Wall clock time and date at job start Fri Apr 10 2020 19:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46954 * 111.00076 * 2 1 4 4 C 1.53050 * 109.36336 * 176.81659 * 3 2 1 5 5 N 1.46955 * 109.36860 * 58.39761 * 4 3 2 6 6 C 1.46898 * 111.00239 * 176.80937 * 5 4 3 7 7 C 1.52996 * 109.47120 * 293.80205 * 6 5 4 8 8 C 1.53002 * 109.46737 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47026 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99947 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99751 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99522 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47554 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47178 * 120.00131 * 13 11 9 16 16 H 1.48506 * 109.46809 * 239.99715 * 13 11 9 17 17 C 1.46960 * 110.88092 * 300.68478 * 5 4 3 18 18 H 1.09005 * 109.48471 * 299.32807 * 17 5 4 19 19 C 1.50693 * 109.49116 * 179.28491 * 17 5 4 20 20 C 1.38233 * 120.00207 * 140.03605 * 19 17 5 21 21 C 1.38234 * 120.00037 * 179.72405 * 20 19 17 22 22 C 1.38235 * 120.00220 * 0.28719 * 21 20 19 23 23 C 1.38238 * 119.99712 * 359.97124 * 22 21 20 24 24 C 1.38234 * 120.00028 * 359.97438 * 23 22 21 25 25 C 1.46962 * 110.99359 * 236.17727 * 2 1 3 26 26 H 1.08996 * 109.47292 * 56.04474 * 1 2 3 27 27 H 1.08998 * 109.46948 * 176.05167 * 1 2 3 28 28 H 1.09004 * 109.46526 * 296.04693 * 1 2 3 29 29 H 1.08998 * 109.49256 * 56.84296 * 3 2 1 30 30 H 1.09003 * 109.48561 * 296.78109 * 3 2 1 31 31 H 1.09000 * 109.48681 * 298.42847 * 4 3 2 32 32 H 1.08996 * 109.48874 * 178.36731 * 4 3 2 33 33 H 1.09001 * 109.46770 * 53.80230 * 6 5 4 34 34 H 1.08995 * 109.46829 * 173.79621 * 6 5 4 35 35 H 1.08992 * 109.47160 * 299.99854 * 7 6 5 36 36 H 1.08999 * 109.47344 * 60.00258 * 7 6 5 37 37 H 1.09001 * 109.47131 * 300.00013 * 8 7 6 38 38 H 1.08999 * 109.47346 * 60.00190 * 8 7 6 39 39 H 0.97001 * 119.99916 * 180.02562 * 12 11 9 40 40 H 1.08002 * 120.00157 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.00009 * 180.25939 * 21 20 19 42 42 H 1.07996 * 120.00490 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99691 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99968 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47135 * 63.21525 * 25 2 1 46 46 H 1.08998 * 109.50495 * 303.14310 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0802 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0600 7 6 6.0291 1.9863 -1.3105 8 6 7.5591 1.9863 -1.3100 9 6 8.0615 3.3855 -1.5574 10 1 7.3597 4.1938 -1.7002 11 6 9.4171 3.6334 -1.6013 12 7 10.2717 2.6490 -1.4278 13 14 10.0397 5.3678 -1.9072 14 1 8.8848 6.2870 -2.0698 15 1 10.8650 5.8082 -0.7538 16 1 10.8646 5.3870 -3.1420 17 6 3.5234 -0.8062 -1.0599 18 1 3.8256 -1.3117 -0.1427 19 6 4.0685 -1.5540 -2.2492 20 6 4.4531 -2.8753 -2.1179 21 6 4.9478 -3.5629 -3.2103 22 6 5.0634 -2.9277 -4.4326 23 6 4.6837 -1.6048 -4.5626 24 6 4.1880 -0.9175 -3.4705 25 6 1.9956 -0.7637 -1.1399 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 -0.3632 0.4513 0.9234 29 1 1.6014 1.9129 0.8602 30 1 1.6938 1.8773 -0.9174 31 1 3.8254 0.8479 1.0105 32 1 3.9179 2.3447 0.0511 33 1 5.8825 0.2143 -0.0943 34 1 5.8823 -0.0949 -1.8472 35 1 5.6657 2.3378 -2.2761 36 1 5.6658 2.6469 -0.5232 37 1 7.9221 1.6350 -0.3441 38 1 7.9227 1.3257 -2.0970 39 1 11.2253 2.8236 -1.4584 40 1 4.3626 -3.3718 -1.1631 41 1 5.2444 -4.5964 -3.1087 42 1 5.4502 -3.4648 -5.2859 43 1 4.7744 -1.1084 -5.5174 44 1 3.8918 0.1161 -3.5719 45 1 1.6934 -0.2827 -2.0702 46 1 1.6015 -1.7796 -1.1105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042314545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:57 Heat of formation + Delta-G solvation = 27.789148 kcal Electronic energy + Delta-G solvation = -23240.942363 eV Core-core repulsion = 20129.854665 eV Total energy + Delta-G solvation = -3111.087698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10668 -38.33166 -35.91950 -33.66668 -32.54301 -31.23478 -30.76812 -29.12341 -28.41690 -25.92651 -23.97567 -23.95530 -22.49625 -22.13585 -21.08564 -19.87231 -19.45229 -16.91334 -16.30601 -15.80853 -15.47137 -15.34465 -15.07805 -14.57596 -14.44033 -14.26228 -14.07183 -13.82207 -13.39427 -13.18966 -12.75402 -12.63538 -12.38445 -12.13030 -12.02102 -11.70413 -11.56770 -11.27215 -11.17685 -10.92982 -10.86949 -10.78586 -10.67266 -10.43392 -10.32330 -9.56117 -9.29534 -9.00196 -8.78250 -8.57744 -8.47392 -8.30809 -8.05258 -5.95823 -3.97671 1.43630 1.54412 3.33294 3.40627 3.44997 3.76580 3.90744 4.10536 4.49905 4.77054 4.91390 4.99675 5.05950 5.12193 5.13677 5.26476 5.28095 5.35234 5.40036 5.47050 5.49469 5.59388 5.66867 5.68168 5.72579 5.79116 5.87730 6.00517 6.06118 6.07797 6.13107 6.20902 6.39471 6.55174 6.64462 6.69137 6.75202 6.82922 6.89981 6.93256 7.11332 7.17608 7.40303 7.43589 7.73628 7.88949 8.05155 8.48345 9.09852 9.66103 11.15671 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.004399 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.765523 B = 6364.226349 C = 7940.118883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.055 3.945 5 N -0.532 5.532 6 C 0.055 3.945 7 C -0.102 4.102 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.126 3.874 18 H 0.054 0.946 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.086 4.086 25 C 0.070 3.930 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.043 0.957 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 -10.567 -0.837 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.073 4.073 5 N -0.257 5.257 6 C -0.072 4.072 7 C -0.140 4.140 8 C -0.015 4.015 9 C -0.554 4.554 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.018 3.982 18 H 0.072 0.928 19 C -0.078 4.078 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.058 4.058 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.062 0.938 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.150 -10.590 -0.814 21.029 hybrid contribution 0.588 0.882 -0.144 1.070 sum -17.561 -9.708 -0.958 20.089 Atomic orbital electron populations 1.22329 0.87364 1.01690 1.00793 1.62144 1.07603 1.14441 1.42959 1.22213 0.95194 0.88781 1.00917 1.22193 0.93351 0.99733 0.92043 1.62246 1.09451 1.11581 1.42420 1.22333 0.84417 1.00348 1.00084 1.21626 0.99155 0.92732 1.00479 1.19063 0.88464 0.96984 0.97017 1.21284 0.91513 0.94290 1.48363 0.92687 1.25024 0.97110 0.96864 0.95497 1.69980 1.01904 1.31130 1.50549 0.86566 0.78850 0.85002 0.77766 1.19746 1.21072 1.21055 1.20501 0.93478 0.89420 0.94848 0.92848 1.19680 0.99559 0.93764 0.94833 1.20996 0.99477 0.94165 0.98715 1.21037 1.00404 0.99778 0.93077 1.21132 1.00149 0.95207 0.97505 1.21200 0.99387 0.94614 0.98948 1.21105 0.97481 1.00132 0.91692 1.22143 0.93595 0.98136 0.91968 0.95627 0.91592 0.91386 0.90462 0.93917 0.94189 0.89195 0.95442 0.90730 0.92772 0.93567 0.96898 0.96670 0.93140 0.86429 0.86375 0.86447 0.86180 0.85155 0.93843 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.63 60.07 0.58 0.82 16 2 N -0.55 -6.35 4.97 -242.75 -1.21 -7.55 16 3 C 0.06 0.68 5.62 -3.77 -0.02 0.66 16 4 C 0.05 0.77 5.41 -3.77 -0.02 0.75 16 5 N -0.53 -8.09 3.85 -227.89 -0.88 -8.97 16 6 C 0.05 1.00 4.59 -3.83 -0.02 0.98 16 7 C -0.10 -2.15 5.09 -26.73 -0.14 -2.29 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 13 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 17 C 0.13 1.71 2.16 -68.81 -0.15 1.56 16 18 H 0.05 0.77 8.01 -51.93 -0.42 0.35 16 19 C -0.08 -1.05 3.63 -104.63 -0.38 -1.43 16 20 C -0.11 -1.43 9.67 -39.58 -0.38 -1.81 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.09 -1.19 8.25 -39.58 -0.33 -1.52 16 25 C 0.07 0.83 4.88 -3.77 -0.02 0.81 16 26 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 34 H 0.07 1.42 5.99 -51.93 -0.31 1.10 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.95 6.49 -51.93 -0.34 0.61 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.12 1.28 8.04 -52.49 -0.42 0.86 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.13 1.89 7.71 -52.49 -0.40 1.49 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -30.79 361.92 -11.62 -42.42 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.09 Total: -1.28 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.62 Total: -20.35 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -1.35 Total: -43.17 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.79 -11.62 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042314545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.206 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds