1 1.8735 -4.9891 0.5151 33 1 2.0246 -4.7649 -1.9002 34 1 0.7373 -8.0289 -1.3380 35 1 0.5782 -6.5449 -0.3686 36 1 0.4328 -6.4696 -2.1410 37 1 2.6752 -8.3538 -2.8119 38 1 2.5157 -6.7543 -3.5763 39 1 4.7627 -6.1282 -2.7349 40 1 4.9221 -7.7277 -1.9706 41 1 8.1328 -7.2482 -3.7095 42 1 1.0555 -2.8033 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:18 Heat of formation + Delta-G solvation = 90.119141 kcal Electronic energy + Delta-G solvation = -22121.867223 eV Core-core repulsion = 18909.942013 eV Total energy + Delta-G solvation = -3211.925210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62462 -38.91480 -37.09786 -34.48913 -33.64367 -32.56637 -31.44283 -30.19899 -28.88783 -27.56320 -25.74522 -24.96843 -23.73599 -22.41578 -21.48540 -21.38567 -19.94472 -18.12084 -17.24124 -16.77102 -16.18382 -15.66749 -15.41355 -15.11937 -14.79338 -14.40068 -14.10050 -13.56225 -13.50881 -13.05432 -13.02852 -12.68553 -12.50918 -12.39685 -12.27503 -12.05219 -11.74327 -11.67902 -11.41168 -11.23380 -11.12579 -10.85493 -10.63378 -10.50588 -10.33755 -9.72570 -9.51227 -9.28745 -8.97717 -8.29599 -8.18544 -8.03896 -5.93059 -3.94084 0.49183 0.97398 2.14000 2.55019 3.21028 3.35814 3.40511 3.42692 3.86065 4.17581 4.23949 4.45437 4.50611 4.52720 4.60906 4.65747 5.04623 5.09100 5.13877 5.20703 5.37945 5.39825 5.42755 5.43455 5.51875 5.58882 5.66132 5.86425 5.91647 5.94420 6.09917 6.14233 6.25746 6.28022 6.55094 6.71754 6.78560 7.17904 7.30405 7.56817 7.78906 8.01404 8.16339 8.43579 8.52538 9.14232 9.68863 11.17948 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003443 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.394742 B = 8131.285856 C = 9065.573364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.130 3.870 3 N -0.253 5.253 4 N -0.296 5.296 5 C 0.198 3.802 6 C -0.086 4.086 7 C -0.057 4.057 8 C -0.079 4.079 9 C 0.106 3.894 10 N -0.666 5.666 11 C 0.084 3.916 12 H 0.075 0.925 13 C -0.182 4.182 14 C -0.099 4.099 15 C 0.030 3.970 16 C -0.521 4.521 17 H 0.050 0.950 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.055 3.945 25 N -0.385 5.385 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.336 0.664 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.032 0.968 40 H 0.007 0.993 41 H 0.259 0.741 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 8.021 10.812 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.132 4.132 3 N -0.094 5.094 4 N -0.142 5.142 5 C -0.051 4.051 6 C -0.107 4.107 7 C -0.082 4.082 8 C -0.084 4.084 9 C -0.024 4.024 10 N -0.296 5.296 11 C -0.025 4.025 12 H 0.094 0.906 13 C -0.241 4.241 14 C -0.137 4.137 15 C -0.007 4.007 16 C -0.559 4.559 17 H 0.068 0.932 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.068 4.068 25 N -0.065 5.065 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.900 9.604 10.767 19.354 hybrid contribution -0.868 -1.763 -0.735 2.098 sum -13.768 7.840 10.032 18.753 Atomic orbital electron populations 1.20159 0.83320 1.04587 1.03867 1.24797 0.96859 0.81081 1.10424 1.74161 0.96730 1.23590 1.14923 1.74937 1.10743 1.06177 1.22361 1.22376 0.85017 0.92673 1.05078 1.20320 0.97311 0.90945 1.02141 1.21273 0.96954 0.95202 0.94783 1.19643 0.92445 0.96255 1.00008 1.20846 1.01131 0.88419 0.91999 1.60552 1.54137 1.04369 1.10587 1.21779 0.92564 0.87081 1.01064 0.90650 1.22547 0.98494 1.02451 1.00566 1.21639 1.00803 0.97959 0.93280 1.18986 0.87886 0.98016 0.95791 1.21300 0.91922 1.39163 1.03542 0.93202 1.24979 0.97131 0.95642 0.96556 1.69945 1.02290 1.46067 1.35109 0.86753 0.77636 0.79591 0.84543 1.20369 1.21357 1.20420 1.21363 1.01229 0.79644 1.04613 1.43594 1.08787 1.06839 1.47243 0.89786 0.88539 0.90499 0.82380 0.82640 0.88851 0.94386 0.84618 0.92007 0.93744 0.92742 0.93358 0.93469 0.94948 0.97468 0.93150 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.41 36.01 0.37 -0.05 16 2 C 0.13 1.59 8.14 -154.22 -1.25 0.34 16 3 N -0.25 -3.92 12.19 32.94 0.40 -3.52 16 4 N -0.30 -4.89 12.31 31.14 0.38 -4.51 16 5 C 0.20 2.84 7.92 -156.06 -1.24 1.60 16 6 C -0.09 -1.04 10.11 -39.40 -0.40 -1.44 16 7 C -0.06 -0.66 9.74 -39.51 -0.38 -1.04 16 8 C -0.08 -0.84 5.36 -104.92 -0.56 -1.40 16 9 C 0.11 1.10 5.59 -4.98 -0.03 1.07 16 10 N -0.67 -8.90 5.69 -107.99 -0.61 -9.51 16 11 C 0.08 1.21 2.59 -67.71 -0.18 1.03 16 12 H 0.08 1.11 7.80 -51.93 -0.40 0.71 16 13 C -0.18 -2.03 9.16 37.16 0.34 -1.69 16 14 C -0.10 -1.88 4.83 -26.73 -0.13 -2.01 16 15 C 0.03 0.75 4.86 -27.89 -0.14 0.62 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 17 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.05 0.54 10.52 -16.70 -0.18 0.36 16 25 N -0.39 -4.75 2.95 -59.73 -0.18 -4.93 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.04 0.32 7.37 -51.93 -0.38 -0.06 16 33 H 0.34 4.10 8.47 -39.29 -0.33 3.77 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.42 7.45 -51.93 -0.39 0.03 16 36 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.86 7.75 -51.93 -0.40 0.46 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -33.94 353.25 -9.66 -43.60 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.52 Total: -1.22 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -4.17 Total: -15.98 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.73 Total: -48.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.94 -9.66 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.718 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds