Wall clock time and date at job start Fri Apr 10 2020 19:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99866 * 2 1 4 4 C 1.53006 * 109.47209 * 293.95307 * 3 2 1 5 5 C 1.50694 * 109.47149 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00150 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99727 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00225 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47002 * 60.00073 * 9 7 5 11 11 H 1.48498 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46900 * 299.99867 * 9 7 5 13 13 C 1.46896 * 110.99943 * 123.95118 * 2 1 3 14 14 C 1.50697 * 109.46957 * 66.04846 * 13 2 1 15 15 C 1.38116 * 120.03829 * 262.47230 * 14 13 2 16 16 C 1.38271 * 120.07863 * 179.79021 * 15 14 13 17 17 C 1.38311 * 120.14545 * 0.46679 * 16 15 14 18 18 C 1.38082 * 120.07205 * 359.78732 * 17 16 15 19 19 C 1.38894 * 120.03963 * 82.74675 * 14 13 2 20 20 N 1.39680 * 120.07214 * 359.95950 * 19 14 13 21 21 C 1.48533 * 110.99814 * 176.37882 * 20 19 14 22 22 C 1.54934 * 103.22552 * 159.71753 * 21 20 19 23 23 C 1.54591 * 102.92390 * 322.58649 * 22 21 20 24 24 C 1.47901 * 110.99764 * 293.77305 * 20 19 14 25 25 H 1.09006 * 109.47046 * 60.00028 * 1 2 3 26 26 H 1.09001 * 109.47562 * 300.00334 * 1 2 3 27 27 H 1.08998 * 109.47504 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47499 * 53.95244 * 3 2 1 29 29 H 1.09002 * 109.47165 * 173.95850 * 3 2 1 30 30 H 1.08994 * 109.46838 * 300.00342 * 4 3 2 31 31 H 1.09005 * 109.47110 * 60.00100 * 4 3 2 32 32 H 0.96998 * 119.99509 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47079 * 186.04777 * 13 2 1 34 34 H 1.08995 * 109.47390 * 306.04879 * 13 2 1 35 35 H 1.08004 * 119.96509 * 0.02563 * 15 14 13 36 36 H 1.07993 * 119.92826 * 180.23304 * 16 15 14 37 37 H 1.07998 * 119.96088 * 179.76501 * 17 16 15 38 38 H 1.08000 * 120.03371 * 179.97438 * 18 17 16 39 39 H 1.09007 * 110.66723 * 278.15496 * 21 20 19 40 40 H 1.08997 * 110.66972 * 41.28379 * 21 20 19 41 41 H 1.08999 * 110.72366 * 204.22584 * 22 21 20 42 42 H 1.09003 * 110.72125 * 80.94739 * 22 21 20 43 43 H 1.09000 * 110.30933 * 263.04082 * 23 22 21 44 44 H 1.08999 * 110.31204 * 140.87199 * 23 22 21 45 45 H 1.09002 * 109.91826 * 333.50888 * 24 20 19 46 46 H 1.08998 * 109.91941 * 94.80620 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1709 3.4646 -1.3180 6 1 2.7189 3.8326 -0.4633 7 6 1.9657 4.2818 -2.4094 8 7 1.2988 3.8334 -3.4505 9 14 2.6351 6.0258 -2.4094 10 1 4.1122 5.9890 -2.2614 11 1 2.2817 6.6916 -3.6888 12 1 2.0428 6.7832 -1.2777 13 6 1.9954 -0.7659 1.1376 14 6 1.6369 -2.2203 0.9729 15 6 0.5338 -2.7384 1.6228 16 6 0.2016 -4.0717 1.4688 17 6 0.9778 -4.8933 0.6715 18 6 2.0849 -4.3831 0.0231 19 6 2.4187 -3.0427 0.1718 20 7 3.5378 -2.5232 -0.4830 21 6 4.2721 -3.5902 -1.2099 22 6 5.1024 -2.8014 -2.2533 23 6 4.1414 -1.6654 -2.6727 24 6 3.1400 -1.5360 -1.5100 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3445 0.1082 30 1 2.0657 1.5016 -2.1491 31 1 0.5471 2.0846 -1.4266 32 1 1.1541 4.4085 -4.2181 33 1 3.0797 -0.6610 1.1756 34 1 1.5611 -0.3872 2.0628 35 1 -0.0723 -2.1005 2.2490 36 1 -0.6636 -4.4734 1.9751 37 1 0.7177 -5.9352 0.5564 38 1 2.6908 -5.0253 -0.5989 39 1 4.9267 -4.1375 -0.5315 40 1 3.5762 -4.2677 -1.7047 41 1 5.3492 -3.4327 -3.1069 42 1 6.0059 -2.3943 -1.7993 43 1 3.6206 -1.9308 -3.5927 44 1 4.6914 -0.7335 -2.8038 45 1 2.1316 -1.7527 -1.8625 46 1 3.1825 -0.5295 -1.0937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053144015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:05 Heat of formation + Delta-G solvation = 43.641137 kcal Electronic energy + Delta-G solvation = -23770.584632 eV Core-core repulsion = 20660.184328 eV Total energy + Delta-G solvation = -3110.400304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.42444 -37.68669 -36.89931 -33.22526 -32.50794 -31.61148 -29.40746 -28.63588 -28.31715 -26.72946 -25.11912 -23.14210 -22.80118 -21.21868 -20.46876 -20.05920 -19.66851 -17.21080 -16.45651 -15.98416 -15.45653 -15.29353 -14.84549 -14.55483 -14.36311 -14.31812 -13.80711 -13.29348 -13.02713 -12.84415 -12.49672 -12.40750 -12.13215 -12.03354 -11.76362 -11.63259 -11.24457 -11.13399 -11.10539 -10.94474 -10.92388 -10.80368 -10.71004 -10.53127 -10.28014 -9.83338 -9.38739 -9.23705 -9.13524 -8.70222 -8.31905 -7.76988 -7.59476 -5.98692 -4.00856 1.46785 1.49791 3.33914 3.38451 3.40776 3.76026 4.14259 4.44806 4.72815 4.77208 4.83002 4.93498 5.00883 5.13762 5.17551 5.37317 5.38111 5.45641 5.54374 5.67835 5.70517 5.76186 5.81378 5.88471 5.96914 5.98337 6.00305 6.07288 6.10100 6.24919 6.31795 6.42754 6.44060 6.47556 6.54326 6.57989 6.66342 6.78390 6.92241 6.99729 7.16530 7.49387 7.54558 7.59554 7.80591 7.90826 8.08855 8.44760 9.06187 9.62738 11.12461 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.004488 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.837461 B = 6236.997979 C = 7272.851809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.060 3.940 4 C 0.030 3.970 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.093 3.907 14 C -0.081 4.081 15 C -0.095 4.095 16 C -0.149 4.149 17 C -0.103 4.103 18 C -0.177 4.177 19 C 0.124 3.876 20 N -0.473 5.473 21 C 0.027 3.973 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.052 3.948 25 H 0.076 0.924 26 H 0.017 0.983 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.032 0.968 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -17.388 6.416 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C -0.067 4.067 4 C -0.007 4.007 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.034 4.034 14 C -0.084 4.084 15 C -0.114 4.114 16 C -0.167 4.167 17 C -0.122 4.122 18 C -0.197 4.197 19 C 0.026 3.974 20 N -0.188 5.188 21 C -0.100 4.100 22 C -0.161 4.161 23 C -0.175 4.175 24 C -0.073 4.073 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.386 -17.244 6.161 18.467 hybrid contribution -0.506 0.948 0.185 1.090 sum 1.880 -16.297 6.346 17.589 Atomic orbital electron populations 1.22408 0.88288 1.00698 1.01040 1.62354 1.07521 1.15498 1.40241 1.22395 0.98575 0.85168 1.00520 1.19078 0.96896 0.93934 0.90780 1.21156 1.35172 0.97863 1.01865 0.92912 1.24968 0.95284 0.98326 0.95577 1.69963 1.40795 1.36449 1.06018 0.86687 0.79470 0.84844 0.77159 1.20233 1.21321 1.20348 1.20973 1.01013 0.89101 0.92324 1.19524 0.95558 0.95629 0.97670 1.20950 0.96136 0.95248 0.99112 1.20972 1.00541 0.93987 1.01250 1.20910 0.94980 0.99234 0.97035 1.21374 0.99340 0.95875 1.03147 1.18877 0.90213 0.92391 0.95963 1.61925 1.18749 1.12245 1.25930 1.23444 0.96737 0.94037 0.95777 1.22484 0.98627 0.97144 0.97890 1.22512 0.97385 0.99228 0.98333 1.23253 0.96835 0.97919 0.89245 0.90549 0.96446 0.92472 0.96178 0.92035 0.95741 0.96535 0.93001 0.89498 0.94935 0.86376 0.86593 0.86608 0.85682 0.90184 0.92656 0.91277 0.90839 0.91735 0.90545 0.92797 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.06 60.06 0.54 0.95 16 2 N -0.53 -9.40 2.18 -244.37 -0.53 -9.93 16 3 C 0.06 1.23 4.13 -3.82 -0.02 1.22 16 4 C 0.03 0.77 4.90 -27.88 -0.14 0.63 16 5 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 6 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.09 1.46 4.08 -4.98 -0.02 1.44 16 14 C -0.08 -1.19 4.57 -104.43 -0.48 -1.66 16 15 C -0.10 -1.24 8.42 -39.61 -0.33 -1.57 16 16 C -0.15 -1.73 10.04 -39.54 -0.40 -2.13 16 17 C -0.10 -1.18 10.04 -39.61 -0.40 -1.58 16 18 C -0.18 -2.23 8.91 -39.38 -0.35 -2.58 16 19 C 0.12 1.79 5.23 -83.79 -0.44 1.35 16 20 N -0.47 -6.81 4.68 -167.16 -0.78 -7.59 16 21 C 0.03 0.32 5.56 -1.90 -0.01 0.31 16 22 C -0.12 -1.41 7.06 -24.87 -0.18 -1.58 16 23 C -0.14 -1.90 6.93 -25.38 -0.18 -2.08 16 24 C 0.05 0.82 4.76 -2.75 -0.01 0.81 16 25 H 0.08 1.45 6.47 -51.93 -0.34 1.11 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.89 6.30 -51.93 -0.33 0.57 16 28 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.06 1.26 7.70 -51.93 -0.40 0.86 16 30 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.44 6.55 -51.93 -0.34 0.10 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 1.42 7.31 -51.93 -0.38 1.04 16 34 H 0.03 0.49 8.01 -51.93 -0.42 0.07 16 35 H 0.12 1.39 8.05 -52.48 -0.42 0.96 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.37 5.58 -52.49 -0.29 1.08 16 39 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.06 0.62 5.95 -51.93 -0.31 0.31 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.94 7.72 -51.93 -0.40 0.54 16 46 H 0.12 2.13 4.84 -51.93 -0.25 1.88 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -29.24 351.02 -10.76 -40.00 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.64 Total: 1.27 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.81 Total: -19.73 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.58 Total: -43.34 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.24 -10.76 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053144015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.641 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds