Wall clock time and date at job start Fri Apr 10 2020 19:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38674 * 120.41419 * 2 1 4 4 C 1.38635 * 118.41666 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.16086 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.61973 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47065 * 354.74711 * 6 5 4 8 8 N 1.46899 * 109.47238 * 114.74021 * 6 5 4 9 9 C 1.46899 * 111.00086 * 206.31942 * 8 6 5 10 10 H 1.09003 * 109.47496 * 325.00218 * 9 8 6 11 11 C 1.52995 * 109.47188 * 85.00260 * 9 8 6 12 12 C 1.53004 * 109.47100 * 205.00578 * 9 8 6 13 13 C 1.52990 * 109.47492 * 65.00062 * 12 9 8 14 14 C 1.50703 * 109.47198 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99963 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00251 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47044 * 89.99887 * 18 16 14 20 20 H 1.48498 * 109.47374 * 209.99903 * 18 16 14 21 21 H 1.48503 * 109.47130 * 330.00031 * 18 16 14 22 22 C 1.52996 * 109.47245 * 234.74337 * 6 5 4 23 23 C 1.53003 * 117.49720 * 128.74575 * 22 6 5 24 24 C 1.53005 * 117.49965 * 60.08797 * 22 6 5 25 25 N 1.31856 * 120.76266 * 0.25160 * 5 4 3 26 26 C 1.31889 * 121.72750 * 359.48145 * 25 5 4 27 27 H 1.09002 * 109.47539 * 89.99605 * 1 2 3 28 28 H 1.09000 * 109.47005 * 209.99806 * 1 2 3 29 29 H 1.09008 * 109.46822 * 329.99589 * 1 2 3 30 30 H 1.07994 * 120.79744 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.41836 * 180.02562 * 4 3 2 32 32 H 1.00895 * 111.00385 * 330.27582 * 8 6 5 33 33 H 1.08997 * 109.47440 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.47666 * 300.00049 * 11 9 8 35 35 H 1.09003 * 109.47153 * 60.00122 * 11 9 8 36 36 H 1.09000 * 109.46453 * 304.99596 * 12 9 8 37 37 H 1.08999 * 109.47181 * 185.00195 * 12 9 8 38 38 H 1.09000 * 109.47372 * 59.99537 * 13 12 9 39 39 H 1.09002 * 109.46770 * 299.99775 * 13 12 9 40 40 H 0.97000 * 120.00523 * 180.02562 * 17 16 14 41 41 H 1.08992 * 115.55171 * 274.41616 * 22 6 5 42 42 H 1.09004 * 117.50176 * 359.97438 * 23 22 6 43 43 H 1.09000 * 117.50206 * 145.02267 * 23 22 6 44 44 H 1.08999 * 117.49846 * 214.98196 * 24 22 6 45 45 H 1.09003 * 117.49557 * 359.97362 * 24 22 6 46 46 H 1.08001 * 119.61850 * 180.26594 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 1 6.1379 0.8601 -0.0967 8 7 6.1965 -0.7475 1.2544 9 6 7.5521 -0.2893 1.5867 10 1 8.1269 -0.1598 0.6697 11 6 7.4714 1.0451 2.3306 12 6 8.2380 -1.3284 2.4760 13 6 8.4310 -2.6259 1.6887 14 6 9.1060 -3.6495 2.5649 15 1 9.3712 -3.3994 3.5815 16 6 9.3850 -4.9052 2.0686 17 7 9.0616 -5.2100 0.8308 18 14 10.2223 -6.1738 3.1544 19 1 9.1931 -6.9610 3.8801 20 1 11.0392 -7.0843 2.3124 21 1 11.1003 -5.4847 4.1341 22 6 6.2041 -1.0000 -1.1814 23 6 7.2664 -0.4012 -2.1056 24 6 5.8200 -0.5366 -2.5881 25 7 3.5254 -1.1995 -0.0071 26 6 2.2066 -1.1916 -0.0016 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6889 2.1424 0.0004 31 1 4.1734 2.0593 -0.0001 32 1 5.5542 -0.5528 2.0078 33 1 8.4772 1.3849 2.5776 34 1 6.9828 1.7854 1.6972 35 1 6.8966 0.9157 3.2477 36 1 7.6183 -1.5232 3.3513 37 1 9.2088 -0.9493 2.7953 38 1 9.0506 -2.4310 0.8133 39 1 7.4601 -3.0050 1.3695 40 1 9.2575 -6.0936 0.4818 41 1 6.2436 -2.0738 -0.9986 42 1 7.6279 0.6007 -1.8742 43 1 8.0044 -1.0812 -2.5311 44 1 5.6070 -1.3056 -3.3307 45 1 5.2299 0.3759 -2.6737 46 1 1.6671 -2.1273 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:28 Heat of formation + Delta-G solvation = 22.076316 kcal Electronic energy + Delta-G solvation = -23009.716872 eV Core-core repulsion = 19898.381448 eV Total energy + Delta-G solvation = -3111.335425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 7.17 seconds Orbital eigenvalues (eV) -41.40871 -39.23608 -37.36158 -35.29430 -34.58059 -33.26051 -32.32660 -30.65183 -28.33255 -26.97474 -25.81341 -24.53086 -23.34146 -23.17852 -22.67830 -21.32125 -20.87247 -18.36567 -17.65331 -17.42852 -17.00192 -16.49237 -16.02740 -15.79304 -15.47640 -15.23067 -15.02438 -14.54532 -14.23018 -14.04773 -13.94663 -13.73281 -13.56771 -13.38012 -13.19320 -13.09587 -12.85090 -12.66255 -12.56982 -12.40466 -12.30325 -12.21105 -11.82644 -11.53039 -11.20273 -11.18841 -10.97458 -10.88008 -10.65675 -10.46682 -10.13784 -9.69701 -9.08345 -8.11332 -6.22069 0.16239 0.44585 1.38609 1.41085 1.51589 2.44327 2.79200 2.91575 3.20265 3.22641 3.41160 3.82893 3.94903 3.98398 4.08071 4.09766 4.14114 4.15504 4.25392 4.33777 4.45190 4.50833 4.54603 4.70932 4.73179 4.79210 4.81218 4.85835 4.94985 4.98757 5.02579 5.06476 5.12299 5.19902 5.22154 5.23504 5.32178 5.39712 5.42454 5.51072 5.61372 5.85868 5.93390 6.07893 6.32593 6.37382 6.61377 6.98587 7.22934 7.45632 8.99691 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.003870 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.509524 B = 7234.333665 C = 7484.275116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C -0.078 4.078 4 C -0.163 4.163 5 C 0.109 3.891 6 C 0.183 3.817 7 H 0.073 0.927 8 N -0.675 5.675 9 C 0.092 3.908 10 H 0.065 0.935 11 C -0.169 4.169 12 C -0.087 4.087 13 C 0.045 3.955 14 C -0.543 4.543 15 H 0.054 0.946 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.262 1.262 22 C -0.136 4.136 23 C -0.178 4.178 24 C -0.161 4.161 25 N -0.490 5.490 26 C 0.077 3.923 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.337 0.663 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.050 0.950 38 H -0.024 1.024 39 H -0.001 1.001 40 H 0.259 0.741 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.154 18.541 -3.521 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.140 4.140 3 C -0.103 4.103 4 C -0.184 4.184 5 C -0.029 4.029 6 C 0.073 3.927 7 H 0.090 0.910 8 N -0.306 5.306 9 C -0.018 4.018 10 H 0.083 0.917 11 C -0.228 4.228 12 C -0.125 4.125 13 C 0.008 3.992 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.156 4.156 23 C -0.215 4.215 24 C -0.198 4.198 25 N -0.198 5.198 26 C -0.081 4.081 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.171 0.829 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.069 0.931 38 H -0.006 1.006 39 H 0.017 0.983 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.465 17.023 -3.936 23.334 hybrid contribution 0.123 0.131 0.527 0.557 sum -15.342 17.155 -3.410 23.265 Atomic orbital electron populations 1.20766 0.87999 1.04089 1.03421 1.21279 0.99127 0.93676 0.99939 1.21810 0.93383 0.99247 0.95888 1.22206 0.96164 0.98441 1.01548 1.21174 0.95488 0.89102 0.97134 1.19850 0.87950 0.95242 0.89628 0.90985 1.60290 1.03049 1.62932 1.04321 1.21575 0.89295 0.92973 0.97912 0.91718 1.22405 1.02954 0.96771 1.00624 1.21439 0.98064 0.95437 0.97560 1.18741 0.94588 0.92302 0.93573 1.21835 1.38600 0.98599 0.99091 0.92744 1.25963 0.96780 1.00779 0.96400 1.70144 1.49094 1.21432 1.16558 0.85522 0.78580 0.78669 0.78693 1.20030 1.20745 1.18666 1.22016 1.03889 0.98804 0.90867 1.23053 0.92110 1.02406 1.03907 1.22859 0.97707 1.02991 0.96279 1.67459 1.09063 1.32398 1.10900 1.23026 0.89418 0.98934 0.96721 0.89946 0.90762 0.89805 0.81707 0.82876 0.84357 0.91414 0.91477 0.92302 0.93911 0.93103 1.00584 0.98270 0.93184 0.91400 0.87264 0.90154 0.89515 0.87726 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.04 71.24 0.71 -0.42 16 2 C -0.14 -2.49 5.90 -19.77 -0.12 -2.61 16 3 C -0.08 -1.26 9.86 22.47 0.22 -1.04 16 4 C -0.16 -3.25 9.71 22.36 0.22 -3.03 16 5 C 0.11 3.00 5.06 42.55 0.22 3.22 16 6 C 0.18 5.51 2.36 44.17 0.10 5.61 16 7 H 0.07 1.82 6.60 -2.39 -0.02 1.81 16 8 N -0.67 -23.80 5.51 -473.32 -2.61 -26.41 16 9 C 0.09 3.18 2.40 44.91 0.11 3.29 16 10 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 11 C -0.17 -4.25 9.15 71.98 0.66 -3.59 16 12 C -0.09 -3.80 4.83 30.59 0.15 -3.65 16 13 C 0.05 2.57 4.86 29.85 0.15 2.71 16 14 C -0.54 -33.12 9.11 25.60 0.23 -32.88 16 15 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 17 N -0.93 -60.49 13.29 21.45 0.28 -60.21 16 18 Si 0.96 46.95 29.54 68.60 2.03 48.97 16 19 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.14 -4.74 4.98 -10.79 -0.05 -4.79 16 23 C -0.18 -5.32 10.18 30.62 0.31 -5.00 16 24 C -0.16 -4.49 9.87 30.62 0.30 -4.18 16 25 N -0.49 -15.56 10.01 -183.89 -1.84 -17.40 16 26 C 0.08 1.90 10.86 84.67 0.92 2.82 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 29 H 0.08 0.64 8.10 -2.38 -0.02 0.62 16 30 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.15 2.21 7.95 -2.91 -0.02 2.19 16 32 H 0.34 11.29 8.07 -89.70 -0.72 10.56 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.38 7.44 -2.39 -0.02 1.37 16 35 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 39 H 0.00 -0.07 7.75 -2.39 -0.02 -0.09 16 40 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.11 2.74 8.05 -2.38 -0.02 2.72 16 43 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -75.33 377.62 2.67 -72.66 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.21 Total: 25.60 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 4.59 Total: -43.21 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -4.16 Total: -104.02 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -75.33 2.67 -72.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.741 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.17 seconds