Wall clock time and date at job start Fri Apr 10 2020 19:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38231 * 119.61852 * 2 1 4 4 C 1.38632 * 119.15863 * 180.02562 * 3 2 1 5 5 C 1.38667 * 118.42209 * 359.97438 * 4 3 2 6 6 C 1.38182 * 119.16354 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.61793 * 179.97438 * 6 5 4 8 8 C 1.53004 * 115.54751 * 313.97329 * 7 6 5 9 9 N 1.46905 * 109.47359 * 299.91275 * 8 7 6 10 10 C 1.46894 * 111.00097 * 174.33688 * 9 8 7 11 11 H 1.09001 * 109.47186 * 35.00439 * 10 9 8 12 12 C 1.52993 * 109.47195 * 275.00054 * 10 9 8 13 13 C 1.53003 * 109.46879 * 155.00155 * 10 9 8 14 14 C 1.52998 * 109.47065 * 295.00045 * 13 10 9 15 15 C 1.50699 * 109.47253 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99944 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00323 * 179.72536 * 15 14 13 18 18 N 1.31519 * 119.99862 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00270 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46842 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46777 * 119.99630 * 19 17 15 22 22 H 1.48495 * 109.47511 * 239.99968 * 19 17 15 23 23 C 1.53005 * 117.50320 * 99.64469 * 7 6 5 24 24 C 1.53006 * 117.50052 * 168.30665 * 7 6 5 25 25 N 1.31857 * 119.61798 * 180.28777 * 2 1 3 26 26 H 1.09003 * 109.46729 * 89.99842 * 1 2 3 27 27 H 1.08995 * 109.47550 * 210.00194 * 1 2 3 28 28 H 1.08998 * 109.47250 * 330.00731 * 1 2 3 29 29 H 1.07996 * 120.41823 * 0.03935 * 3 2 1 30 30 H 1.07999 * 120.78880 * 179.97438 * 4 3 2 31 31 H 1.07997 * 120.42109 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47032 * 179.91203 * 8 7 6 33 33 H 1.08993 * 109.47112 * 59.91320 * 8 7 6 34 34 H 1.00900 * 110.99697 * 298.29659 * 9 8 7 35 35 H 1.09005 * 109.47407 * 180.02562 * 12 10 9 36 36 H 1.08994 * 109.47541 * 299.99982 * 12 10 9 37 37 H 1.09002 * 109.47288 * 60.00348 * 12 10 9 38 38 H 1.08999 * 109.47041 * 175.00208 * 13 10 9 39 39 H 1.08994 * 109.47428 * 54.99967 * 13 10 9 40 40 H 1.08999 * 109.47057 * 60.00173 * 14 13 10 41 41 H 1.09007 * 109.47266 * 300.00067 * 14 13 10 42 42 H 0.97003 * 119.99870 * 179.97438 * 18 17 15 43 43 H 1.09001 * 117.49598 * 215.00582 * 23 7 6 44 44 H 1.08991 * 117.49536 * 0.02562 * 23 7 6 45 45 H 1.08994 * 117.49463 * 359.97280 * 24 7 6 46 46 H 1.08998 * 117.49742 * 144.97133 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0005 6 6 3.4766 -1.1948 -0.0005 7 6 4.1726 -2.5314 -0.0011 8 6 5.3271 -2.6737 -0.9950 9 7 4.8256 -2.4699 -2.3606 10 6 5.9282 -2.4659 -3.3313 11 1 6.6949 -3.1722 -3.0130 12 6 6.5304 -1.0619 -3.4132 13 6 5.3979 -2.8745 -4.7071 14 6 4.9091 -4.3234 -4.6555 15 6 4.3874 -4.7260 -6.0108 16 1 4.4025 -4.0190 -6.8271 17 6 3.8955 -5.9986 -6.2100 18 7 3.8821 -6.8612 -5.2173 19 14 3.2481 -6.4974 -7.8897 20 1 3.3738 -5.3535 -8.8283 21 1 4.0363 -7.6468 -8.4025 22 1 1.8203 -6.8887 -7.7738 23 6 4.2978 -3.2634 1.3367 24 6 3.3203 -3.7719 0.2740 25 7 2.1586 -1.1463 -0.0058 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6508 2.1373 0.0006 30 1 4.1367 2.1139 -0.0010 31 1 5.3056 -0.0806 -0.0005 32 1 5.7577 -3.6716 -0.9112 33 1 6.0911 -1.9286 -0.7735 34 1 4.1355 -3.1659 -2.6000 35 1 7.3483 -1.0588 -4.1338 36 1 5.7637 -0.3556 -3.7315 37 1 6.9083 -0.7708 -2.4331 38 1 6.1954 -2.7861 -5.4448 39 1 4.5708 -2.2218 -4.9862 40 1 4.1116 -4.4118 -3.9179 41 1 5.7362 -4.9762 -4.3764 42 1 3.5357 -7.7564 -5.3574 43 1 5.2027 -3.8463 1.5086 44 1 3.8763 -2.7784 2.2170 45 1 2.2562 -3.6212 0.4559 46 1 3.5818 -4.6893 -0.2533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:33:00 Heat of formation + Delta-G solvation = 37.302673 kcal Electronic energy + Delta-G solvation = -22916.631748 eV Core-core repulsion = 19805.956588 eV Total energy + Delta-G solvation = -3110.675160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42440 -38.02432 -36.36614 -33.13262 -32.88548 -31.89946 -31.07387 -29.13053 -27.76454 -25.70788 -24.72134 -23.60976 -22.52507 -21.75400 -21.32104 -19.63143 -19.22325 -16.77280 -16.29570 -16.17285 -15.69334 -15.21333 -14.74918 -14.48778 -14.46110 -14.05442 -13.89578 -13.14914 -13.00010 -12.57692 -12.54104 -12.42393 -12.29922 -12.27443 -12.11085 -11.72779 -11.41286 -11.32949 -11.23657 -11.02228 -10.90215 -10.50320 -10.44858 -10.14946 -10.04609 -9.73165 -9.64773 -9.24669 -9.23803 -8.99644 -8.58029 -8.33935 -7.90641 -5.98808 -4.00505 1.20559 1.39000 3.32237 3.39722 3.44150 3.63586 3.95659 4.26471 4.47697 4.57092 4.65266 4.75384 5.00227 5.09640 5.12169 5.25679 5.30809 5.37437 5.43152 5.53385 5.56662 5.60412 5.65476 5.70914 5.71720 5.87120 5.87787 5.96653 5.97697 6.07945 6.15627 6.20126 6.26041 6.32845 6.37747 6.39224 6.53473 6.57585 6.82168 6.94179 7.11613 7.56468 7.64972 7.83117 7.95924 8.02632 8.17963 8.44801 9.06244 9.63627 11.12484 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.003870 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.898208 B = 7232.550474 C = 7498.629209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 C -0.186 4.186 4 C -0.073 4.073 5 C -0.159 4.159 6 C 0.202 3.798 7 C -0.084 4.084 8 C 0.102 3.898 9 N -0.682 5.682 10 C 0.083 3.917 11 H 0.036 0.964 12 C -0.134 4.134 13 C -0.114 4.114 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.162 4.162 24 C -0.150 4.150 25 N -0.479 5.479 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.354 0.646 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.259 0.741 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 14.517 14.650 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.206 4.206 4 C -0.099 4.099 5 C -0.179 4.179 6 C 0.064 3.936 7 C -0.085 4.085 8 C -0.028 4.028 9 N -0.317 5.317 10 C -0.026 4.026 11 H 0.054 0.946 12 C -0.192 4.192 13 C -0.151 4.151 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.200 4.200 24 C -0.187 4.187 25 N -0.189 5.189 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.125 0.875 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.797 14.257 14.718 20.506 hybrid contribution 0.408 -0.456 -1.032 1.200 sum -0.389 13.801 13.686 19.440 Atomic orbital electron populations 1.20689 0.89184 1.02991 1.03121 1.21196 0.96772 0.88251 0.94710 1.21836 0.94972 0.99008 1.04759 1.21477 0.94409 0.98055 0.95991 1.21713 1.01189 0.92616 1.02407 1.19903 0.88471 0.93034 0.92184 1.20054 0.99969 0.90003 0.98496 1.21392 0.93610 0.99393 0.88420 1.60486 1.14684 1.56256 1.00240 1.21570 0.92050 0.95407 0.93575 0.94564 1.21778 0.99898 0.97445 1.00116 1.21812 0.99926 1.00131 0.93271 1.19123 0.95871 0.89537 0.97097 1.21272 1.40497 0.97410 0.96413 0.92690 1.25015 0.95973 0.96693 0.96719 1.69971 1.46847 1.05566 1.31101 0.86560 0.78605 0.78474 0.84524 1.19755 1.21080 1.21000 1.23036 1.02201 1.02989 0.91770 1.23014 0.98135 0.96460 1.01089 1.67195 1.09549 1.29252 1.12877 0.90392 0.90632 0.91110 0.85397 0.85274 0.85325 0.94528 0.91158 0.82360 0.93121 0.92539 0.93937 0.92838 0.92591 0.96611 0.97013 0.93123 0.88344 0.89034 0.87543 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.17 36.00 0.37 -0.65 16 2 C 0.13 1.66 6.78 -82.59 -0.56 1.10 16 3 C -0.19 -2.08 9.75 -39.44 -0.38 -2.46 16 4 C -0.07 -0.82 10.18 -39.28 -0.40 -1.22 16 5 C -0.16 -2.03 9.40 -39.44 -0.37 -2.40 16 6 C 0.20 2.92 6.02 -82.59 -0.50 2.42 16 7 C -0.08 -1.17 2.13 -155.65 -0.33 -1.50 16 8 C 0.10 1.48 4.97 -3.82 -0.02 1.46 16 9 N -0.68 -11.75 6.09 -106.73 -0.65 -12.40 16 10 C 0.08 1.46 2.64 -67.72 -0.18 1.28 16 11 H 0.04 0.65 7.86 -51.93 -0.41 0.25 16 12 C -0.13 -1.99 9.41 37.15 0.35 -1.64 16 13 C -0.11 -2.39 4.74 -26.73 -0.13 -2.51 16 14 C 0.02 0.54 4.80 -27.88 -0.13 0.40 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C -0.16 -1.92 9.95 -26.69 -0.27 -2.18 16 24 C -0.15 -2.11 9.73 -26.69 -0.26 -2.37 16 25 N -0.48 -7.25 9.28 -5.74 -0.05 -7.30 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.46 7.23 -52.49 -0.38 1.08 16 32 H 0.04 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.07 0.93 6.48 -51.93 -0.34 0.59 16 34 H 0.35 7.03 6.53 -39.29 -0.26 6.77 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.56 7.38 -51.93 -0.38 0.18 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.43 6.43 -51.93 -0.33 0.09 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.11 1.56 7.59 -51.93 -0.39 1.16 16 46 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -31.16 374.01 -10.52 -41.68 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.95 Total: 5.57 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -3.22 Total: -23.85 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.03 Total: -45.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.16 -10.52 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.979 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds