Wall clock time and date at job start Fri Apr 10 2020 19:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38674 * 120.41419 * 2 1 4 4 C 1.38635 * 118.41666 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.16086 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.61973 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47065 * 354.74711 * 6 5 4 8 8 N 1.46899 * 109.47238 * 114.74021 * 6 5 4 9 9 C 1.46899 * 111.00086 * 206.31942 * 8 6 5 10 10 H 1.09003 * 109.47496 * 325.00218 * 9 8 6 11 11 C 1.52995 * 109.47188 * 85.00260 * 9 8 6 12 12 C 1.53004 * 109.47100 * 205.00578 * 9 8 6 13 13 C 1.52990 * 109.47492 * 65.00062 * 12 9 8 14 14 C 1.50703 * 109.47198 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99963 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00251 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47044 * 89.99887 * 18 16 14 20 20 H 1.48498 * 109.47374 * 209.99903 * 18 16 14 21 21 H 1.48503 * 109.47130 * 330.00031 * 18 16 14 22 22 C 1.52996 * 109.47245 * 234.74337 * 6 5 4 23 23 C 1.53003 * 117.49720 * 128.74575 * 22 6 5 24 24 C 1.53005 * 117.49965 * 60.08797 * 22 6 5 25 25 N 1.31856 * 120.76266 * 0.25160 * 5 4 3 26 26 C 1.31889 * 121.72750 * 359.48145 * 25 5 4 27 27 H 1.09002 * 109.47539 * 89.99605 * 1 2 3 28 28 H 1.09000 * 109.47005 * 209.99806 * 1 2 3 29 29 H 1.09008 * 109.46822 * 329.99589 * 1 2 3 30 30 H 1.07994 * 120.79744 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.41836 * 180.02562 * 4 3 2 32 32 H 1.00895 * 111.00385 * 330.27582 * 8 6 5 33 33 H 1.08997 * 109.47440 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.47666 * 300.00049 * 11 9 8 35 35 H 1.09003 * 109.47153 * 60.00122 * 11 9 8 36 36 H 1.09000 * 109.46453 * 304.99596 * 12 9 8 37 37 H 1.08999 * 109.47181 * 185.00195 * 12 9 8 38 38 H 1.09000 * 109.47372 * 59.99537 * 13 12 9 39 39 H 1.09002 * 109.46770 * 299.99775 * 13 12 9 40 40 H 0.97000 * 120.00523 * 180.02562 * 17 16 14 41 41 H 1.08992 * 115.55171 * 274.41616 * 22 6 5 42 42 H 1.09004 * 117.50176 * 359.97438 * 23 22 6 43 43 H 1.09000 * 117.50206 * 145.02267 * 23 22 6 44 44 H 1.08999 * 117.49846 * 214.98196 * 24 22 6 45 45 H 1.09003 * 117.49557 * 359.97362 * 24 22 6 46 46 H 1.08001 * 119.61850 * 180.26594 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 1 6.1379 0.8601 -0.0967 8 7 6.1965 -0.7475 1.2544 9 6 7.5521 -0.2893 1.5867 10 1 8.1269 -0.1598 0.6697 11 6 7.4714 1.0451 2.3306 12 6 8.2380 -1.3284 2.4760 13 6 8.4310 -2.6259 1.6887 14 6 9.1060 -3.6495 2.5649 15 1 9.3712 -3.3994 3.5815 16 6 9.3850 -4.9052 2.0686 17 7 9.0616 -5.2100 0.8308 18 14 10.2223 -6.1738 3.1544 19 1 9.1931 -6.9610 3.8801 20 1 11.0392 -7.0843 2.3124 21 1 11.1003 -5.4847 4.1341 22 6 6.2041 -1.0000 -1.1814 23 6 7.2664 -0.4012 -2.1056 24 6 5.8200 -0.5366 -2.5881 25 7 3.5254 -1.1995 -0.0071 26 6 2.2066 -1.1916 -0.0016 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6889 2.1424 0.0004 31 1 4.1734 2.0593 -0.0001 32 1 5.5542 -0.5528 2.0078 33 1 8.4772 1.3849 2.5776 34 1 6.9828 1.7854 1.6972 35 1 6.8966 0.9157 3.2477 36 1 7.6183 -1.5232 3.3513 37 1 9.2088 -0.9493 2.7953 38 1 9.0506 -2.4310 0.8133 39 1 7.4601 -3.0050 1.3695 40 1 9.2575 -6.0936 0.4818 41 1 6.2436 -2.0738 -0.9986 42 1 7.6279 0.6007 -1.8742 43 1 8.0044 -1.0812 -2.5311 44 1 5.6070 -1.3056 -3.3307 45 1 5.2299 0.3759 -2.6737 46 1 1.6671 -2.1273 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:30 Heat of formation + Delta-G solvation = 41.196549 kcal Electronic energy + Delta-G solvation = -23008.887757 eV Core-core repulsion = 19898.381448 eV Total energy + Delta-G solvation = -3110.506309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48139 -38.03636 -35.97201 -33.91362 -32.97518 -32.16523 -30.92219 -29.08639 -27.42895 -25.17095 -24.57222 -23.64443 -22.21485 -21.72417 -21.29506 -19.83634 -19.58712 -16.74893 -16.38270 -16.00404 -15.79161 -15.24841 -14.54600 -14.41557 -14.31584 -14.16619 -13.96577 -13.18271 -13.01157 -12.87427 -12.78363 -12.66400 -12.41068 -12.24666 -11.93582 -11.71514 -11.33484 -11.25234 -11.12196 -11.02010 -10.78539 -10.38848 -10.22631 -9.90311 -9.84499 -9.75415 -9.53209 -9.20730 -9.11611 -8.84867 -8.78722 -8.14374 -7.79804 -5.79829 -3.80422 1.02743 1.26520 3.42540 3.48276 3.51461 3.73393 4.04184 4.34944 4.38934 4.61037 4.66727 4.72240 4.88763 4.92841 5.13373 5.24032 5.28132 5.33260 5.39199 5.42300 5.48491 5.55454 5.56327 5.63376 5.70393 5.74484 5.76720 5.85986 5.93875 6.02601 6.13938 6.16499 6.22680 6.31687 6.40215 6.48838 6.64276 6.74207 6.85988 6.98125 7.41137 7.58321 7.87157 7.94484 8.12438 8.19128 8.36125 8.67223 9.28936 9.81448 11.31045 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.003870 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.509524 B = 7234.333665 C = 7484.275116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.147 4.147 3 C -0.079 4.079 4 C -0.169 4.169 5 C 0.132 3.868 6 C 0.173 3.827 7 H 0.051 0.949 8 N -0.650 5.650 9 C 0.083 3.917 10 H 0.076 0.924 11 C -0.181 4.181 12 C -0.096 4.096 13 C 0.031 3.969 14 C -0.517 4.517 15 H 0.049 0.951 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.885 3.115 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.114 4.114 23 C -0.180 4.180 24 C -0.185 4.185 25 N -0.442 5.442 26 C 0.101 3.899 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.335 0.665 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.007 0.993 39 H 0.035 0.965 40 H 0.257 0.743 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 15.924 -4.342 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C -0.105 4.105 4 C -0.189 4.189 5 C -0.006 4.006 6 C 0.063 3.937 7 H 0.069 0.931 8 N -0.281 5.281 9 C -0.026 4.026 10 H 0.094 0.906 11 C -0.241 4.241 12 C -0.134 4.134 13 C -0.006 4.006 14 C -0.556 4.556 15 H 0.067 0.933 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.133 4.133 23 C -0.217 4.217 24 C -0.222 4.222 25 N -0.150 5.150 26 C -0.057 4.057 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.292 14.393 -4.764 20.836 hybrid contribution -0.169 1.012 0.833 1.322 sum -14.462 15.405 -3.931 21.492 Atomic orbital electron populations 1.20695 0.90470 1.02957 1.02383 1.20942 0.97423 0.94425 1.02170 1.21377 0.93840 0.98007 0.97318 1.21978 0.95203 0.98899 1.02854 1.21287 0.96285 0.88182 0.94862 1.19938 0.86682 0.95255 0.91827 0.93094 1.60472 1.03073 1.61335 1.03196 1.21824 0.89554 0.92333 0.98886 0.90594 1.22567 1.02016 0.98916 1.00555 1.21606 0.97185 0.96895 0.97762 1.18975 0.97560 0.89732 0.94288 1.21362 1.38200 0.97484 0.98538 0.93267 1.24979 0.96180 0.98292 0.94909 1.69981 1.48069 1.20728 1.14505 0.86722 0.79572 0.81800 0.80604 1.20854 1.21428 1.20119 1.22209 1.01330 1.01363 0.88437 1.23006 0.92083 1.01877 1.04746 1.22860 0.98294 1.02600 0.98466 1.67598 1.07363 1.30702 1.09330 1.22787 0.90017 0.97353 0.95551 0.91106 0.91167 0.91612 0.85242 0.85316 0.84612 0.92184 0.93946 0.92849 0.93627 0.93644 0.97464 0.94687 0.93359 0.85768 0.89555 0.88558 0.89140 0.89994 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.04 36.00 0.36 -0.38 16 2 C -0.15 -1.48 5.90 -104.48 -0.62 -2.10 16 3 C -0.08 -0.78 9.86 -39.27 -0.39 -1.17 16 4 C -0.17 -1.90 9.71 -39.44 -0.38 -2.29 16 5 C 0.13 1.85 5.06 -82.59 -0.42 1.43 16 6 C 0.17 2.58 2.36 -68.87 -0.16 2.42 16 7 H 0.05 0.69 6.60 -51.93 -0.34 0.35 16 8 N -0.65 -11.08 5.51 -100.96 -0.56 -11.63 16 9 C 0.08 1.43 2.40 -67.71 -0.16 1.27 16 10 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 11 C -0.18 -2.49 9.15 37.15 0.34 -2.15 16 12 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 16 13 C 0.03 0.84 4.86 -27.89 -0.14 0.71 16 14 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 18 Si 0.88 22.50 29.54 -169.99 -5.02 17.48 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.11 -1.87 4.98 -90.62 -0.45 -2.32 16 23 C -0.18 -2.62 10.18 -26.69 -0.27 -2.89 16 24 C -0.18 -2.55 9.87 -26.69 -0.26 -2.82 16 25 N -0.44 -6.78 10.01 -9.47 -0.09 -6.88 16 26 C 0.10 1.25 10.86 -17.55 -0.19 1.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.06 0.38 8.10 -51.92 -0.42 -0.04 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 32 H 0.34 5.49 8.07 -39.29 -0.32 5.17 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.51 7.44 -51.93 -0.39 0.12 16 35 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.03 1.02 7.75 -51.93 -0.40 0.61 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 2.52 8.14 -51.93 -0.42 2.10 16 42 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 43 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -32.50 377.62 -10.66 -43.16 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.14 Total: 4.66 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -3.28 Total: -25.39 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.09 Total: -45.61 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.50 -10.66 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.359 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds