Wall clock time and date at job start Fri Apr 10 2020 19:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38680 * 120.41507 * 2 1 4 4 C 1.38632 * 118.41996 * 180.02562 * 3 2 1 5 5 C 1.38225 * 119.16046 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.61780 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47227 * 4.99811 * 6 5 4 8 8 N 1.46901 * 109.47373 * 245.00039 * 6 5 4 9 9 C 1.46898 * 111.00419 * 155.00071 * 8 6 5 10 10 H 1.09004 * 109.46757 * 324.99904 * 9 8 6 11 11 C 1.52998 * 109.47198 * 84.99721 * 9 8 6 12 12 C 1.52998 * 109.47121 * 205.00200 * 9 8 6 13 13 C 1.52997 * 109.47336 * 64.99811 * 12 9 8 14 14 C 1.50703 * 109.47213 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99641 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00061 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47228 * 120.00092 * 18 16 14 21 21 H 1.48503 * 109.47459 * 240.00376 * 18 16 14 22 22 C 1.52996 * 109.47365 * 124.99742 * 6 5 4 23 23 C 1.53000 * 117.49997 * 300.00395 * 22 6 5 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 6 25 25 N 1.31861 * 120.76598 * 0.25490 * 5 4 3 26 26 C 1.31888 * 121.72063 * 359.47249 * 25 5 4 27 27 H 1.09003 * 109.47232 * 90.00754 * 1 2 3 28 28 H 1.09004 * 109.47124 * 209.99700 * 1 2 3 29 29 H 1.08995 * 109.47574 * 329.99455 * 1 2 3 30 30 H 1.07995 * 120.78902 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.41833 * 180.02562 * 4 3 2 32 32 H 1.00903 * 111.00058 * 278.95168 * 8 6 5 33 33 H 1.09000 * 109.46612 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47235 * 300.00078 * 11 9 8 35 35 H 1.08996 * 109.46804 * 60.00246 * 11 9 8 36 36 H 1.09004 * 109.47133 * 184.99480 * 12 9 8 37 37 H 1.09001 * 109.47126 * 304.99503 * 12 9 8 38 38 H 1.08997 * 109.47052 * 299.99689 * 13 12 9 39 39 H 1.09001 * 109.47265 * 59.99776 * 13 12 9 40 40 H 0.97002 * 120.00371 * 179.97438 * 17 16 14 41 41 H 1.09007 * 115.55004 * 85.67067 * 22 6 5 42 42 H 1.09002 * 117.49833 * 359.97438 * 23 22 6 43 43 H 1.09002 * 117.49953 * 144.99738 * 23 22 6 44 44 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 45 45 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 46 46 H 1.07997 * 119.60913 * 180.26622 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1477 -0.0005 5 6 4.2256 -0.0821 -0.0016 6 6 5.7311 -0.1466 -0.0028 7 1 6.1380 0.8606 0.0869 8 7 6.1944 -0.7517 -1.2586 9 6 7.5613 -0.3191 -1.5788 10 1 7.7000 0.7134 -1.2582 11 6 8.5640 -1.2178 -0.8523 12 6 7.7873 -0.4190 -3.0887 13 6 6.8701 0.5718 -3.8084 14 6 7.0933 0.4738 -5.2956 15 1 7.8166 -0.2255 -5.6881 16 6 6.3733 1.2762 -6.1551 17 7 5.4921 2.1274 -5.6770 18 14 6.6504 1.1553 -7.9984 19 1 7.6876 0.1296 -8.2768 20 1 5.3812 0.7688 -8.6655 21 1 7.1023 2.4708 -8.5184 22 6 6.2062 -0.9955 1.1781 23 6 5.8227 -0.5283 2.5836 24 6 7.2681 -0.3922 2.1008 25 7 3.5255 -1.1995 -0.0071 26 6 2.2066 -1.1915 -0.0015 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6888 2.1423 0.0004 31 1 4.1734 2.0594 -0.0001 32 1 6.1337 -1.7581 -1.2191 33 1 9.5781 -0.8964 -1.0896 34 1 8.4029 -1.1466 0.2233 35 1 8.4252 -2.2502 -1.1730 36 1 8.8268 -0.1834 -3.3168 37 1 7.5624 -1.4316 -3.4235 38 1 5.8307 0.3362 -3.5803 39 1 7.0951 1.5844 -3.4735 40 1 4.9857 2.6922 -6.2816 41 1 6.2469 -2.0699 0.9985 42 1 5.2322 0.3841 2.6670 43 1 5.6110 -1.2953 3.3287 44 1 7.6283 0.6096 1.8666 45 1 8.0073 -1.0698 2.5280 46 1 1.6674 -2.1272 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:44 Heat of formation + Delta-G solvation = 39.368769 kcal Electronic energy + Delta-G solvation = -23064.018700 eV Core-core repulsion = 19953.433133 eV Total energy + Delta-G solvation = -3110.585568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29290 -38.31841 -35.93811 -33.77763 -32.95461 -31.99685 -30.91307 -29.10451 -27.27198 -25.18828 -24.49354 -23.45442 -22.45442 -21.65439 -21.24224 -20.34368 -19.60020 -16.59857 -16.13246 -16.08301 -15.97024 -14.99973 -14.72622 -14.49912 -14.35258 -14.01805 -13.79783 -13.00249 -12.98590 -12.79992 -12.59511 -12.49341 -12.35887 -12.22056 -11.99408 -11.63499 -11.49017 -11.36997 -11.20056 -11.08034 -10.83361 -10.47563 -10.37529 -10.29315 -9.85580 -9.57967 -9.54512 -9.21861 -9.09963 -8.82615 -8.58165 -8.19473 -7.82161 -5.84808 -3.85367 1.29693 1.50874 3.38410 3.45532 3.49969 3.75280 3.92491 4.46564 4.51628 4.57452 4.80667 4.85945 4.89354 4.98173 5.05982 5.12844 5.22789 5.36026 5.49695 5.50913 5.53103 5.54900 5.58935 5.66580 5.70248 5.74327 5.81979 5.83842 5.90221 6.00400 6.06575 6.18113 6.20330 6.36657 6.39496 6.40121 6.51609 6.74973 6.90532 6.96618 7.37513 7.57045 7.89127 7.90714 8.13168 8.25850 8.28895 8.62588 9.24052 9.76993 11.26335 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.004912 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.976906 B = 5698.971838 C = 7544.558957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.155 4.155 5 C 0.156 3.844 6 C 0.171 3.829 7 H 0.089 0.911 8 N -0.655 5.655 9 C 0.087 3.913 10 H 0.069 0.931 11 C -0.188 4.188 12 C -0.098 4.098 13 C 0.030 3.970 14 C -0.516 4.516 15 H 0.051 0.949 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.161 4.161 23 C -0.175 4.175 24 C -0.179 4.179 25 N -0.466 5.466 26 C 0.098 3.902 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.344 0.656 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.006 0.994 40 H 0.256 0.744 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -4.346 18.197 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.101 4.101 4 C -0.176 4.176 5 C 0.017 3.983 6 C 0.059 3.941 7 H 0.107 0.893 8 N -0.284 5.284 9 C -0.022 4.022 10 H 0.088 0.912 11 C -0.247 4.247 12 C -0.136 4.136 13 C -0.007 4.007 14 C -0.554 4.554 15 H 0.069 0.931 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.714 3.286 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.181 4.181 23 C -0.213 4.213 24 C -0.216 4.216 25 N -0.174 5.174 26 C -0.060 4.060 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.621 -4.544 17.698 18.847 hybrid contribution 0.106 0.334 -0.522 0.629 sum -4.515 -4.210 17.176 18.251 Atomic orbital electron populations 1.20674 0.90673 1.02538 1.02496 1.20843 0.97257 0.94439 1.02612 1.21393 0.93987 0.97998 0.96768 1.21929 0.95095 0.99098 1.01456 1.20969 0.95635 0.88219 0.93431 1.20063 0.88482 0.97920 0.87592 0.89313 1.60513 1.23913 1.13808 1.30190 1.21769 0.85302 0.97723 0.97415 0.91229 1.22714 1.00560 1.00470 1.00914 1.21629 0.99701 1.01048 0.91268 1.18990 0.95620 0.92801 0.93313 1.21402 1.21180 1.20352 0.92474 0.93083 1.24991 0.95420 0.95664 0.98367 1.69992 1.25251 1.24018 1.34275 0.86644 0.77904 0.77687 0.86389 1.19863 1.21179 1.21199 1.23144 1.03007 1.00167 0.91776 1.22858 0.97919 1.03021 0.97524 1.23034 0.92079 1.02342 1.04154 1.67390 1.07723 1.31134 1.11122 1.22548 0.89973 0.97109 0.96377 0.91012 0.91542 0.91701 0.85230 0.85080 0.83666 0.92682 0.92283 0.93047 0.93553 0.93522 0.95018 0.97588 0.93403 0.87509 0.89182 0.89266 0.88771 0.89027 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.04 36.00 0.36 -0.59 16 2 C -0.15 -1.85 5.90 -104.48 -0.62 -2.46 16 3 C -0.08 -0.98 9.86 -39.27 -0.39 -1.37 16 4 C -0.16 -2.26 9.71 -39.44 -0.38 -2.64 16 5 C 0.16 2.40 5.41 -82.59 -0.45 1.95 16 6 C 0.17 2.49 2.53 -68.87 -0.17 2.31 16 7 H 0.09 1.29 6.92 -51.93 -0.36 0.93 16 8 N -0.65 -11.09 5.49 -100.96 -0.55 -11.64 16 9 C 0.09 1.49 2.59 -67.72 -0.18 1.31 16 10 H 0.07 1.22 7.43 -51.93 -0.39 0.83 16 11 C -0.19 -2.59 8.92 37.16 0.33 -2.26 16 12 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 13 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 14 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -27.89 13.29 55.43 0.74 -27.16 16 18 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.16 -1.95 3.61 -90.59 -0.33 -2.28 16 23 C -0.18 -1.90 9.87 -26.73 -0.26 -2.16 16 24 C -0.18 -1.87 8.38 -26.69 -0.22 -2.09 16 25 N -0.47 -7.21 10.03 -9.47 -0.10 -7.31 16 26 C 0.10 1.32 10.86 -17.55 -0.19 1.13 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.74 7.95 -52.49 -0.42 1.32 16 32 H 0.34 5.65 8.08 -39.29 -0.32 5.33 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.72 4.71 -51.93 -0.24 0.47 16 35 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.93 7.75 -51.93 -0.40 0.52 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.11 1.35 7.93 -51.93 -0.41 0.94 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.97 8.05 -51.93 -0.42 0.56 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -32.53 372.02 -10.49 -43.02 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.99 Total: 4.73 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -3.17 Total: -24.66 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.09 Total: -46.11 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.53 -10.49 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.387 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds