Wall clock time and date at job start Fri Apr 10 2020 19:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38678 * 120.78707 * 2 1 4 4 C 1.38179 * 119.16251 * 179.97438 * 3 2 1 5 5 N 1.31879 * 120.76730 * 0.02628 * 4 3 2 6 6 C 1.31856 * 121.72546 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61938 * 179.97438 * 6 5 4 8 8 C 1.53002 * 115.55056 * 134.10618 * 7 6 5 9 9 N 1.46894 * 109.47624 * 279.59885 * 8 7 6 10 10 C 1.46899 * 111.00583 * 174.87080 * 9 8 7 11 11 H 1.09000 * 109.46953 * 34.99679 * 10 9 8 12 12 C 1.53002 * 109.47006 * 275.00042 * 10 9 8 13 13 C 1.53001 * 109.47434 * 154.99596 * 10 9 8 14 14 C 1.53002 * 109.46877 * 295.00181 * 13 10 9 15 15 C 1.50700 * 109.46740 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99944 * 179.72251 * 15 14 13 18 18 N 1.31514 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47280 * 90.00410 * 19 17 15 21 21 H 1.48505 * 109.46833 * 209.99942 * 19 17 15 22 22 H 1.48494 * 109.47341 * 329.99678 * 19 17 15 23 23 C 1.52997 * 117.52035 * 279.80875 * 7 6 5 24 24 C 1.52995 * 117.50144 * 348.43927 * 7 6 5 25 25 C 1.38226 * 120.76558 * 0.27095 * 6 5 4 26 26 H 1.09003 * 109.47407 * 89.99656 * 1 2 3 27 27 H 1.09006 * 109.46598 * 209.99699 * 1 2 3 28 28 H 1.08998 * 109.47275 * 329.98839 * 1 2 3 29 29 H 1.08005 * 120.41779 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.61722 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47429 * 159.59262 * 8 7 6 32 32 H 1.09004 * 109.46901 * 39.59905 * 8 7 6 33 33 H 1.00909 * 110.99256 * 298.82603 * 9 8 7 34 34 H 1.08995 * 109.47327 * 59.99689 * 12 10 9 35 35 H 1.08999 * 109.46738 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46306 * 299.99287 * 12 10 9 37 37 H 1.08993 * 109.47196 * 175.00208 * 13 10 9 38 38 H 1.08998 * 109.46616 * 55.00075 * 13 10 9 39 39 H 1.08993 * 109.47185 * 60.00021 * 14 13 10 40 40 H 1.08998 * 109.47412 * 299.99407 * 14 13 10 41 41 H 0.96993 * 120.00171 * 179.97438 * 18 17 15 42 42 H 1.09001 * 117.50229 * 214.96707 * 23 7 6 43 43 H 1.09000 * 117.50121 * 359.97438 * 23 7 6 44 44 H 1.09009 * 117.49700 * 359.97438 * 24 7 6 45 45 H 1.08999 * 117.50594 * 144.99384 * 24 7 6 46 46 H 1.07996 * 120.42370 * 179.70229 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1514 0.0005 7 6 4.3801 -2.4398 -0.0001 8 6 3.9015 -3.5026 0.9910 9 7 4.4196 -3.1922 2.3301 10 6 3.8815 -4.1226 3.3315 11 1 3.7675 -5.1105 2.8854 12 6 2.5191 -3.6205 3.8141 13 6 4.8436 -4.2069 4.5183 14 6 6.1657 -4.8257 4.0599 15 6 7.1135 -4.9082 5.2287 16 1 6.8037 -4.5550 6.2011 17 6 8.3740 -5.4403 5.0578 18 7 8.7490 -5.8763 3.8751 19 14 9.5485 -5.5432 6.5067 20 1 9.3649 -6.8427 7.2015 21 1 10.9470 -5.4361 6.0188 22 1 9.2676 -4.4326 7.4516 23 6 4.9440 -2.9240 -1.3374 24 6 5.8832 -2.3540 -0.2726 25 6 2.2167 -1.1909 -0.0051 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.6966 2.1378 0.0004 30 1 4.1582 2.0755 0.0001 31 1 4.2656 -4.4813 0.6784 32 1 2.8118 -3.5114 1.0161 33 1 5.4286 -3.1969 2.3373 34 1 1.8338 -3.5605 2.9687 35 1 2.1198 -4.3111 4.5568 36 1 2.6333 -2.6327 4.2603 37 1 4.4037 -4.8270 5.2992 38 1 5.0270 -3.2061 4.9091 39 1 6.6056 -4.2056 3.2789 40 1 5.9823 -5.8266 3.6691 41 1 9.6358 -6.2503 3.7548 42 1 4.9740 -3.9996 -1.5112 43 1 4.7492 -2.3108 -2.2173 44 1 6.3066 -1.3656 -0.4519 45 1 6.5311 -3.0546 0.2541 46 1 1.6966 -2.1373 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:50 Heat of formation + Delta-G solvation = 36.135332 kcal Electronic energy + Delta-G solvation = -22786.478744 eV Core-core repulsion = 19675.752964 eV Total energy + Delta-G solvation = -3110.725780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48935 -38.05857 -36.32709 -33.88726 -33.08772 -31.16184 -30.90343 -29.11195 -27.98360 -25.81784 -24.72132 -23.77454 -22.37307 -22.04002 -21.28389 -19.53239 -19.05863 -16.78063 -16.39170 -16.27871 -15.73546 -15.18407 -14.83622 -14.59431 -14.45711 -14.21466 -13.97740 -13.18413 -12.98526 -12.80342 -12.72581 -12.52582 -12.38590 -12.25161 -12.11781 -11.66813 -11.45407 -11.28211 -11.22866 -11.01456 -10.87704 -10.46888 -10.44552 -10.16835 -10.07875 -9.72701 -9.48840 -9.31542 -9.24623 -9.01094 -8.77513 -8.33702 -7.88939 -5.98843 -4.00552 1.14107 1.26530 3.33267 3.39572 3.43516 3.62241 3.93668 4.28255 4.47708 4.53728 4.63292 4.64376 4.97047 5.02754 5.06505 5.14130 5.27450 5.29412 5.32830 5.37349 5.46518 5.54048 5.65722 5.71232 5.75939 5.76553 5.87965 5.89142 5.96020 6.04291 6.12076 6.20742 6.23263 6.28897 6.38789 6.41486 6.54214 6.57894 6.74916 6.94513 7.11616 7.56780 7.64602 7.83009 7.96349 8.02647 8.10286 8.44699 9.05918 9.63478 11.12405 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.003518 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.816568 B = 7958.116041 C = 8419.169851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 C -0.188 4.188 4 C 0.105 3.895 5 N -0.481 5.481 6 C 0.197 3.803 7 C -0.085 4.085 8 C 0.101 3.899 9 N -0.682 5.682 10 C 0.083 3.917 11 H 0.036 0.964 12 C -0.134 4.134 13 C -0.114 4.114 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.162 4.162 24 C -0.146 4.146 25 C -0.164 4.164 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.354 0.646 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.778 10.611 -11.402 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.208 4.208 4 C -0.052 4.052 5 N -0.190 5.190 6 C 0.059 3.941 7 C -0.086 4.086 8 C -0.029 4.029 9 N -0.317 5.317 10 C -0.026 4.026 11 H 0.054 0.946 12 C -0.193 4.193 13 C -0.152 4.152 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.200 4.200 24 C -0.183 4.183 25 C -0.183 4.183 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.193 11.023 -11.349 21.935 hybrid contribution 0.277 -0.829 0.599 1.060 sum -14.916 10.194 -10.750 21.023 Atomic orbital electron populations 1.20804 0.90518 1.03255 1.02567 1.20265 0.96533 0.92994 0.95346 1.21946 0.95737 0.98383 1.04771 1.22677 0.91654 0.96003 0.94862 1.67389 1.41269 0.97901 1.12458 1.20051 0.90035 0.91796 0.92172 1.20009 0.96712 0.93345 0.98535 1.21418 0.99576 0.93557 0.88359 1.60494 1.14962 1.53022 1.03228 1.21578 0.94873 0.92783 0.93402 0.94578 1.21778 0.96356 1.01248 0.99868 1.21818 0.96829 1.00998 0.95536 1.19118 0.90507 0.95361 0.96606 1.21238 0.98422 1.40241 0.95763 0.92720 1.25017 0.98236 0.95471 0.95687 1.69952 1.19764 1.41733 1.22048 0.86608 0.80298 0.78379 0.82817 1.20756 1.21232 1.19859 1.23084 1.04068 1.01219 0.91664 1.22946 0.91187 1.03297 1.00875 1.21691 0.94803 0.98498 1.03344 0.90783 0.91057 0.91174 0.85299 0.83045 0.94556 0.91113 0.82390 0.93989 0.93104 0.92520 0.92818 0.92516 0.96634 0.97014 0.93060 0.88263 0.89076 0.87520 0.88110 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.06 36.00 0.36 -0.49 16 2 C -0.04 -0.46 5.92 -104.32 -0.62 -1.08 16 3 C -0.19 -1.94 9.82 -39.44 -0.39 -2.33 16 4 C 0.10 1.25 11.18 -17.55 -0.20 1.05 16 5 N -0.48 -7.03 9.36 -9.48 -0.09 -7.12 16 6 C 0.20 2.78 6.21 -82.59 -0.51 2.27 16 7 C -0.08 -1.19 2.09 -155.66 -0.33 -1.51 16 8 C 0.10 1.49 5.29 -3.83 -0.02 1.47 16 9 N -0.68 -11.85 6.28 -106.72 -0.67 -12.52 16 10 C 0.08 1.47 2.65 -67.71 -0.18 1.29 16 11 H 0.04 0.65 7.86 -51.93 -0.41 0.25 16 12 C -0.13 -2.03 9.41 37.16 0.35 -1.68 16 13 C -0.11 -2.39 4.74 -26.73 -0.13 -2.52 16 14 C 0.02 0.54 4.80 -27.88 -0.13 0.41 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.16 -2.00 9.88 -26.73 -0.26 -2.27 16 24 C -0.15 -2.11 9.37 -26.74 -0.25 -2.36 16 25 C -0.16 -2.00 8.98 -39.44 -0.35 -2.35 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 30 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.04 0.54 7.94 -51.93 -0.41 0.13 16 32 H 0.07 0.96 5.91 -51.93 -0.31 0.65 16 33 H 0.35 6.91 6.06 -39.29 -0.24 6.67 16 34 H 0.04 0.57 7.39 -51.93 -0.38 0.19 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.11 1.58 7.59 -51.92 -0.39 1.19 16 45 H 0.10 1.58 8.03 -51.93 -0.42 1.16 16 46 H 0.13 1.40 7.07 -52.49 -0.37 1.03 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -31.15 372.49 -10.37 -41.52 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.87 Total: 5.45 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -3.07 Total: -23.67 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.02 Total: -45.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.15 -10.37 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.652 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds