Wall clock time and date at job start Fri Apr 10 2020 19:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.08999 * 109.47120 * 55.00165 * 3 2 1 5 5 C 1.50698 * 109.47193 * 174.99847 * 3 2 1 6 6 H 1.08003 * 120.00167 * 120.00441 * 5 3 2 7 7 C 1.37874 * 120.00200 * 300.00291 * 5 3 2 8 8 N 1.31518 * 120.00086 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00083 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46924 * 90.00136 * 9 7 5 11 11 H 1.48496 * 109.47325 * 210.00238 * 9 7 5 12 12 H 1.48503 * 109.46813 * 330.00375 * 9 7 5 13 13 N 1.46896 * 109.47110 * 295.00191 * 3 2 1 14 14 C 1.46962 * 110.99887 * 174.99859 * 13 3 2 15 15 C 1.53052 * 109.36316 * 183.18629 * 14 13 3 16 16 N 1.46955 * 109.36508 * 301.59915 * 15 14 13 17 17 C 1.39675 * 111.00209 * 183.18754 * 16 15 14 18 18 C 1.38933 * 120.07099 * 0.02562 * 17 16 15 19 19 C 1.38090 * 119.92528 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06979 * 359.97438 * 19 18 17 21 21 C 1.38261 * 120.15700 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.96746 * 179.97438 * 21 20 19 23 23 C 1.38134 * 120.06956 * 359.70144 * 21 20 19 24 24 C 1.46962 * 110.88107 * 59.32139 * 16 15 14 25 25 C 1.46955 * 110.99889 * 298.79737 * 13 3 2 26 26 H 1.09000 * 109.47497 * 299.99963 * 1 2 3 27 27 H 1.09006 * 109.47474 * 60.00021 * 1 2 3 28 28 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47497 * 240.00037 * 2 1 3 30 30 H 1.08996 * 109.47510 * 119.99993 * 2 1 3 31 31 H 0.97000 * 120.00075 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.48769 * 63.22147 * 14 13 3 33 33 H 1.08995 * 109.50591 * 303.16541 * 14 13 3 34 34 H 1.08994 * 109.49124 * 181.63263 * 15 14 13 35 35 H 1.09002 * 109.50935 * 61.57590 * 15 14 13 36 36 H 1.07994 * 120.04089 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.95938 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.91900 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46721 * 90.00239 * 22 21 20 40 40 H 1.08999 * 109.47038 * 209.99982 * 22 21 20 41 41 H 1.09001 * 109.46931 * 330.00409 * 22 21 20 42 42 H 1.08001 * 120.03469 * 180.27936 * 23 21 20 43 43 H 1.08997 * 109.48769 * 60.64458 * 24 16 15 44 44 H 1.08999 * 109.48572 * 180.70865 * 24 16 15 45 45 H 1.09003 * 109.48843 * 296.77806 * 25 13 3 46 46 H 1.08995 * 109.49317 * 56.82527 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7940 0.2359 3.8755 12 1 1.7880 0.8093 2.6394 13 7 1.6513 2.0993 -1.2552 14 6 2.0209 3.5216 -1.2417 15 6 1.5293 4.1858 -2.5300 16 7 2.1218 3.5016 -3.6877 17 6 1.7523 4.1261 -4.8812 18 6 0.9273 5.2436 -4.8558 19 6 0.5643 5.8589 -6.0376 20 6 1.0216 5.3641 -7.2454 21 6 1.8428 4.2522 -7.2744 22 6 2.3381 3.7164 -8.5929 23 6 2.2143 3.6353 -6.0956 24 6 1.7522 2.0793 -3.7012 25 6 2.2438 1.4151 -2.4129 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.8770 0.4825 2.1132 32 1 3.1048 3.6150 -1.1751 33 1 1.5604 4.0092 -0.3825 34 1 1.8276 5.2341 -2.5353 35 1 0.4428 4.1166 -2.5836 36 1 0.5702 5.6307 -3.9130 37 1 -0.0774 6.7274 -6.0185 38 1 0.7365 5.8475 -8.1682 39 1 3.2835 4.1955 -8.8477 40 1 2.4861 2.6393 -8.5148 41 1 1.6031 3.9269 -9.3698 42 1 2.8595 2.7695 -6.1186 43 1 0.6683 1.9859 -3.7678 44 1 2.2131 1.5920 -4.5604 45 1 3.3303 1.4846 -2.3596 46 1 1.9458 0.3666 -2.4075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:38 Heat of formation + Delta-G solvation = 43.217202 kcal Electronic energy + Delta-G solvation = -23557.284336 eV Core-core repulsion = 20446.865649 eV Total energy + Delta-G solvation = -3110.418687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21124 -38.30625 -36.08864 -33.00430 -32.33331 -31.88573 -30.50877 -29.69380 -27.38680 -26.84870 -25.11864 -23.55075 -22.55721 -21.51513 -21.11896 -19.84685 -18.96580 -17.14050 -16.67425 -15.83249 -15.56826 -15.13879 -14.57075 -14.38725 -14.26203 -13.80165 -13.73204 -13.69498 -13.28670 -13.10649 -12.74536 -12.54633 -12.27612 -12.09598 -11.98256 -11.80661 -11.50299 -11.34237 -11.13762 -11.10224 -10.84302 -10.75855 -10.51536 -10.19898 -10.08018 -9.64831 -9.59548 -9.43310 -9.24237 -8.67565 -8.58291 -7.64147 -7.21901 -6.12902 -4.13962 1.41997 1.48340 3.23798 3.35231 3.36952 3.71090 4.05323 4.35551 4.79169 4.84342 4.87491 5.12471 5.17381 5.21451 5.33517 5.42197 5.45035 5.50340 5.51048 5.66896 5.74006 5.77818 5.82957 5.92101 5.93289 5.99181 6.00468 6.08472 6.17491 6.18210 6.39635 6.43414 6.50048 6.63100 6.64847 6.67723 6.74801 6.77908 6.87142 6.91012 7.06254 7.17967 7.26240 7.48552 7.54240 8.03555 8.07211 8.43058 8.90128 9.50094 10.99775 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003826 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.358361 B = 7317.361466 C = 7448.401366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.182 3.818 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.527 5.527 14 C 0.060 3.940 15 C 0.057 3.943 16 N -0.488 5.488 17 C 0.129 3.871 18 C -0.181 4.181 19 C -0.091 4.091 20 C -0.158 4.158 21 C -0.065 4.065 22 C -0.113 4.113 23 C -0.145 4.145 24 C 0.065 3.935 25 C 0.056 3.944 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.123 0.877 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 5.760 -14.365 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.251 5.251 14 C -0.068 4.068 15 C -0.070 4.070 16 N -0.202 5.202 17 C 0.030 3.970 18 C -0.202 4.202 19 C -0.110 4.110 20 C -0.177 4.177 21 C -0.065 4.065 22 C -0.170 4.170 23 C -0.166 4.166 24 C -0.060 4.060 25 C -0.073 4.073 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.141 0.859 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.906 5.641 -14.151 18.172 hybrid contribution -0.133 -0.411 0.928 1.024 sum -10.039 5.230 -13.223 17.407 Atomic orbital electron populations 1.21734 0.97385 0.99364 1.01598 1.21954 0.94009 0.99352 1.00728 1.19700 0.94663 0.90459 0.87765 0.94328 1.21619 0.90542 1.39017 1.07183 0.90406 1.24980 0.94697 0.95329 0.97817 1.69920 1.08840 1.44980 1.29685 0.86869 0.80700 0.79818 0.80926 1.20562 1.22623 1.18902 1.62582 1.57508 1.01457 1.03553 1.21982 1.00392 0.89763 0.94699 1.22401 0.97224 0.97688 0.89689 1.59151 1.56084 1.04055 1.00923 1.19091 0.92730 0.94771 0.90430 1.21325 1.00562 0.99334 0.98945 1.20936 0.98843 0.98942 0.92262 1.20849 1.01347 0.97844 0.97695 1.19733 0.96725 0.95211 0.94863 1.20781 1.01160 1.01154 0.93875 1.20670 1.02911 1.02414 0.90596 1.22367 0.98860 0.85326 0.99452 1.22085 0.99244 0.97518 0.88419 0.93924 0.92089 0.94779 0.92219 0.93446 0.92665 0.92653 0.90954 0.90505 0.93454 0.85633 0.86420 0.86669 0.91223 0.91576 0.91737 0.85894 0.93773 0.90614 0.92486 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.80 37.15 0.36 -2.18 16 2 C -0.12 -2.58 4.73 -26.73 -0.13 -2.71 16 3 C 0.18 4.10 1.34 -68.87 -0.09 4.01 16 4 H 0.04 0.92 7.17 -51.93 -0.37 0.55 16 5 C -0.55 -14.58 7.71 -34.44 -0.27 -14.85 16 6 H 0.08 2.30 6.05 -52.48 -0.32 1.98 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.89 21.58 24.41 -169.99 -4.15 17.43 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.26 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 13 N -0.53 -10.30 4.15 -227.88 -0.95 -11.24 16 14 C 0.06 1.12 5.32 -3.76 -0.02 1.10 16 15 C 0.06 0.88 4.30 -3.77 -0.02 0.87 16 16 N -0.49 -7.79 4.75 -170.96 -0.81 -8.61 16 17 C 0.13 1.87 5.63 -83.79 -0.47 1.40 16 18 C -0.18 -2.37 8.82 -39.38 -0.35 -2.72 16 19 C -0.09 -1.05 10.04 -39.61 -0.40 -1.44 16 20 C -0.16 -1.76 9.70 -39.55 -0.38 -2.14 16 21 C -0.06 -0.75 5.88 -104.65 -0.62 -1.37 16 22 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 23 C -0.15 -1.95 8.85 -39.38 -0.35 -2.30 16 24 C 0.07 1.02 5.38 -3.76 -0.02 1.00 16 25 C 0.06 1.04 4.96 -3.77 -0.02 1.02 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.04 7.75 -51.93 -0.40 0.63 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.23 6.11 -51.93 -0.32 0.91 16 30 H 0.05 1.07 3.22 -51.93 -0.17 0.90 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.19 6.88 -51.93 -0.36 0.84 16 33 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 34 H 0.08 1.09 7.17 -51.93 -0.37 0.72 16 35 H 0.05 0.71 7.58 -51.93 -0.39 0.31 16 36 H 0.13 1.53 5.81 -52.49 -0.31 1.23 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.12 1.59 7.20 -52.49 -0.38 1.21 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.08 6.83 -51.93 -0.35 0.72 16 45 H 0.06 1.24 6.51 -51.93 -0.34 0.90 16 46 H 0.08 1.41 6.07 -51.93 -0.32 1.09 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -29.25 341.28 -9.86 -39.11 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.37 Total: 3.30 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.50 Total: -18.95 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.99 Total: -46.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.25 -9.86 -39.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.329 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds