Wall clock time and date at job start Fri Apr 10 2020 19:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38680 * 120.41507 * 2 1 4 4 C 1.38632 * 118.41996 * 180.02562 * 3 2 1 5 5 C 1.38225 * 119.16046 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.61780 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47227 * 4.99811 * 6 5 4 8 8 N 1.46901 * 109.47373 * 245.00039 * 6 5 4 9 9 C 1.46898 * 111.00419 * 155.00071 * 8 6 5 10 10 H 1.09004 * 109.46757 * 324.99904 * 9 8 6 11 11 C 1.52998 * 109.47198 * 84.99721 * 9 8 6 12 12 C 1.52998 * 109.47121 * 205.00200 * 9 8 6 13 13 C 1.52997 * 109.47336 * 64.99811 * 12 9 8 14 14 C 1.50703 * 109.47213 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99641 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00061 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47181 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47228 * 120.00092 * 18 16 14 21 21 H 1.48503 * 109.47459 * 240.00376 * 18 16 14 22 22 C 1.52996 * 109.47365 * 124.99742 * 6 5 4 23 23 C 1.53000 * 117.49997 * 300.00395 * 22 6 5 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 6 25 25 N 1.31861 * 120.76598 * 0.25490 * 5 4 3 26 26 C 1.31888 * 121.72063 * 359.47249 * 25 5 4 27 27 H 1.09003 * 109.47232 * 90.00754 * 1 2 3 28 28 H 1.09004 * 109.47124 * 209.99700 * 1 2 3 29 29 H 1.08995 * 109.47574 * 329.99455 * 1 2 3 30 30 H 1.07995 * 120.78902 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.41833 * 180.02562 * 4 3 2 32 32 H 1.00903 * 111.00058 * 278.95168 * 8 6 5 33 33 H 1.09000 * 109.46612 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47235 * 300.00078 * 11 9 8 35 35 H 1.08996 * 109.46804 * 60.00246 * 11 9 8 36 36 H 1.09004 * 109.47133 * 184.99480 * 12 9 8 37 37 H 1.09001 * 109.47126 * 304.99503 * 12 9 8 38 38 H 1.08997 * 109.47052 * 299.99689 * 13 12 9 39 39 H 1.09001 * 109.47265 * 59.99776 * 13 12 9 40 40 H 0.97002 * 120.00371 * 179.97438 * 17 16 14 41 41 H 1.09007 * 115.55004 * 85.67067 * 22 6 5 42 42 H 1.09002 * 117.49833 * 359.97438 * 23 22 6 43 43 H 1.09002 * 117.49953 * 144.99738 * 23 22 6 44 44 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 45 45 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 46 46 H 1.07997 * 119.60913 * 180.26622 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1477 -0.0005 5 6 4.2256 -0.0821 -0.0016 6 6 5.7311 -0.1466 -0.0028 7 1 6.1380 0.8606 0.0869 8 7 6.1944 -0.7517 -1.2586 9 6 7.5613 -0.3191 -1.5788 10 1 7.7000 0.7134 -1.2582 11 6 8.5640 -1.2178 -0.8523 12 6 7.7873 -0.4190 -3.0887 13 6 6.8701 0.5718 -3.8084 14 6 7.0933 0.4738 -5.2956 15 1 7.8166 -0.2255 -5.6881 16 6 6.3733 1.2762 -6.1551 17 7 5.4921 2.1274 -5.6770 18 14 6.6504 1.1553 -7.9984 19 1 7.6876 0.1296 -8.2768 20 1 5.3812 0.7688 -8.6655 21 1 7.1023 2.4708 -8.5184 22 6 6.2062 -0.9955 1.1781 23 6 5.8227 -0.5283 2.5836 24 6 7.2681 -0.3922 2.1008 25 7 3.5255 -1.1995 -0.0071 26 6 2.2066 -1.1915 -0.0015 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6888 2.1423 0.0004 31 1 4.1734 2.0594 -0.0001 32 1 6.1337 -1.7581 -1.2191 33 1 9.5781 -0.8964 -1.0896 34 1 8.4029 -1.1466 0.2233 35 1 8.4252 -2.2502 -1.1730 36 1 8.8268 -0.1834 -3.3168 37 1 7.5624 -1.4316 -3.4235 38 1 5.8307 0.3362 -3.5803 39 1 7.0951 1.5844 -3.4735 40 1 4.9857 2.6922 -6.2816 41 1 6.2469 -2.0699 0.9985 42 1 5.2322 0.3841 2.6670 43 1 5.6110 -1.2953 3.3287 44 1 7.6283 0.6096 1.8666 45 1 8.0073 -1.0698 2.5280 46 1 1.6674 -2.1272 -0.0020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:43 Heat of formation + Delta-G solvation = 20.689801 kcal Electronic energy + Delta-G solvation = -23064.828681 eV Core-core repulsion = 19953.433133 eV Total energy + Delta-G solvation = -3111.395548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35055 -39.42588 -37.23715 -35.21723 -34.59437 -33.19314 -32.38754 -30.68264 -28.29422 -27.01041 -25.70624 -24.52112 -23.43802 -22.98218 -22.62803 -21.61682 -20.97642 -18.38896 -17.62167 -17.25166 -17.05494 -16.50540 -16.04548 -15.88801 -15.55943 -15.07831 -14.90063 -14.61039 -14.18246 -14.00091 -13.84660 -13.80844 -13.56531 -13.36527 -13.17814 -13.07447 -12.86814 -12.69175 -12.49242 -12.39992 -12.34295 -12.22118 -11.85113 -11.55911 -11.36961 -11.16729 -11.03046 -10.79633 -10.61668 -10.49316 -10.23270 -9.61719 -9.10385 -8.14069 -6.24356 0.23862 0.44958 1.38349 1.39201 1.52334 2.43080 2.81759 2.86489 3.18135 3.36191 3.48988 3.77660 3.90161 3.99375 4.06803 4.10228 4.11401 4.17063 4.26158 4.36743 4.45667 4.52698 4.58685 4.69957 4.76217 4.78964 4.81790 4.84973 4.95598 4.98799 5.02112 5.11404 5.13355 5.20193 5.23122 5.24281 5.34094 5.34509 5.41892 5.50182 5.59689 5.88346 5.90111 6.03019 6.30554 6.35211 6.62297 6.95627 7.17674 7.43659 8.97452 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.004912 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.976906 B = 5698.971838 C = 7544.558957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.178 4.178 5 C 0.135 3.865 6 C 0.176 3.824 7 H 0.080 0.920 8 N -0.676 5.676 9 C 0.097 3.903 10 H 0.061 0.939 11 C -0.175 4.175 12 C -0.088 4.088 13 C 0.042 3.958 14 C -0.541 4.541 15 H 0.054 0.946 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.277 1.277 22 C -0.167 4.167 23 C -0.169 4.169 24 C -0.166 4.166 25 N -0.486 5.486 26 C 0.082 3.918 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.132 0.868 32 H 0.344 0.656 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.043 0.957 38 H -0.002 1.002 39 H -0.023 1.023 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -5.151 18.617 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.150 4.150 3 C -0.110 4.110 4 C -0.198 4.198 5 C -0.003 4.003 6 C 0.065 3.935 7 H 0.099 0.901 8 N -0.307 5.307 9 C -0.013 4.013 10 H 0.079 0.921 11 C -0.233 4.233 12 C -0.126 4.126 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.785 3.215 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.202 1.202 22 C -0.188 4.188 23 C -0.207 4.207 24 C -0.203 4.203 25 N -0.194 5.194 26 C -0.076 4.076 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.170 0.830 31 H 0.150 0.850 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.016 0.984 39 H -0.004 1.004 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.127 0.873 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.582 -5.353 18.134 19.455 hybrid contribution -0.004 0.618 -0.649 0.896 sum -4.585 -4.735 17.485 18.686 Atomic orbital electron populations 1.20737 0.88001 1.04260 1.03046 1.21237 0.99174 0.93700 1.00889 1.21753 0.93570 0.99466 0.96256 1.22140 0.96237 0.99084 1.02338 1.21123 0.96104 0.88623 0.94484 1.19970 0.88284 0.97668 0.87564 0.90143 1.60391 1.23955 1.13953 1.32359 1.21531 0.86718 0.98284 0.94758 0.92060 1.22562 0.99589 0.99655 1.01525 1.21467 0.98400 0.98859 0.93907 1.18787 0.94916 0.92697 0.93144 1.21849 1.21484 1.20639 0.93978 0.92733 1.25947 0.94915 0.95067 1.03910 1.70134 1.26124 1.24782 1.36333 0.85471 0.78167 0.78215 0.79619 1.18660 1.20564 1.20237 1.22894 1.04897 0.99464 0.91497 1.22868 0.98271 1.02972 0.96613 1.23109 0.92070 1.02523 1.02597 1.67370 1.08836 1.31335 1.11876 1.23063 0.89674 0.98689 0.96151 0.90835 0.89698 0.90203 0.83044 0.84966 0.83609 0.91926 0.90403 0.92613 0.93042 0.93867 0.98362 1.00418 0.93105 0.87857 0.89675 0.88229 0.88706 0.87330 0.81146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.04 71.23 0.71 -0.93 16 2 C -0.15 -3.54 5.90 -19.78 -0.12 -3.65 16 3 C -0.08 -2.19 9.86 22.47 0.22 -1.97 16 4 C -0.18 -5.36 9.71 22.36 0.22 -5.14 16 5 C 0.13 4.28 5.41 42.55 0.23 4.51 16 6 C 0.18 5.27 2.53 44.17 0.11 5.38 16 7 H 0.08 2.46 6.92 -2.39 -0.02 2.44 16 8 N -0.68 -23.62 5.49 -473.33 -2.60 -26.22 16 9 C 0.10 3.33 2.59 44.91 0.12 3.44 16 10 H 0.06 2.20 7.43 -2.39 -0.02 2.18 16 11 C -0.17 -4.56 8.92 71.98 0.64 -3.92 16 12 C -0.09 -3.82 4.83 30.59 0.15 -3.67 16 13 C 0.04 2.34 4.86 29.85 0.15 2.48 16 14 C -0.54 -32.57 9.11 25.60 0.23 -32.34 16 15 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 17 N -0.93 -59.43 13.29 21.45 0.28 -59.14 16 18 Si 0.96 46.26 29.54 68.60 2.03 48.28 16 19 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.17 -3.97 3.61 -10.77 -0.04 -4.01 16 23 C -0.17 -3.49 9.87 30.60 0.30 -3.18 16 24 C -0.17 -3.18 8.38 30.62 0.26 -2.93 16 25 N -0.49 -15.27 10.03 -183.89 -1.84 -17.12 16 26 C 0.08 2.17 10.86 84.67 0.92 3.09 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.05 8.09 -2.38 -0.02 1.03 16 29 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.13 3.75 7.95 -2.91 -0.02 3.73 16 32 H 0.34 11.57 8.08 -89.69 -0.72 10.85 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.75 4.71 -2.39 -0.01 1.73 16 35 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.00 -0.13 7.75 -2.39 -0.02 -0.15 16 39 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.10 2.55 7.93 -2.38 -0.02 2.53 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 45 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -71.60 372.02 2.65 -68.95 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.22 Total: 27.70 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 4.56 Total: -42.45 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -4.16 Total: -102.48 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.60 2.65 -68.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.639 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds