Wall clock time and date at job start Fri Apr 10 2020 19:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38670 * 120.41687 * 2 1 4 4 C 1.38637 * 118.42090 * 179.75672 * 3 2 1 5 5 C 1.38231 * 119.15602 * 0.50901 * 4 3 2 6 6 C 1.50696 * 119.61548 * 179.75807 * 5 4 3 7 7 H 1.09001 * 109.47077 * 239.29661 * 6 5 4 8 8 N 1.46899 * 109.47560 * 359.29314 * 6 5 4 9 9 C 1.46898 * 111.00447 * 193.46909 * 8 6 5 10 10 H 1.08994 * 109.46959 * 5.11653 * 9 8 6 11 11 C 1.53010 * 109.46724 * 245.12126 * 9 8 6 12 12 C 1.52995 * 109.47431 * 125.12023 * 9 8 6 13 13 C 1.52998 * 109.47158 * 294.99993 * 12 9 8 14 14 C 1.50700 * 109.47057 * 179.97438 * 13 12 9 15 15 H 1.08003 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99720 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00259 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46648 * 60.00758 * 18 16 14 20 20 H 1.48496 * 109.47327 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47336 * 300.00849 * 18 16 14 22 22 C 1.53001 * 109.47531 * 119.29750 * 6 5 4 23 23 C 1.52995 * 117.50109 * 65.52469 * 22 6 5 24 24 C 1.52997 * 60.00146 * 252.51783 * 23 22 6 25 25 N 1.31854 * 120.76427 * 359.47931 * 5 4 3 26 26 C 1.31882 * 121.72459 * 0.27544 * 25 5 4 27 27 H 1.09008 * 109.47161 * 269.97517 * 1 2 3 28 28 H 1.09000 * 109.47227 * 29.97521 * 1 2 3 29 29 H 1.09000 * 109.47661 * 149.97999 * 1 2 3 30 30 H 1.08000 * 120.79467 * 0.05095 * 3 2 1 31 31 H 1.07990 * 120.42272 * 180.28372 * 4 3 2 32 32 H 1.00903 * 110.99645 * 317.42033 * 8 6 5 33 33 H 1.08994 * 109.46756 * 67.03673 * 11 9 8 34 34 H 1.09001 * 109.46360 * 187.03402 * 11 9 8 35 35 H 1.09001 * 109.46940 * 307.02987 * 11 9 8 36 36 H 1.09008 * 109.47013 * 54.99788 * 12 9 8 37 37 H 1.08997 * 109.47281 * 174.99851 * 12 9 8 38 38 H 1.08998 * 109.47052 * 299.99951 * 13 12 9 39 39 H 1.09003 * 109.46914 * 60.00155 * 13 12 9 40 40 H 0.96996 * 119.99673 * 179.97438 * 17 16 14 41 41 H 1.09000 * 115.56367 * 211.22360 * 22 6 5 42 42 H 1.09005 * 117.49793 * 145.02196 * 23 22 6 43 43 H 1.09007 * 117.49823 * 0.02562 * 23 22 6 44 44 H 1.08998 * 117.49968 * 107.49268 * 24 23 22 45 45 H 1.09004 * 117.49193 * 252.48856 * 24 23 22 46 46 H 1.07999 * 119.61108 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1958 0.0000 4 6 3.5945 1.1476 0.0052 5 6 4.2255 -0.0823 -0.0006 6 6 5.7311 -0.1468 -0.0006 7 1 6.0718 -0.6824 -0.8867 8 7 6.2797 1.2158 -0.0110 9 6 7.7134 1.2038 -0.3308 10 1 8.0222 0.1879 -0.5768 11 6 8.5096 1.7003 0.8778 12 6 7.9770 2.1208 -1.5268 13 6 7.2811 1.5550 -2.7663 14 6 7.5401 2.4585 -3.9443 15 1 8.1414 3.3472 -3.8212 16 6 7.0105 2.1501 -5.1793 17 7 6.2787 1.0676 -5.3293 18 14 7.3310 3.2705 -6.6393 19 1 8.7928 3.3548 -6.8869 20 1 6.6557 2.7213 -7.8424 21 1 6.7991 4.6262 -6.3491 22 6 6.2103 -0.8799 1.2540 23 6 5.8520 -2.3614 1.3867 24 6 5.1481 -1.3227 2.2623 25 7 3.5254 -1.1996 -0.0006 26 6 2.2066 -1.1916 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6889 2.1424 0.0008 31 1 4.1734 2.0592 0.0099 32 1 5.7711 1.8055 -0.6527 33 1 8.4218 0.9803 1.6913 34 1 9.5583 1.8103 0.6015 35 1 8.1160 2.6640 1.2012 36 1 7.5874 3.1164 -1.3141 37 1 9.0500 2.1816 -1.7085 38 1 7.6706 0.5594 -2.9790 39 1 6.2080 1.4942 -2.5846 40 1 5.9058 0.8509 -6.1980 41 1 7.1745 -0.5581 1.6474 42 1 6.5806 -3.0143 1.8674 43 1 5.2752 -2.8140 0.5800 44 1 4.1081 -1.0919 2.0318 45 1 5.4134 -1.2926 3.3191 46 1 1.6672 -2.1272 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:38 Heat of formation + Delta-G solvation = 51.197686 kcal Electronic energy + Delta-G solvation = -23332.871265 eV Core-core repulsion = 20222.798638 eV Total energy + Delta-G solvation = -3110.072627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57349 -37.98484 -36.17935 -33.58675 -33.13116 -32.23114 -30.63106 -29.29939 -27.37042 -25.34365 -24.57558 -23.48175 -22.14179 -21.76534 -21.40418 -19.95797 -19.35076 -16.81421 -16.42917 -16.02531 -15.64731 -15.08240 -15.01204 -14.51510 -14.43613 -13.97809 -13.54285 -13.36636 -12.94901 -12.76813 -12.62388 -12.52211 -12.46309 -12.34577 -11.69679 -11.58834 -11.47396 -11.18704 -11.13267 -11.00968 -10.89278 -10.52361 -10.28009 -9.95850 -9.83276 -9.80294 -9.55613 -9.32671 -9.16079 -9.10295 -8.60008 -8.37625 -7.99253 -6.01750 -4.04757 1.24963 1.44801 3.31482 3.36204 3.38449 3.88742 3.96839 4.36206 4.44011 4.60172 4.84818 4.86769 5.02015 5.05011 5.18550 5.26152 5.33651 5.38242 5.46890 5.51160 5.57498 5.67434 5.76670 5.79494 5.84061 5.90448 5.95203 5.97682 6.09754 6.15488 6.19888 6.26733 6.33321 6.38727 6.42989 6.50193 6.55767 6.61014 6.85526 6.88232 7.06223 7.46794 7.60219 7.77051 7.78885 7.96735 8.16295 8.39743 9.01880 9.59727 11.09072 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.005015 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.928921 B = 5581.944767 C = 7023.532691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.152 4.152 5 C 0.140 3.860 6 C 0.168 3.832 7 H 0.069 0.931 8 N -0.678 5.678 9 C 0.081 3.919 10 H 0.057 0.943 11 C -0.133 4.133 12 C -0.127 4.127 13 C 0.022 3.978 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.130 4.130 23 C -0.172 4.172 24 C -0.177 4.177 25 N -0.473 5.473 26 C 0.096 3.904 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.350 0.650 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.013 0.987 39 H 0.012 0.988 40 H 0.261 0.739 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.631 -3.265 14.596 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.102 4.102 4 C -0.172 4.172 5 C 0.002 3.998 6 C 0.057 3.943 7 H 0.086 0.914 8 N -0.313 5.313 9 C -0.029 4.029 10 H 0.075 0.925 11 C -0.191 4.191 12 C -0.166 4.166 13 C -0.015 4.015 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.149 4.149 23 C -0.210 4.210 24 C -0.214 4.214 25 N -0.182 5.182 26 C -0.062 4.062 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.179 -4.129 15.120 17.239 hybrid contribution -0.394 1.224 -1.908 2.300 sum -7.573 -2.905 13.212 15.503 Atomic orbital electron populations 1.20671 0.90600 1.02939 1.02140 1.20849 0.97302 0.94412 1.02663 1.21465 0.94075 0.98022 0.96623 1.22007 0.94823 0.99848 1.00491 1.21054 0.96005 0.88550 0.94147 1.19802 0.87183 0.90536 0.96731 0.91351 1.60777 1.03939 1.09148 1.57443 1.21675 0.87065 0.99496 0.94616 0.92464 1.21828 0.98550 1.01130 0.97600 1.22105 1.01137 0.98244 0.95074 1.19110 0.95135 0.96218 0.91086 1.21192 1.31962 1.08911 0.93932 0.92745 1.25021 0.95163 0.95234 0.98901 1.69957 1.34262 1.25042 1.24046 0.86679 0.78456 0.80967 0.82038 1.20226 1.21317 1.20245 1.22120 0.99510 0.95969 0.97268 1.22983 1.03151 0.91565 1.03276 1.23022 0.98188 1.04630 0.95600 1.67403 1.07937 1.30990 1.11860 1.22538 0.89726 0.97259 0.96651 0.91291 0.91507 0.91406 0.85100 0.83822 0.82734 0.93505 0.93154 0.92601 0.92739 0.92554 0.96891 0.97015 0.92976 0.87249 0.89719 0.87569 0.88829 0.90056 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.04 36.00 0.36 -0.56 16 2 C -0.15 -1.82 5.90 -104.49 -0.62 -2.44 16 3 C -0.08 -0.98 9.86 -39.27 -0.39 -1.37 16 4 C -0.15 -2.28 9.10 -39.44 -0.36 -2.64 16 5 C 0.14 2.25 4.83 -82.59 -0.40 1.86 16 6 C 0.17 2.78 2.65 -68.87 -0.18 2.59 16 7 H 0.07 1.32 7.82 -51.93 -0.41 0.92 16 8 N -0.68 -11.10 5.42 -100.96 -0.55 -11.65 16 9 C 0.08 1.37 2.20 -67.71 -0.15 1.22 16 10 H 0.06 1.02 7.31 -51.93 -0.38 0.64 16 11 C -0.13 -1.90 9.45 37.16 0.35 -1.55 16 12 C -0.13 -2.55 4.48 -26.73 -0.12 -2.67 16 13 C 0.02 0.55 4.83 -27.88 -0.13 0.41 16 14 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.13 -1.89 5.69 -90.62 -0.52 -2.41 16 23 C -0.17 -2.34 9.79 -26.74 -0.26 -2.60 16 24 C -0.18 -2.42 9.48 -26.73 -0.25 -2.67 16 25 N -0.47 -7.38 6.96 -9.48 -0.07 -7.44 16 26 C 0.10 1.27 10.86 -17.55 -0.19 1.08 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 2.09 6.11 -52.49 -0.32 1.77 16 32 H 0.35 6.18 4.86 -39.29 -0.19 5.99 16 33 H 0.05 0.62 6.65 -51.93 -0.35 0.27 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.31 6.95 -51.93 -0.36 -0.05 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.11 1.56 6.17 -51.93 -0.32 1.24 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.11 1.56 7.24 -51.92 -0.38 1.19 16 44 H 0.09 1.38 5.48 -51.93 -0.28 1.10 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -30.22 362.32 -10.30 -40.52 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.59 Total: 7.77 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -3.27 Total: -25.14 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.12 Total: -45.28 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.22 -10.30 -40.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.717 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds