Wall clock time and date at job start Fri Apr 10 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30801 * 126.24940 * 2 1 4 4 N 1.28678 * 110.29312 * 180.02562 * 3 2 1 5 5 C 1.32298 * 109.48118 * 359.97438 * 4 3 2 6 6 C 1.40827 * 133.46624 * 179.97438 * 5 4 3 7 7 C 1.36014 * 119.22606 * 180.27721 * 6 5 4 8 8 C 1.40546 * 119.74958 * 359.49236 * 7 6 5 9 9 C 1.50705 * 119.81829 * 180.27146 * 8 7 6 10 10 N 1.46893 * 109.47226 * 270.23390 * 9 8 7 11 11 C 1.46903 * 111.00067 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47001 * 325.00244 * 11 10 9 13 13 C 1.53002 * 109.46984 * 85.00348 * 11 10 9 14 14 C 1.52996 * 109.46920 * 205.00346 * 11 10 9 15 15 C 1.53001 * 109.47467 * 65.00510 * 14 11 10 16 16 C 1.50694 * 109.47220 * 179.97438 * 15 14 11 17 17 H 1.08004 * 120.00436 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99851 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99756 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47276 * 60.00490 * 20 18 16 22 22 H 1.48505 * 109.46899 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47248 * 299.99776 * 20 18 16 24 24 C 1.34955 * 120.36428 * 0.50735 * 8 7 6 25 25 N 1.36066 * 126.24448 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.47530 * 269.97658 * 1 2 3 27 27 H 1.09002 * 109.47093 * 29.98115 * 1 2 3 28 28 H 1.08999 * 109.47073 * 149.97127 * 1 2 3 29 29 H 1.08002 * 120.38322 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.12680 * 179.74189 * 7 6 5 31 31 H 1.08998 * 109.47117 * 30.23828 * 9 8 7 32 32 H 1.09007 * 109.46792 * 150.23452 * 9 8 7 33 33 H 1.00900 * 111.00275 * 303.95857 * 10 9 8 34 34 H 1.08999 * 109.47175 * 180.02562 * 13 11 10 35 35 H 1.08993 * 109.47274 * 300.00182 * 13 11 10 36 36 H 1.08999 * 109.46845 * 59.99996 * 13 11 10 37 37 H 1.09003 * 109.46992 * 184.99974 * 14 11 10 38 38 H 1.09000 * 109.47664 * 304.99649 * 14 11 10 39 39 H 1.09003 * 109.46577 * 299.99718 * 15 14 11 40 40 H 1.08990 * 109.47048 * 59.99404 * 15 14 11 41 41 H 0.97001 * 120.00199 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.74656 * 179.73627 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0548 0.0000 4 7 3.5176 0.7011 -0.0005 5 6 3.5990 -0.6194 -0.0004 6 6 4.6787 -1.5235 -0.0012 7 6 4.4258 -2.8599 -0.0064 8 6 3.0972 -3.3183 -0.0001 9 6 2.8153 -4.7987 0.0003 10 7 2.7223 -5.2799 -1.3845 11 6 2.4482 -6.7226 -1.4233 12 1 2.9562 -7.2114 -0.5920 13 6 0.9407 -6.9584 -1.3096 14 6 2.9570 -7.3030 -2.7443 15 6 4.4809 -7.1790 -2.8026 16 6 4.9821 -7.7513 -4.1034 17 1 4.2836 -8.1620 -4.8175 18 6 6.3323 -7.7496 -4.3825 19 7 7.1828 -7.2491 -3.5133 20 14 6.9537 -8.4596 -5.9947 21 1 6.3521 -7.7133 -7.1289 22 1 8.4327 -8.3392 -6.0513 23 1 6.5704 -9.8914 -6.0854 24 6 2.0725 -2.4401 0.0008 25 7 2.3115 -1.0974 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 5.6957 -1.1599 -0.0026 30 1 5.2428 -3.5662 -0.0114 31 1 3.6220 -5.3221 0.5134 32 1 1.8735 -4.9891 0.5151 33 1 2.0246 -4.7649 -1.9002 34 1 0.7373 -8.0289 -1.3380 35 1 0.5782 -6.5449 -0.3686 36 1 0.4328 -6.4696 -2.1410 37 1 2.6752 -8.3538 -2.8119 38 1 2.5157 -6.7543 -3.5763 39 1 4.7627 -6.1282 -2.7349 40 1 4.9221 -7.7277 -1.9706 41 1 8.1328 -7.2482 -3.7095 42 1 1.0555 -2.8033 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:13 Heat of formation + Delta-G solvation = 69.951850 kcal Electronic energy + Delta-G solvation = -22122.741742 eV Core-core repulsion = 18909.942013 eV Total energy + Delta-G solvation = -3212.799729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 9.97 seconds Orbital eigenvalues (eV) -44.58388 -39.84035 -38.22116 -35.51441 -35.25141 -33.96702 -32.37800 -31.57590 -30.05693 -28.37986 -27.01058 -26.40902 -24.71403 -23.44791 -22.95282 -22.33984 -21.32512 -19.06552 -18.33617 -18.11010 -17.72563 -16.71108 -16.45642 -16.39712 -15.95021 -15.70546 -14.98501 -14.63592 -14.45509 -14.23318 -14.02434 -13.76058 -13.56638 -13.39723 -13.33426 -13.18691 -13.07072 -12.84393 -12.79349 -12.56636 -12.42800 -12.30225 -12.03544 -11.74584 -11.61496 -11.47109 -11.16724 -10.93517 -10.48357 -10.43629 -9.16354 -8.99483 -8.11515 -6.20524 -0.37350 0.03805 1.26517 1.41061 1.43132 1.50690 1.60291 2.25849 2.45069 3.00020 3.21197 3.30647 3.47810 3.53796 3.70295 3.80699 3.83944 4.13950 4.26956 4.41372 4.45743 4.50457 4.57743 4.64432 4.75701 4.82465 4.85291 4.90898 4.98400 5.05152 5.06885 5.10862 5.18596 5.25826 5.36428 5.39183 5.52374 5.62944 5.86849 5.94479 6.07899 6.27633 6.39006 6.64475 6.99849 7.43192 7.47191 8.98981 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.003443 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.394742 B = 8131.285856 C = 9065.573364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.143 3.857 3 N -0.297 5.297 4 N -0.343 5.343 5 C 0.184 3.816 6 C -0.106 4.106 7 C -0.054 4.054 8 C -0.091 4.091 9 C 0.114 3.886 10 N -0.690 5.690 11 C 0.093 3.907 12 H 0.068 0.932 13 C -0.170 4.170 14 C -0.090 4.090 15 C 0.039 3.961 16 C -0.544 4.544 17 H 0.052 0.948 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.954 3.046 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.072 3.928 25 N -0.391 5.391 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.344 0.656 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.007 0.993 40 H -0.020 1.020 41 H 0.260 0.740 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.940 6.897 10.737 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 N -0.136 5.136 4 N -0.188 5.188 5 C -0.066 4.066 6 C -0.127 4.127 7 C -0.078 4.078 8 C -0.095 4.095 9 C -0.015 4.015 10 N -0.322 5.322 11 C -0.016 4.016 12 H 0.086 0.914 13 C -0.229 4.229 14 C -0.128 4.128 15 C 0.002 3.998 16 C -0.582 4.582 17 H 0.070 0.930 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.193 1.193 24 C -0.050 4.050 25 N -0.071 5.071 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.025 0.975 40 H -0.002 1.002 41 H 0.069 0.931 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.750 8.497 10.694 20.848 hybrid contribution -0.001 -1.443 -0.700 1.604 sum -15.752 7.054 9.994 19.944 Atomic orbital electron populations 1.20472 0.79455 1.06252 1.05715 1.25775 0.98618 0.80203 1.07450 1.74056 0.96909 1.25515 1.17138 1.74816 1.11778 1.07649 1.24598 1.22597 0.86468 0.92466 1.05109 1.20422 0.97458 0.91109 1.03725 1.21409 0.97941 0.94803 0.93687 1.19677 0.92110 0.96685 1.01043 1.20783 1.02514 0.87683 0.90482 1.60372 1.55103 1.03919 1.12818 1.21501 0.94893 0.87550 0.97651 0.91351 1.22403 0.95344 1.02791 1.02348 1.21472 0.96515 0.98476 0.96358 1.18822 0.91961 0.95531 0.93509 1.21819 0.92421 1.39135 1.04830 0.92962 1.25865 0.97517 0.96042 1.00175 1.70078 1.02542 1.47247 1.37101 0.85681 0.77018 0.79227 0.80184 1.19573 1.21040 1.19307 1.21986 1.02978 0.78279 1.01790 1.43802 1.08051 1.07854 1.47349 0.87660 0.87932 0.87743 0.81816 0.82800 0.89869 0.90863 0.83713 0.92039 0.90938 0.92104 0.93419 0.93767 0.97454 1.00191 0.93117 0.77464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.41 71.24 0.74 0.11 16 2 C 0.14 3.26 8.14 137.71 1.12 4.39 16 3 N -0.30 -9.32 12.19 -49.68 -0.61 -9.93 16 4 N -0.34 -11.82 12.31 -55.40 -0.68 -12.50 16 5 C 0.18 5.37 7.92 134.07 1.06 6.43 16 6 C -0.11 -2.68 10.11 22.39 0.23 -2.45 16 7 C -0.05 -1.23 9.74 22.32 0.22 -1.01 16 8 C -0.09 -1.75 5.36 -20.05 -0.11 -1.86 16 9 C 0.11 2.08 5.59 85.56 0.48 2.56 16 10 N -0.69 -17.06 5.69 -495.57 -2.82 -19.88 16 11 C 0.09 2.50 2.59 44.91 0.12 2.62 16 12 H 0.07 1.93 7.80 -2.39 -0.02 1.91 16 13 C -0.17 -3.13 9.16 71.98 0.66 -2.47 16 14 C -0.09 -3.38 4.83 30.59 0.15 -3.23 16 15 C 0.04 1.98 4.86 29.85 0.15 2.12 16 16 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 20 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.07 1.19 10.52 83.23 0.88 2.06 16 25 N -0.39 -9.04 2.95 -342.88 -1.01 -10.05 16 26 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 31 H 0.08 1.70 8.00 -2.39 -0.02 1.68 16 32 H 0.07 0.86 7.37 -2.38 -0.02 0.84 16 33 H 0.34 7.39 8.47 -89.69 -0.76 6.63 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 0.97 7.45 -2.39 -0.02 0.95 16 36 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.01 0.39 7.75 -2.39 -0.02 0.37 16 40 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 42 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -77.07 353.25 3.82 -73.25 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.25 Total: 9.48 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 6.38 Total: -20.79 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.83 Total: -108.49 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -77.07 3.82 -73.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.206 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.97 seconds