Wall clock time and date at job start Fri Apr 10 2020 19:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46954 * 111.00076 * 2 1 4 4 C 1.53050 * 109.36336 * 176.81659 * 3 2 1 5 5 N 1.46955 * 109.36860 * 58.39761 * 4 3 2 6 6 C 1.46898 * 111.00239 * 176.80937 * 5 4 3 7 7 C 1.52996 * 109.47120 * 293.80205 * 6 5 4 8 8 C 1.53002 * 109.46737 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47026 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99947 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99751 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99522 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47554 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47178 * 120.00131 * 13 11 9 16 16 H 1.48506 * 109.46809 * 239.99715 * 13 11 9 17 17 C 1.46960 * 110.88092 * 300.68478 * 5 4 3 18 18 H 1.09005 * 109.48471 * 299.32807 * 17 5 4 19 19 C 1.50693 * 109.49116 * 179.28491 * 17 5 4 20 20 C 1.38233 * 120.00207 * 140.03605 * 19 17 5 21 21 C 1.38234 * 120.00037 * 179.72405 * 20 19 17 22 22 C 1.38235 * 120.00220 * 0.28719 * 21 20 19 23 23 C 1.38238 * 119.99712 * 359.97124 * 22 21 20 24 24 C 1.38234 * 120.00028 * 359.97438 * 23 22 21 25 25 C 1.46962 * 110.99359 * 236.17727 * 2 1 3 26 26 H 1.08996 * 109.47292 * 56.04474 * 1 2 3 27 27 H 1.08998 * 109.46948 * 176.05167 * 1 2 3 28 28 H 1.09004 * 109.46526 * 296.04693 * 1 2 3 29 29 H 1.08998 * 109.49256 * 56.84296 * 3 2 1 30 30 H 1.09003 * 109.48561 * 296.78109 * 3 2 1 31 31 H 1.09000 * 109.48681 * 298.42847 * 4 3 2 32 32 H 1.08996 * 109.48874 * 178.36731 * 4 3 2 33 33 H 1.09001 * 109.46770 * 53.80230 * 6 5 4 34 34 H 1.08995 * 109.46829 * 173.79621 * 6 5 4 35 35 H 1.08992 * 109.47160 * 299.99854 * 7 6 5 36 36 H 1.08999 * 109.47344 * 60.00258 * 7 6 5 37 37 H 1.09001 * 109.47131 * 300.00013 * 8 7 6 38 38 H 1.08999 * 109.47346 * 60.00190 * 8 7 6 39 39 H 0.97001 * 119.99916 * 180.02562 * 12 11 9 40 40 H 1.08002 * 120.00157 * 0.02562 * 20 19 17 41 41 H 1.07999 * 120.00009 * 180.25939 * 21 20 19 42 42 H 1.07996 * 120.00490 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99691 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.99968 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47135 * 63.21525 * 25 2 1 46 46 H 1.08998 * 109.50495 * 303.14310 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0802 5 7 4.0501 0.5658 -1.0599 6 6 5.5191 0.5658 -1.0600 7 6 6.0291 1.9863 -1.3105 8 6 7.5591 1.9863 -1.3100 9 6 8.0615 3.3855 -1.5574 10 1 7.3597 4.1938 -1.7002 11 6 9.4171 3.6334 -1.6013 12 7 10.2717 2.6490 -1.4278 13 14 10.0397 5.3678 -1.9072 14 1 8.8848 6.2870 -2.0698 15 1 10.8650 5.8082 -0.7538 16 1 10.8646 5.3870 -3.1420 17 6 3.5234 -0.8062 -1.0599 18 1 3.8256 -1.3117 -0.1427 19 6 4.0685 -1.5540 -2.2492 20 6 4.4531 -2.8753 -2.1179 21 6 4.9478 -3.5629 -3.2103 22 6 5.0634 -2.9277 -4.4326 23 6 4.6837 -1.6048 -4.5626 24 6 4.1880 -0.9175 -3.4705 25 6 1.9956 -0.7637 -1.1399 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 -0.3632 0.4513 0.9234 29 1 1.6014 1.9129 0.8602 30 1 1.6938 1.8773 -0.9174 31 1 3.8254 0.8479 1.0105 32 1 3.9179 2.3447 0.0511 33 1 5.8825 0.2143 -0.0943 34 1 5.8823 -0.0949 -1.8472 35 1 5.6657 2.3378 -2.2761 36 1 5.6658 2.6469 -0.5232 37 1 7.9221 1.6350 -0.3441 38 1 7.9227 1.3257 -2.0970 39 1 11.2253 2.8236 -1.4584 40 1 4.3626 -3.3718 -1.1631 41 1 5.2444 -4.5964 -3.1087 42 1 5.4502 -3.4648 -5.2859 43 1 4.7744 -1.1084 -5.5174 44 1 3.8918 0.1161 -3.5719 45 1 1.6934 -0.2827 -2.0702 46 1 1.6015 -1.7796 -1.1105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042314545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:56 Heat of formation + Delta-G solvation = 9.906919 kcal Electronic energy + Delta-G solvation = -23241.717794 eV Core-core repulsion = 20129.854665 eV Total energy + Delta-G solvation = -3111.863129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17471 -39.31353 -37.20043 -35.51102 -33.88853 -32.88504 -31.73731 -30.20956 -29.68244 -27.56561 -25.24991 -24.98811 -23.85471 -23.41344 -22.06691 -21.63629 -20.53835 -18.51452 -17.85564 -16.98439 -16.62048 -16.46960 -16.32724 -16.02919 -15.79086 -15.39664 -15.20319 -15.01663 -14.66311 -14.31112 -14.15627 -13.73035 -13.69550 -13.57669 -13.31123 -12.98703 -12.78113 -12.68677 -12.56302 -12.42631 -12.32728 -12.17767 -11.91764 -11.84179 -11.62374 -11.38803 -11.30486 -11.04507 -10.55781 -9.76201 -9.57235 -9.43557 -9.26663 -8.19950 -6.31128 0.45740 0.56318 1.39676 1.40026 1.53682 2.40698 2.78220 2.88796 3.02315 3.13191 3.74701 3.92003 3.98961 4.07089 4.16238 4.22984 4.25280 4.26646 4.34510 4.40848 4.49169 4.59930 4.63639 4.68685 4.69840 4.72193 4.78066 4.88031 4.89404 4.94652 5.02074 5.06501 5.09845 5.12775 5.23126 5.25842 5.50974 5.59573 5.67448 5.69928 5.73387 5.85258 5.95706 5.96704 6.13751 6.15027 6.22310 6.27338 6.85626 7.38171 8.92370 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.004399 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.765523 B = 6364.226349 C = 7940.118883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.064 3.936 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.073 3.927 7 C -0.085 4.085 8 C 0.028 3.972 9 C -0.540 4.540 10 H 0.060 0.940 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.278 1.278 17 C 0.130 3.870 18 H 0.046 0.954 19 C -0.089 4.089 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.103 4.103 25 C 0.078 3.922 26 H 0.027 0.973 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.052 0.948 37 H -0.013 1.013 38 H -0.012 1.012 39 H 0.263 0.737 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.117 0.883 45 H 0.037 0.963 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.552 -10.526 -0.961 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.064 4.064 4 C -0.075 4.075 5 N -0.256 5.256 6 C -0.055 4.055 7 C -0.122 4.122 8 C -0.009 4.009 9 C -0.578 4.578 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.203 1.203 17 C 0.021 3.979 18 H 0.064 0.936 19 C -0.090 4.090 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.121 4.121 25 C -0.051 4.051 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.149 0.851 44 H 0.135 0.865 45 H 0.055 0.945 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.414 -10.552 -0.935 22.116 hybrid contribution 0.972 0.802 -0.104 1.265 sum -18.442 -9.751 -1.039 20.887 Atomic orbital electron populations 1.22394 0.85482 1.02676 1.01508 1.62166 1.09313 1.13983 1.42661 1.22143 0.93301 0.89375 1.01563 1.22240 0.95174 0.98885 0.91226 1.62190 1.07218 1.13131 1.43098 1.21962 0.86634 0.97875 0.99023 1.21353 0.95465 0.94923 1.00505 1.18941 0.91953 0.95593 0.94444 1.21689 0.92197 0.95247 1.48622 0.92223 1.25990 0.97314 1.01602 0.94913 1.70113 1.02401 1.33693 1.51255 0.85392 0.78441 0.79314 0.77862 1.18533 1.20288 1.20339 1.20526 0.94726 0.88039 0.94603 0.93614 1.19749 1.00262 0.94428 0.94596 1.21243 0.99325 0.93879 0.99788 1.21394 0.99421 1.00970 0.92645 1.21464 0.99530 0.94897 0.98539 1.21430 0.99399 0.95365 0.99157 1.21084 0.98740 0.99780 0.92539 1.22067 0.92139 0.98978 0.91871 0.95388 0.90452 0.90217 0.88609 0.94296 0.94808 0.90040 0.96504 0.91749 0.93023 0.92981 0.99439 0.99400 0.92794 0.85028 0.83821 0.84106 0.85118 0.86517 0.94521 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.63 127.69 1.23 1.65 16 2 N -0.56 -11.98 4.97 -921.92 -4.58 -16.56 16 3 C 0.06 1.45 5.62 86.31 0.48 1.93 16 4 C 0.05 1.47 5.41 86.31 0.47 1.94 16 5 N -0.53 -16.34 3.85 -874.91 -3.37 -19.71 16 6 C 0.07 2.72 4.59 86.30 0.40 3.12 16 7 C -0.08 -3.67 5.09 30.59 0.16 -3.52 16 8 C 0.03 1.56 4.97 29.85 0.15 1.71 16 9 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 12 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 13 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 C 0.13 3.49 2.16 44.17 0.10 3.58 16 18 H 0.05 1.31 8.01 -2.38 -0.02 1.29 16 19 C -0.09 -2.41 3.63 -19.87 -0.07 -2.49 16 20 C -0.12 -2.97 9.67 22.27 0.22 -2.76 16 21 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 22 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 23 C -0.14 -3.44 10.05 22.27 0.22 -3.21 16 24 C -0.10 -2.91 8.25 22.27 0.18 -2.73 16 25 C 0.08 1.76 4.88 86.31 0.42 2.18 16 26 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 1.05 8.07 -2.39 -0.02 1.03 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 2.39 6.34 -2.39 -0.02 2.37 16 33 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.06 2.54 5.99 -2.39 -0.01 2.53 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 2.18 6.49 -2.39 -0.02 2.17 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.13 2.70 8.04 -2.91 -0.02 2.67 16 41 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.12 3.53 7.71 -2.91 -0.02 3.50 16 45 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 Total: -1.00 -66.62 361.92 0.37 -66.25 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.91 Total: 15.44 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 5.09 Total: -34.65 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -7.66 Total: -94.12 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.62 0.37 -66.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042314545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.157 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds