Wall clock time and date at job start Fri Apr 10 2020 19:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47289 * 2 1 4 4 H 1.08999 * 109.47323 * 182.74162 * 3 2 1 5 5 C 1.50697 * 109.47199 * 62.73802 * 3 2 1 6 6 H 1.08007 * 120.00038 * 274.17289 * 5 3 2 7 7 C 1.37874 * 120.00017 * 94.44565 * 5 3 2 8 8 N 1.31517 * 120.00174 * 183.72652 * 7 5 3 9 9 Si 1.86803 * 120.00006 * 3.72493 * 7 5 3 10 10 H 1.48494 * 109.47338 * 86.99172 * 9 7 5 11 11 H 1.48498 * 109.47259 * 206.99529 * 9 7 5 12 12 H 1.48508 * 109.46841 * 326.99760 * 9 7 5 13 13 N 1.46900 * 109.46871 * 302.74244 * 3 2 1 14 14 C 1.46962 * 111.00004 * 296.94595 * 13 3 2 15 15 C 1.53044 * 109.36403 * 176.81169 * 14 13 3 16 16 N 1.46955 * 109.36781 * 58.40490 * 15 14 13 17 17 C 1.46893 * 111.00675 * 176.80811 * 16 15 14 18 18 C 1.50701 * 109.47073 * 313.79946 * 17 16 15 19 19 C 1.38233 * 120.00357 * 269.72533 * 18 17 16 20 20 C 1.38231 * 120.00282 * 179.78721 * 19 18 17 21 21 C 1.38241 * 119.99845 * 0.44239 * 20 19 18 22 22 C 1.38229 * 119.99815 * 359.81043 * 21 20 19 23 23 C 1.38236 * 120.00450 * 359.97438 * 22 21 20 24 24 C 1.46961 * 110.87951 * 300.67985 * 16 15 14 25 25 C 1.46952 * 110.99953 * 173.15072 * 13 3 2 26 26 H 1.09006 * 109.47230 * 64.02541 * 1 2 3 27 27 H 1.08992 * 109.47508 * 184.02897 * 1 2 3 28 28 H 1.09005 * 109.47235 * 304.02885 * 1 2 3 29 29 H 1.08994 * 109.47183 * 239.99889 * 2 1 3 30 30 H 1.09000 * 109.47199 * 119.99930 * 2 1 3 31 31 H 0.97004 * 119.99828 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.49239 * 296.78223 * 14 13 3 33 33 H 1.09006 * 109.48449 * 56.84614 * 14 13 3 34 34 H 1.08997 * 109.49673 * 298.43297 * 15 14 13 35 35 H 1.09004 * 109.50873 * 178.38124 * 15 14 13 36 36 H 1.09007 * 109.47107 * 73.79693 * 17 16 15 37 37 H 1.08996 * 109.47938 * 193.80055 * 17 16 15 38 38 H 1.08004 * 119.99653 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.00206 * 180.27547 * 20 19 18 40 40 H 1.08006 * 119.99695 * 179.83471 * 21 20 19 41 41 H 1.08006 * 119.99644 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00139 * 179.97438 * 23 22 21 43 43 H 1.08994 * 109.48466 * 299.35053 * 24 16 15 44 44 H 1.08998 * 109.49004 * 179.28716 * 24 16 15 45 45 H 1.09003 * 109.49172 * 303.14980 * 25 13 3 46 46 H 1.08999 * 109.49182 * 63.19614 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0492 5 6 1.5939 2.1331 1.2630 6 1 0.6210 2.5999 1.3084 7 6 2.4299 2.1738 2.3586 8 7 2.0133 2.7116 3.4841 9 14 4.1544 1.4649 2.2444 10 1 5.0831 2.5025 1.7287 11 1 4.6000 1.0273 3.5917 12 1 4.1511 0.3011 1.3219 13 7 1.4970 2.1538 -1.1649 14 6 1.9711 1.5506 -2.4184 15 6 1.3219 2.2681 -3.6042 16 7 1.6571 3.6979 -3.5515 17 6 1.1142 4.4093 -4.7164 18 6 1.4154 3.6263 -5.9683 19 6 2.5848 3.8623 -6.6666 20 6 2.8632 3.1410 -7.8125 21 6 1.9677 2.1901 -8.2653 22 6 0.7959 1.9578 -7.5699 23 6 0.5196 2.6760 -6.4215 24 6 1.1830 4.3012 -2.2981 25 6 1.8322 3.5836 -1.1122 26 1 -0.3634 0.4501 -0.9239 27 1 -0.3634 -1.0250 0.0722 28 1 -0.3634 0.5751 0.8517 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.6016 2.7406 4.2548 32 1 3.0547 1.6494 -2.4825 33 1 1.7000 0.4950 -2.4393 34 1 0.2399 2.1462 -3.5551 35 1 1.6939 1.8415 -4.5358 36 1 0.0351 4.5169 -4.6060 37 1 1.5724 5.3958 -4.7859 38 1 3.2825 4.6081 -6.3152 39 1 3.7789 3.3223 -8.3556 40 1 2.1840 1.6285 -9.1621 41 1 0.0965 1.2146 -7.9234 42 1 -0.3962 2.4947 -5.8785 43 1 0.0995 4.2024 -2.2341 44 1 1.4541 5.3567 -2.2772 45 1 1.4598 4.0104 -0.1809 46 1 2.9143 3.7056 -1.1610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036984974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:46 Heat of formation + Delta-G solvation = 36.814675 kcal Electronic energy + Delta-G solvation = -23585.073698 eV Core-core repulsion = 20474.377377 eV Total energy + Delta-G solvation = -3110.696321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.81230 -38.45232 -36.01130 -33.02088 -31.93678 -31.04855 -30.82513 -30.29250 -27.64633 -26.15338 -23.92112 -23.24624 -22.74754 -22.26038 -20.95026 -19.72502 -18.72133 -16.87477 -16.69685 -16.02753 -15.43651 -15.34755 -14.61939 -14.30843 -14.19032 -14.00401 -13.88698 -13.49943 -13.28830 -13.04204 -12.75261 -12.69849 -12.44428 -12.08783 -11.81583 -11.57341 -11.24941 -11.07172 -10.99407 -10.95312 -10.73241 -10.65968 -10.39052 -10.13549 -9.88464 -9.81404 -9.63104 -8.99805 -8.90430 -8.82057 -8.55915 -8.05528 -7.23687 -6.08497 -4.06360 1.22951 1.31216 3.26852 3.35890 3.38458 3.62844 4.30039 4.40525 4.67193 4.76262 4.83017 4.89560 5.01256 5.24728 5.27293 5.37811 5.41425 5.52802 5.60112 5.61212 5.82270 5.86105 5.91001 5.93336 5.97283 6.07933 6.12379 6.26134 6.27945 6.35506 6.39531 6.40388 6.43643 6.55695 6.65964 6.78283 6.83537 6.89376 6.99887 7.09161 7.19277 7.25682 7.37801 7.42820 7.65509 8.05828 8.16567 8.67576 9.00663 9.55865 11.04166 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.003971 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.132732 B = 7048.793661 C = 7232.843028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.183 3.817 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.869 3.131 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.525 5.525 14 C 0.051 3.949 15 C 0.060 3.940 16 N -0.534 5.534 17 C 0.091 3.909 18 C -0.076 4.076 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.058 3.942 25 C 0.070 3.930 26 H 0.048 0.952 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.263 0.737 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 0.703 -20.530 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.018 0.982 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.697 3.303 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.068 4.068 16 N -0.259 5.259 17 C -0.036 4.036 18 C -0.076 4.076 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.070 4.070 25 C -0.058 4.058 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.888 0.752 -20.300 20.333 hybrid contribution 1.091 -0.435 0.049 1.176 sum 0.203 0.317 -20.250 20.254 Atomic orbital electron populations 1.21457 0.95910 0.98284 1.02470 1.21655 0.96799 0.97680 0.98399 1.19737 0.92073 0.91232 0.89349 0.98245 1.20835 1.03790 1.34864 0.93999 0.90038 1.24970 0.97818 0.94780 0.95357 1.69889 1.36463 1.45233 1.01982 0.86978 0.85835 0.80241 0.77220 1.20420 1.21495 1.19097 1.62241 1.59418 1.02065 1.01282 1.22159 0.96924 0.98300 0.90391 1.22232 0.98290 0.87837 0.98407 1.62345 1.59057 1.03014 1.01442 1.21089 0.97885 0.96877 0.87744 1.19830 0.94809 0.96975 0.96010 1.21049 0.96354 0.99749 0.94795 1.21144 0.99396 0.96688 0.96865 1.21126 0.94681 0.98456 1.00028 1.21105 0.97455 0.99815 0.95650 1.21121 0.99481 0.96053 0.96459 1.22288 0.97927 0.97983 0.88769 1.21970 0.97406 0.89116 0.97325 0.93263 0.95984 0.91596 0.95528 0.93051 0.92675 0.95499 0.90894 0.94581 0.90885 0.94110 0.90131 0.85945 0.86250 0.86378 0.86222 0.86272 0.94276 0.91111 0.88281 0.95598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.52 37.16 0.35 -2.12 16 2 C -0.11 -2.29 5.33 -26.73 -0.14 -2.43 16 3 C 0.18 4.24 1.37 -68.86 -0.09 4.15 16 4 H 0.00 0.00 5.33 -51.93 -0.28 -0.28 16 5 C -0.50 -13.26 6.19 -34.44 -0.21 -13.47 16 6 H 0.08 2.40 7.83 -52.48 -0.41 1.99 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.87 21.43 27.00 -169.99 -4.59 16.84 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.37 6.78 56.52 0.38 -5.99 16 13 N -0.52 -10.74 3.77 -227.87 -0.86 -11.60 16 14 C 0.05 0.92 5.37 -3.77 -0.02 0.90 16 15 C 0.06 0.93 4.64 -3.77 -0.02 0.91 16 16 N -0.53 -7.99 4.85 -235.92 -1.14 -9.13 16 17 C 0.09 1.12 5.44 -4.98 -0.03 1.09 16 18 C -0.08 -0.89 4.14 -104.62 -0.43 -1.32 16 19 C -0.10 -1.11 9.70 -39.59 -0.38 -1.50 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.11 -1.24 7.84 -39.58 -0.31 -1.55 16 24 C 0.06 0.93 5.58 -3.76 -0.02 0.91 16 25 C 0.07 1.39 5.30 -3.77 -0.02 1.37 16 26 H 0.05 0.95 7.67 -51.93 -0.40 0.55 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 1.47 7.10 -51.93 -0.37 1.10 16 29 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 30 H 0.05 1.15 8.12 -51.93 -0.42 0.73 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.27 6.29 -51.93 -0.33 0.94 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.07 5.85 -51.93 -0.30 0.76 16 36 H 0.04 0.49 8.02 -51.92 -0.42 0.07 16 37 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.10 2.19 6.70 -51.93 -0.35 1.84 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -28.88 351.58 -10.98 -39.86 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.83 Total: 0.55 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.62 Total: -15.92 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -1.23 Total: -46.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.88 -10.98 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036984974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.672 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds