Wall clock time and date at job start Fri Apr 10 2020 19:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38678 * 120.78707 * 2 1 4 4 C 1.38179 * 119.16251 * 179.97438 * 3 2 1 5 5 N 1.31879 * 120.76730 * 0.02628 * 4 3 2 6 6 C 1.31856 * 121.72546 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.61938 * 179.97438 * 6 5 4 8 8 C 1.53002 * 115.55056 * 134.10618 * 7 6 5 9 9 N 1.46894 * 109.47624 * 279.59885 * 8 7 6 10 10 C 1.46899 * 111.00583 * 174.87080 * 9 8 7 11 11 H 1.09000 * 109.46953 * 34.99679 * 10 9 8 12 12 C 1.53002 * 109.47006 * 275.00042 * 10 9 8 13 13 C 1.53001 * 109.47434 * 154.99596 * 10 9 8 14 14 C 1.53002 * 109.46877 * 295.00181 * 13 10 9 15 15 C 1.50700 * 109.46740 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99944 * 179.72251 * 15 14 13 18 18 N 1.31514 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47280 * 90.00410 * 19 17 15 21 21 H 1.48505 * 109.46833 * 209.99942 * 19 17 15 22 22 H 1.48494 * 109.47341 * 329.99678 * 19 17 15 23 23 C 1.52997 * 117.52035 * 279.80875 * 7 6 5 24 24 C 1.52995 * 117.50144 * 348.43927 * 7 6 5 25 25 C 1.38226 * 120.76558 * 0.27095 * 6 5 4 26 26 H 1.09003 * 109.47407 * 89.99656 * 1 2 3 27 27 H 1.09006 * 109.46598 * 209.99699 * 1 2 3 28 28 H 1.08998 * 109.47275 * 329.98839 * 1 2 3 29 29 H 1.08005 * 120.41779 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.61722 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47429 * 159.59262 * 8 7 6 32 32 H 1.09004 * 109.46901 * 39.59905 * 8 7 6 33 33 H 1.00909 * 110.99256 * 298.82603 * 9 8 7 34 34 H 1.08995 * 109.47327 * 59.99689 * 12 10 9 35 35 H 1.08999 * 109.46738 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46306 * 299.99287 * 12 10 9 37 37 H 1.08993 * 109.47196 * 175.00208 * 13 10 9 38 38 H 1.08998 * 109.46616 * 55.00075 * 13 10 9 39 39 H 1.08993 * 109.47185 * 60.00021 * 14 13 10 40 40 H 1.08998 * 109.47412 * 299.99407 * 14 13 10 41 41 H 0.96993 * 120.00171 * 179.97438 * 18 17 15 42 42 H 1.09001 * 117.50229 * 214.96707 * 23 7 6 43 43 H 1.09000 * 117.50121 * 359.97438 * 23 7 6 44 44 H 1.09009 * 117.49700 * 359.97438 * 24 7 6 45 45 H 1.08999 * 117.50594 * 144.99384 * 24 7 6 46 46 H 1.07996 * 120.42370 * 179.70229 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 0.0005 5 7 4.2403 0.0003 0.0005 6 6 3.5984 -1.1514 0.0005 7 6 4.3801 -2.4398 -0.0001 8 6 3.9015 -3.5026 0.9910 9 7 4.4196 -3.1922 2.3301 10 6 3.8815 -4.1226 3.3315 11 1 3.7675 -5.1105 2.8854 12 6 2.5191 -3.6205 3.8141 13 6 4.8436 -4.2069 4.5183 14 6 6.1657 -4.8257 4.0599 15 6 7.1135 -4.9082 5.2287 16 1 6.8037 -4.5550 6.2011 17 6 8.3740 -5.4403 5.0578 18 7 8.7490 -5.8763 3.8751 19 14 9.5485 -5.5432 6.5067 20 1 9.3649 -6.8427 7.2015 21 1 10.9470 -5.4361 6.0188 22 1 9.2676 -4.4326 7.4516 23 6 4.9440 -2.9240 -1.3374 24 6 5.8832 -2.3540 -0.2726 25 6 2.2167 -1.1909 -0.0051 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.6966 2.1378 0.0004 30 1 4.1582 2.0755 0.0001 31 1 4.2656 -4.4813 0.6784 32 1 2.8118 -3.5114 1.0161 33 1 5.4286 -3.1969 2.3373 34 1 1.8338 -3.5605 2.9687 35 1 2.1198 -4.3111 4.5568 36 1 2.6333 -2.6327 4.2603 37 1 4.4037 -4.8270 5.2992 38 1 5.0270 -3.2061 4.9091 39 1 6.6056 -4.2056 3.2789 40 1 5.9823 -5.8266 3.6691 41 1 9.6358 -6.2503 3.7548 42 1 4.9740 -3.9996 -1.5112 43 1 4.7492 -2.3108 -2.2173 44 1 6.3066 -1.3656 -0.4519 45 1 6.5311 -3.0546 0.2541 46 1 1.6966 -2.1373 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:32:49 Heat of formation + Delta-G solvation = 18.942179 kcal Electronic energy + Delta-G solvation = -22787.224295 eV Core-core repulsion = 19675.752964 eV Total energy + Delta-G solvation = -3111.471331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41446 -39.24031 -37.70329 -35.18676 -34.66671 -32.71903 -31.91724 -30.72989 -28.70549 -27.31245 -26.36688 -24.70678 -23.54950 -23.06713 -22.95957 -21.04278 -20.13260 -18.56374 -17.65661 -17.29494 -16.75321 -16.60193 -16.50747 -15.94752 -15.63397 -15.30288 -14.89612 -14.54658 -14.39507 -14.23410 -13.70969 -13.62908 -13.45560 -13.37155 -13.23521 -13.07459 -13.02532 -12.84709 -12.59689 -12.41406 -12.34585 -12.13442 -11.85324 -11.62841 -11.41127 -11.31064 -11.16356 -10.93515 -10.55237 -10.32513 -10.23655 -9.70309 -9.27681 -8.20753 -6.31180 0.25524 0.42103 1.38324 1.39605 1.50806 2.39998 2.59687 2.95647 3.12098 3.28483 3.42609 3.67584 3.82691 3.92678 4.04657 4.09251 4.18279 4.24908 4.34031 4.34936 4.45560 4.49890 4.63343 4.71677 4.73828 4.77048 4.77670 4.82888 4.88553 4.98421 5.02668 5.03869 5.05694 5.07895 5.12889 5.21444 5.25864 5.30641 5.43536 5.48284 5.52526 5.69940 5.83427 5.90570 6.24091 6.27266 6.43251 6.84806 7.19767 7.37668 8.90547 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.003518 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.816568 B = 7958.116041 C = 8419.169851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.046 4.046 3 C -0.184 4.184 4 C 0.088 3.912 5 N -0.517 5.517 6 C 0.173 3.827 7 C -0.085 4.085 8 C 0.103 3.897 9 N -0.686 5.686 10 C 0.088 3.912 11 H 0.032 0.968 12 C -0.125 4.125 13 C -0.101 4.101 14 C 0.029 3.971 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.265 1.265 23 C -0.140 4.140 24 C -0.163 4.163 25 C -0.174 4.174 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.171 0.829 31 H 0.031 0.969 32 H 0.089 0.911 33 H 0.337 0.663 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.049 0.951 39 H -0.004 1.004 40 H -0.014 1.014 41 H 0.263 0.737 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.858 11.499 -11.129 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.054 4.054 3 C -0.203 4.203 4 C -0.068 4.068 5 N -0.226 5.226 6 C 0.036 3.964 7 C -0.086 4.086 8 C -0.026 4.026 9 N -0.319 5.319 10 C -0.022 4.022 11 H 0.050 0.950 12 C -0.183 4.183 13 C -0.139 4.139 14 C -0.008 4.008 15 C -0.582 4.582 16 H 0.075 0.925 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.177 4.177 24 C -0.200 4.200 25 C -0.193 4.193 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.178 0.822 30 H 0.188 0.812 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.015 0.985 40 H 0.004 0.996 41 H 0.072 0.928 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.301 11.913 -11.076 23.747 hybrid contribution 0.911 -1.057 0.476 1.475 sum -16.390 10.856 -10.600 22.334 Atomic orbital electron populations 1.20869 0.87996 1.04205 1.03771 1.20697 0.98334 0.92424 0.93924 1.22301 0.95158 0.99763 1.03088 1.23120 0.92939 0.95911 0.94873 1.67326 1.42619 0.98861 1.13837 1.20090 0.90933 0.91475 0.93890 1.20003 0.95808 0.93735 0.99067 1.21465 1.00405 0.93564 0.87177 1.60595 1.13706 1.52910 1.04677 1.21528 0.95481 0.93027 0.92160 0.95039 1.21685 0.94666 1.01031 1.00871 1.21635 0.95284 0.99953 0.97034 1.18975 0.92595 0.93832 0.95386 1.21680 0.99458 1.40450 0.96573 0.92536 1.25938 1.00124 0.94925 0.98638 1.70081 1.20365 1.42344 1.24207 0.85491 0.77768 0.78844 0.79224 1.19717 1.20712 1.18955 1.23120 1.01507 1.01886 0.91236 1.22782 0.91749 1.02604 1.02899 1.21865 0.94124 0.99835 1.03503 0.89308 0.90617 0.89749 0.82217 0.81218 0.95122 0.89325 0.84368 0.92048 0.91732 0.93069 0.92329 0.93227 0.98538 0.99602 0.92835 0.87171 0.87968 0.88383 0.90230 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.06 71.24 0.72 -0.55 16 2 C -0.05 -0.86 5.92 -19.67 -0.12 -0.97 16 3 C -0.18 -3.34 9.82 22.36 0.22 -3.12 16 4 C 0.09 2.01 11.18 84.67 0.95 2.96 16 5 N -0.52 -15.17 9.36 -183.89 -1.72 -16.89 16 6 C 0.17 4.84 6.21 42.55 0.26 5.10 16 7 C -0.08 -2.41 2.09 -52.93 -0.11 -2.52 16 8 C 0.10 3.05 5.29 86.30 0.46 3.50 16 9 N -0.69 -24.30 6.28 -491.56 -3.09 -27.39 16 10 C 0.09 3.08 2.65 44.92 0.12 3.20 16 11 H 0.03 1.14 7.86 -2.39 -0.02 1.12 16 12 C -0.12 -3.52 9.41 71.98 0.68 -2.85 16 13 C -0.10 -4.32 4.74 30.60 0.15 -4.17 16 14 C 0.03 1.56 4.80 29.85 0.14 1.71 16 15 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.00 0.10 5.46 84.66 0.46 0.56 16 18 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 19 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 C -0.14 -3.45 9.88 30.59 0.30 -3.15 16 24 C -0.16 -5.01 9.37 30.59 0.29 -4.72 16 25 C -0.17 -3.98 8.98 22.36 0.20 -3.77 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.81 8.10 -2.38 -0.02 0.79 16 28 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.03 0.93 7.94 -2.38 -0.02 0.91 16 32 H 0.09 2.28 5.91 -2.39 -0.01 2.26 16 33 H 0.34 13.91 6.06 -89.69 -0.54 13.37 16 34 H 0.06 1.50 7.39 -2.39 -0.02 1.48 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.00 -0.20 6.43 -2.39 -0.02 -0.22 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.11 2.46 8.08 -2.39 -0.02 2.44 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.10 3.14 7.59 -2.38 -0.02 3.12 16 45 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 46 H 0.14 2.76 7.07 -2.91 -0.02 2.74 16 Total: -1.00 -68.46 372.49 2.85 -65.61 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.40 Total: 28.54 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.95 Total: -40.25 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -4.52 Total: -101.13 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.46 2.85 -65.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.551 kcal (2) G-P(sol) polarization free energy of solvation -68.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds