Wall clock time and date at job start Fri Apr 10 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47289 * 2 1 4 4 H 1.08999 * 109.47323 * 182.74162 * 3 2 1 5 5 C 1.50697 * 109.47199 * 62.73802 * 3 2 1 6 6 H 1.08007 * 120.00038 * 274.17289 * 5 3 2 7 7 C 1.37874 * 120.00017 * 94.44565 * 5 3 2 8 8 N 1.31517 * 120.00174 * 183.72652 * 7 5 3 9 9 Si 1.86803 * 120.00006 * 3.72493 * 7 5 3 10 10 H 1.48494 * 109.47338 * 86.99172 * 9 7 5 11 11 H 1.48498 * 109.47259 * 206.99529 * 9 7 5 12 12 H 1.48508 * 109.46841 * 326.99760 * 9 7 5 13 13 N 1.46900 * 109.46871 * 302.74244 * 3 2 1 14 14 C 1.46962 * 111.00004 * 296.94595 * 13 3 2 15 15 C 1.53044 * 109.36403 * 176.81169 * 14 13 3 16 16 N 1.46955 * 109.36781 * 58.40490 * 15 14 13 17 17 C 1.46893 * 111.00675 * 176.80811 * 16 15 14 18 18 C 1.50701 * 109.47073 * 313.79946 * 17 16 15 19 19 C 1.38233 * 120.00357 * 269.72533 * 18 17 16 20 20 C 1.38231 * 120.00282 * 179.78721 * 19 18 17 21 21 C 1.38241 * 119.99845 * 0.44239 * 20 19 18 22 22 C 1.38229 * 119.99815 * 359.81043 * 21 20 19 23 23 C 1.38236 * 120.00450 * 359.97438 * 22 21 20 24 24 C 1.46961 * 110.87951 * 300.67985 * 16 15 14 25 25 C 1.46952 * 110.99953 * 173.15072 * 13 3 2 26 26 H 1.09006 * 109.47230 * 64.02541 * 1 2 3 27 27 H 1.08992 * 109.47508 * 184.02897 * 1 2 3 28 28 H 1.09005 * 109.47235 * 304.02885 * 1 2 3 29 29 H 1.08994 * 109.47183 * 239.99889 * 2 1 3 30 30 H 1.09000 * 109.47199 * 119.99930 * 2 1 3 31 31 H 0.97004 * 119.99828 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.49239 * 296.78223 * 14 13 3 33 33 H 1.09006 * 109.48449 * 56.84614 * 14 13 3 34 34 H 1.08997 * 109.49673 * 298.43297 * 15 14 13 35 35 H 1.09004 * 109.50873 * 178.38124 * 15 14 13 36 36 H 1.09007 * 109.47107 * 73.79693 * 17 16 15 37 37 H 1.08996 * 109.47938 * 193.80055 * 17 16 15 38 38 H 1.08004 * 119.99653 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.00206 * 180.27547 * 20 19 18 40 40 H 1.08006 * 119.99695 * 179.83471 * 21 20 19 41 41 H 1.08006 * 119.99644 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00139 * 179.97438 * 23 22 21 43 43 H 1.08994 * 109.48466 * 299.35053 * 24 16 15 44 44 H 1.08998 * 109.49004 * 179.28716 * 24 16 15 45 45 H 1.09003 * 109.49172 * 303.14980 * 25 13 3 46 46 H 1.08999 * 109.49182 * 63.19614 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0492 5 6 1.5939 2.1331 1.2630 6 1 0.6210 2.5999 1.3084 7 6 2.4299 2.1738 2.3586 8 7 2.0133 2.7116 3.4841 9 14 4.1544 1.4649 2.2444 10 1 5.0831 2.5025 1.7287 11 1 4.6000 1.0273 3.5917 12 1 4.1511 0.3011 1.3219 13 7 1.4970 2.1538 -1.1649 14 6 1.9711 1.5506 -2.4184 15 6 1.3219 2.2681 -3.6042 16 7 1.6571 3.6979 -3.5515 17 6 1.1142 4.4093 -4.7164 18 6 1.4154 3.6263 -5.9683 19 6 2.5848 3.8623 -6.6666 20 6 2.8632 3.1410 -7.8125 21 6 1.9677 2.1901 -8.2653 22 6 0.7959 1.9578 -7.5699 23 6 0.5196 2.6760 -6.4215 24 6 1.1830 4.3012 -2.2981 25 6 1.8322 3.5836 -1.1122 26 1 -0.3634 0.4501 -0.9239 27 1 -0.3634 -1.0250 0.0722 28 1 -0.3634 0.5751 0.8517 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.6016 2.7406 4.2548 32 1 3.0547 1.6494 -2.4825 33 1 1.7000 0.4950 -2.4393 34 1 0.2399 2.1462 -3.5551 35 1 1.6939 1.8415 -4.5358 36 1 0.0351 4.5169 -4.6060 37 1 1.5724 5.3958 -4.7859 38 1 3.2825 4.6081 -6.3152 39 1 3.7789 3.3223 -8.3556 40 1 2.1840 1.6285 -9.1621 41 1 0.0965 1.2146 -7.9234 42 1 -0.3962 2.4947 -5.8785 43 1 0.0995 4.2024 -2.2341 44 1 1.4541 5.3567 -2.2772 45 1 1.4598 4.0104 -0.1809 46 1 2.9143 3.7056 -1.1610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036984974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:45 Heat of formation + Delta-G solvation = 19.703146 kcal Electronic energy + Delta-G solvation = -23585.815710 eV Core-core repulsion = 20474.377377 eV Total energy + Delta-G solvation = -3111.438333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84410 -39.69429 -37.45170 -34.66639 -33.71568 -32.04279 -31.92180 -31.56939 -29.22259 -27.64827 -25.42180 -24.62354 -24.01501 -23.32974 -21.88160 -21.31745 -20.32952 -18.81161 -17.64976 -17.44908 -16.41271 -16.25809 -16.22216 -15.77864 -15.51053 -15.42485 -15.29021 -14.95639 -14.68618 -14.35747 -14.17421 -13.91642 -13.71125 -13.30788 -13.07569 -12.90698 -12.89712 -12.71050 -12.54852 -12.16075 -12.14400 -11.91133 -11.82536 -11.74895 -11.70879 -11.56059 -11.26447 -10.78218 -10.69386 -9.75468 -9.69685 -9.22029 -8.92736 -8.26176 -6.26369 0.45082 0.55540 1.29378 1.32691 1.41537 2.32937 2.77425 3.03841 3.21880 3.31253 3.79012 3.98657 4.05517 4.20455 4.22101 4.28807 4.32011 4.38632 4.46717 4.47206 4.54064 4.54539 4.65866 4.68597 4.72632 4.77731 4.83445 4.91138 5.00169 5.05053 5.12486 5.15343 5.18643 5.21496 5.26005 5.38283 5.42208 5.60667 5.67112 5.69967 5.75107 5.76844 6.04595 6.08520 6.15720 6.20033 6.42292 6.73111 6.81723 7.38605 8.90221 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.003971 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.132732 B = 7048.793661 C = 7232.843028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C 0.184 3.816 4 H -0.012 1.012 5 C -0.482 4.482 6 H 0.042 0.958 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.251 1.251 13 N -0.528 5.528 14 C 0.052 3.948 15 C 0.072 3.928 16 N -0.541 5.541 17 C 0.095 3.905 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.123 4.123 24 C 0.070 3.930 25 C 0.073 3.927 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.017 0.983 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.121 0.879 43 H 0.037 0.963 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -0.522 -23.633 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.146 4.146 3 C 0.077 3.923 4 H 0.006 0.994 5 C -0.521 4.521 6 H 0.060 0.940 7 C -0.179 4.179 8 N -0.585 5.585 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.175 1.175 13 N -0.253 5.253 14 C -0.077 4.077 15 C -0.056 4.056 16 N -0.266 5.266 17 C -0.031 4.031 18 C -0.092 4.092 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.058 4.058 25 C -0.055 4.055 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.139 0.861 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -0.295 -0.478 -23.437 23.444 hybrid contribution 0.840 -0.022 0.914 1.242 sum 0.545 -0.499 -22.523 22.535 Atomic orbital electron populations 1.21331 0.94930 0.99510 1.01277 1.21614 0.97641 0.96149 0.99157 1.19639 0.91387 0.92419 0.88877 0.99421 1.20916 1.01882 1.33685 0.95583 0.94010 1.25675 1.01578 0.95598 0.95049 1.70024 1.37997 1.47608 1.02907 0.86050 0.81261 0.80006 0.77479 1.20229 1.21232 1.17487 1.62180 1.59275 1.02220 1.01613 1.22246 0.96525 0.99092 0.89804 1.22103 0.97971 0.87966 0.97524 1.62304 1.59513 1.03021 1.01744 1.21094 0.98055 0.97111 0.86875 1.19813 0.95576 0.97717 0.96045 1.21211 0.96340 1.00254 0.95403 1.21432 1.00259 0.96401 0.96552 1.21470 0.94230 0.98157 1.00586 1.21391 0.98022 0.99894 0.95204 1.21241 0.99546 0.96254 0.97131 1.22096 0.97251 0.98419 0.88001 1.21863 0.96623 0.89207 0.97825 0.92584 0.93175 0.94921 0.92720 0.94234 0.92709 0.96469 0.89883 0.94549 0.89545 0.93734 0.89186 0.85652 0.84375 0.84073 0.84349 0.86091 0.94514 0.89345 0.91608 0.97025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 9.52 71.98 0.69 -3.71 16 2 C -0.11 -4.44 5.33 30.59 0.16 -4.27 16 3 C 0.18 8.55 1.37 44.17 0.06 8.61 16 4 H -0.01 -0.57 5.33 -2.39 -0.01 -0.58 16 5 C -0.48 -26.65 6.19 25.60 0.16 -26.49 16 6 H 0.04 2.60 7.83 -2.91 -0.02 2.58 16 7 C 0.02 1.06 5.47 84.65 0.46 1.52 16 8 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 9 Si 0.93 44.69 27.00 68.60 1.85 46.54 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.39 6.78 99.48 0.67 -10.72 16 13 N -0.53 -21.49 3.77 -874.86 -3.29 -24.78 16 14 C 0.05 1.76 5.37 86.31 0.46 2.23 16 15 C 0.07 2.07 4.64 86.31 0.40 2.47 16 16 N -0.54 -15.30 4.85 -900.30 -4.37 -19.67 16 17 C 0.10 2.15 5.44 85.56 0.47 2.62 16 18 C -0.09 -1.94 4.14 -19.86 -0.08 -2.02 16 19 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 20 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 23 C -0.12 -2.42 7.84 22.27 0.17 -2.24 16 24 C 0.07 2.21 5.58 86.31 0.48 2.69 16 25 C 0.07 2.96 5.30 86.31 0.46 3.42 16 26 H 0.06 2.07 7.67 -2.38 -0.02 2.05 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.46 7.10 -2.38 -0.02 1.44 16 29 H 0.05 1.96 6.54 -2.39 -0.02 1.95 16 30 H 0.04 1.71 8.12 -2.39 -0.02 1.69 16 31 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.08 2.66 6.29 -2.38 -0.01 2.64 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 2.30 5.85 -2.38 -0.01 2.28 16 36 H 0.04 0.98 8.02 -2.38 -0.02 0.96 16 37 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 38 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 42 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.07 3.06 6.70 -2.39 -0.02 3.05 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -63.66 351.58 0.16 -63.49 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.89 Total: 15.20 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.78 Total: -22.85 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -7.36 Total: -102.39 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.85 Total: 46.54 kcal Total: -63.66 0.16 -63.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036984974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.198 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds