Wall clock time and date at job start Fri Apr 10 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 H 1.08999 * 109.47120 * 55.00165 * 3 2 1 5 5 C 1.50698 * 109.47193 * 174.99847 * 3 2 1 6 6 H 1.08003 * 120.00167 * 120.00441 * 5 3 2 7 7 C 1.37874 * 120.00200 * 300.00291 * 5 3 2 8 8 N 1.31518 * 120.00086 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00083 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46924 * 90.00136 * 9 7 5 11 11 H 1.48496 * 109.47325 * 210.00238 * 9 7 5 12 12 H 1.48503 * 109.46813 * 330.00375 * 9 7 5 13 13 N 1.46896 * 109.47110 * 295.00191 * 3 2 1 14 14 C 1.46962 * 110.99887 * 174.99859 * 13 3 2 15 15 C 1.53052 * 109.36316 * 183.18629 * 14 13 3 16 16 N 1.46955 * 109.36508 * 301.59915 * 15 14 13 17 17 C 1.39675 * 111.00209 * 183.18754 * 16 15 14 18 18 C 1.38933 * 120.07099 * 0.02562 * 17 16 15 19 19 C 1.38090 * 119.92528 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06979 * 359.97438 * 19 18 17 21 21 C 1.38261 * 120.15700 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.96746 * 179.97438 * 21 20 19 23 23 C 1.38134 * 120.06956 * 359.70144 * 21 20 19 24 24 C 1.46962 * 110.88107 * 59.32139 * 16 15 14 25 25 C 1.46955 * 110.99889 * 298.79737 * 13 3 2 26 26 H 1.09000 * 109.47497 * 299.99963 * 1 2 3 27 27 H 1.09006 * 109.47474 * 60.00021 * 1 2 3 28 28 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47497 * 240.00037 * 2 1 3 30 30 H 1.08996 * 109.47510 * 119.99993 * 2 1 3 31 31 H 0.97000 * 120.00075 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.48769 * 63.22147 * 14 13 3 33 33 H 1.08995 * 109.50591 * 303.16541 * 14 13 3 34 34 H 1.08994 * 109.49124 * 181.63263 * 15 14 13 35 35 H 1.09002 * 109.50935 * 61.57590 * 15 14 13 36 36 H 1.07994 * 120.04089 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.95938 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.91900 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.46721 * 90.00239 * 22 21 20 40 40 H 1.08999 * 109.47038 * 209.99982 * 22 21 20 41 41 H 1.09001 * 109.46931 * 330.00409 * 22 21 20 42 42 H 1.08001 * 120.03469 * 180.27936 * 23 21 20 43 43 H 1.08997 * 109.48769 * 60.64458 * 24 16 15 44 44 H 1.08999 * 109.48572 * 180.70865 * 24 16 15 45 45 H 1.09003 * 109.48843 * 296.77806 * 25 13 3 46 46 H 1.08995 * 109.49317 * 56.82527 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 5.4539 0.8804 1.3363 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7940 0.2359 3.8755 12 1 1.7880 0.8093 2.6394 13 7 1.6513 2.0993 -1.2552 14 6 2.0209 3.5216 -1.2417 15 6 1.5293 4.1858 -2.5300 16 7 2.1218 3.5016 -3.6877 17 6 1.7523 4.1261 -4.8812 18 6 0.9273 5.2436 -4.8558 19 6 0.5643 5.8589 -6.0376 20 6 1.0216 5.3641 -7.2454 21 6 1.8428 4.2522 -7.2744 22 6 2.3381 3.7164 -8.5929 23 6 2.2143 3.6353 -6.0956 24 6 1.7522 2.0793 -3.7012 25 6 2.2438 1.4151 -2.4129 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.8770 0.4825 2.1132 32 1 3.1048 3.6150 -1.1751 33 1 1.5604 4.0092 -0.3825 34 1 1.8276 5.2341 -2.5353 35 1 0.4428 4.1166 -2.5836 36 1 0.5702 5.6307 -3.9130 37 1 -0.0774 6.7274 -6.0185 38 1 0.7365 5.8475 -8.1682 39 1 3.2835 4.1955 -8.8477 40 1 2.4861 2.6393 -8.5148 41 1 1.6031 3.9269 -9.3698 42 1 2.8595 2.7695 -6.1186 43 1 0.6683 1.9859 -3.7678 44 1 2.2131 1.5920 -4.5604 45 1 3.3303 1.4846 -2.3596 46 1 1.9458 0.3666 -2.4075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:37 Heat of formation + Delta-G solvation = 24.950545 kcal Electronic energy + Delta-G solvation = -23558.076437 eV Core-core repulsion = 20446.865649 eV Total energy + Delta-G solvation = -3111.210789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36940 -39.63054 -37.47404 -34.63100 -33.76772 -33.30723 -31.85875 -30.87469 -29.05616 -27.73860 -26.66234 -24.86708 -24.23097 -22.59871 -22.37081 -21.29903 -20.53839 -18.63636 -18.25758 -17.27912 -16.68597 -16.45984 -16.04808 -15.86083 -15.69031 -15.20172 -14.98073 -14.76429 -14.56977 -14.36939 -14.13642 -13.98834 -13.68628 -13.58893 -13.07307 -13.04069 -12.90826 -12.64264 -12.52948 -12.32813 -12.32024 -12.12178 -12.01741 -11.78924 -11.63720 -11.43551 -11.29716 -11.12653 -10.68861 -10.54660 -9.58932 -8.98734 -8.71131 -8.31635 -6.36189 0.49042 0.52928 1.29263 1.34781 1.45186 2.29943 2.67573 2.98425 3.03580 3.21890 3.86565 3.94317 4.05848 4.12953 4.22030 4.27850 4.33823 4.39546 4.43445 4.49421 4.54121 4.55055 4.61818 4.64006 4.65972 4.78970 4.86264 4.89564 4.97545 4.99316 5.07987 5.11476 5.16978 5.18272 5.24943 5.29776 5.40733 5.44500 5.50996 5.57614 5.59889 5.74114 5.93884 6.07617 6.13767 6.33998 6.41556 6.45090 6.72440 7.31784 8.84976 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003826 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.358361 B = 7317.361466 C = 7448.401366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.537 4.537 6 H 0.032 0.968 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.244 1.244 13 N -0.514 5.514 14 C 0.061 3.939 15 C 0.070 3.930 16 N -0.507 5.507 17 C 0.106 3.894 18 C -0.191 4.191 19 C -0.092 4.092 20 C -0.157 4.157 21 C -0.069 4.069 22 C -0.112 4.112 23 C -0.162 4.162 24 C 0.077 3.923 25 C 0.062 3.938 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.013 0.987 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.014 0.986 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 6.159 -15.848 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.077 3.923 4 H 0.051 0.949 5 C -0.576 4.576 6 H 0.051 0.949 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.167 1.167 13 N -0.237 5.237 14 C -0.068 4.068 15 C -0.057 4.057 16 N -0.222 5.222 17 C 0.008 3.992 18 C -0.212 4.212 19 C -0.110 4.110 20 C -0.176 4.176 21 C -0.070 4.070 22 C -0.168 4.168 23 C -0.182 4.182 24 C -0.048 4.048 25 C -0.067 4.067 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.032 0.968 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.131 6.053 -15.667 21.320 hybrid contribution 0.926 -0.435 1.232 1.601 sum -12.205 5.619 -14.435 19.721 Atomic orbital electron populations 1.21641 0.94154 1.01176 1.02132 1.21874 0.96815 0.97310 1.00062 1.19596 0.91465 0.92179 0.89093 0.94906 1.21860 0.92851 1.37287 1.05566 0.94934 1.25837 0.95718 0.96195 1.00481 1.70080 1.10979 1.47079 1.30787 0.85848 0.79615 0.79590 0.77333 1.19276 1.23102 1.16732 1.62626 1.56627 1.01810 1.02651 1.22004 0.97899 0.89659 0.97211 1.22262 0.97733 0.97811 0.87911 1.59139 1.57161 1.04090 1.01855 1.19189 0.94340 0.95800 0.89894 1.21484 1.00608 0.99044 1.00074 1.21284 0.98610 0.99399 0.91731 1.21242 1.00281 0.97291 0.98773 1.20087 0.96334 0.95207 0.95338 1.20832 1.01916 1.01258 0.92842 1.20796 1.03418 1.02874 0.91151 1.22215 0.99222 0.85599 0.97799 1.22038 0.96597 0.98340 0.89729 0.93592 0.91346 0.92358 0.92357 0.94719 0.92721 0.96885 0.90214 0.89243 0.92052 0.85052 0.83781 0.83954 0.90546 0.91388 0.89883 0.86415 0.92797 0.89433 0.96788 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.80 71.98 0.71 -3.61 16 2 C -0.12 -5.00 4.73 30.59 0.14 -4.86 16 3 C 0.19 8.39 1.34 44.17 0.06 8.45 16 4 H 0.03 1.55 7.17 -2.39 -0.02 1.53 16 5 C -0.54 -30.09 7.71 25.60 0.20 -29.89 16 6 H 0.03 2.08 6.05 -2.91 -0.02 2.06 16 7 C 0.02 0.89 5.45 84.65 0.46 1.35 16 8 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 9 Si 0.95 44.88 24.41 68.60 1.67 46.56 16 10 H -0.27 -12.03 6.83 99.48 0.68 -11.35 16 11 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.24 -10.61 6.53 99.48 0.65 -9.96 16 13 N -0.51 -20.23 4.15 -874.88 -3.63 -23.86 16 14 C 0.06 2.33 5.32 86.31 0.46 2.79 16 15 C 0.07 2.13 4.30 86.31 0.37 2.50 16 16 N -0.51 -16.25 4.75 -694.78 -3.30 -19.55 16 17 C 0.11 2.98 5.63 38.21 0.22 3.19 16 18 C -0.19 -4.65 8.82 22.40 0.20 -4.46 16 19 C -0.09 -1.83 10.04 22.25 0.22 -1.61 16 20 C -0.16 -2.99 9.70 22.29 0.22 -2.77 16 21 C -0.07 -1.46 5.88 -19.88 -0.12 -1.58 16 22 C -0.11 -1.69 10.01 71.24 0.71 -0.97 16 23 C -0.16 -4.21 8.85 22.40 0.20 -4.01 16 24 C 0.08 2.40 5.38 86.31 0.46 2.87 16 25 C 0.06 2.35 4.96 86.31 0.43 2.78 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 2.10 7.75 -2.38 -0.02 2.09 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.36 6.11 -2.39 -0.01 2.34 16 30 H 0.03 1.50 3.22 -2.39 -0.01 1.50 16 31 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.01 0.60 6.88 -2.39 -0.02 0.58 16 33 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 34 H 0.09 2.49 7.17 -2.39 -0.02 2.47 16 35 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 36 H 0.13 2.94 5.81 -2.91 -0.02 2.92 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 41 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 42 H 0.12 3.06 7.20 -2.91 -0.02 3.04 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 2.50 6.83 -2.39 -0.02 2.48 16 45 H 0.01 0.65 6.51 -2.39 -0.02 0.63 16 46 H 0.08 3.04 6.07 -2.39 -0.01 3.03 16 Total: -1.00 -66.48 341.28 0.85 -65.63 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.87 Total: 20.49 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.94 Total: -29.81 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -6.64 Total: -102.86 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.67 Total: 46.56 kcal Total: -66.48 0.85 -65.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.582 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds