Wall clock time and date at job start Fri Apr 10 2020 19:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99866 * 2 1 4 4 C 1.53006 * 109.47209 * 293.95307 * 3 2 1 5 5 C 1.50694 * 109.47149 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00150 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99727 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00225 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47002 * 60.00073 * 9 7 5 11 11 H 1.48498 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46900 * 299.99867 * 9 7 5 13 13 C 1.46896 * 110.99943 * 123.95118 * 2 1 3 14 14 C 1.50697 * 109.46957 * 66.04846 * 13 2 1 15 15 C 1.38116 * 120.03829 * 262.47230 * 14 13 2 16 16 C 1.38271 * 120.07863 * 179.79021 * 15 14 13 17 17 C 1.38311 * 120.14545 * 0.46679 * 16 15 14 18 18 C 1.38082 * 120.07205 * 359.78732 * 17 16 15 19 19 C 1.38894 * 120.03963 * 82.74675 * 14 13 2 20 20 N 1.39680 * 120.07214 * 359.95950 * 19 14 13 21 21 C 1.48533 * 110.99814 * 176.37882 * 20 19 14 22 22 C 1.54934 * 103.22552 * 159.71753 * 21 20 19 23 23 C 1.54591 * 102.92390 * 322.58649 * 22 21 20 24 24 C 1.47901 * 110.99764 * 293.77305 * 20 19 14 25 25 H 1.09006 * 109.47046 * 60.00028 * 1 2 3 26 26 H 1.09001 * 109.47562 * 300.00334 * 1 2 3 27 27 H 1.08998 * 109.47504 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47499 * 53.95244 * 3 2 1 29 29 H 1.09002 * 109.47165 * 173.95850 * 3 2 1 30 30 H 1.08994 * 109.46838 * 300.00342 * 4 3 2 31 31 H 1.09005 * 109.47110 * 60.00100 * 4 3 2 32 32 H 0.96998 * 119.99509 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47079 * 186.04777 * 13 2 1 34 34 H 1.08995 * 109.47390 * 306.04879 * 13 2 1 35 35 H 1.08004 * 119.96509 * 0.02563 * 15 14 13 36 36 H 1.07993 * 119.92826 * 180.23304 * 16 15 14 37 37 H 1.07998 * 119.96088 * 179.76501 * 17 16 15 38 38 H 1.08000 * 120.03371 * 179.97438 * 18 17 16 39 39 H 1.09007 * 110.66723 * 278.15496 * 21 20 19 40 40 H 1.08997 * 110.66972 * 41.28379 * 21 20 19 41 41 H 1.08999 * 110.72366 * 204.22584 * 22 21 20 42 42 H 1.09003 * 110.72125 * 80.94739 * 22 21 20 43 43 H 1.09000 * 110.30933 * 263.04082 * 23 22 21 44 44 H 1.08999 * 110.31204 * 140.87199 * 23 22 21 45 45 H 1.09002 * 109.91826 * 333.50888 * 24 20 19 46 46 H 1.08998 * 109.91941 * 94.80620 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1709 3.4646 -1.3180 6 1 2.7189 3.8326 -0.4633 7 6 1.9657 4.2818 -2.4094 8 7 1.2988 3.8334 -3.4505 9 14 2.6351 6.0258 -2.4094 10 1 4.1122 5.9890 -2.2614 11 1 2.2817 6.6916 -3.6888 12 1 2.0428 6.7832 -1.2777 13 6 1.9954 -0.7659 1.1376 14 6 1.6369 -2.2203 0.9729 15 6 0.5338 -2.7384 1.6228 16 6 0.2016 -4.0717 1.4688 17 6 0.9778 -4.8933 0.6715 18 6 2.0849 -4.3831 0.0231 19 6 2.4187 -3.0427 0.1718 20 7 3.5378 -2.5232 -0.4830 21 6 4.2721 -3.5902 -1.2099 22 6 5.1024 -2.8014 -2.2533 23 6 4.1414 -1.6654 -2.6727 24 6 3.1400 -1.5360 -1.5100 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3445 0.1082 30 1 2.0657 1.5016 -2.1491 31 1 0.5471 2.0846 -1.4266 32 1 1.1541 4.4085 -4.2181 33 1 3.0797 -0.6610 1.1756 34 1 1.5611 -0.3872 2.0628 35 1 -0.0723 -2.1005 2.2490 36 1 -0.6636 -4.4734 1.9751 37 1 0.7177 -5.9352 0.5564 38 1 2.6908 -5.0253 -0.5989 39 1 4.9267 -4.1375 -0.5315 40 1 3.5762 -4.2677 -1.7047 41 1 5.3492 -3.4327 -3.1069 42 1 6.0059 -2.3943 -1.7993 43 1 3.6206 -1.9308 -3.5927 44 1 4.6914 -0.7335 -2.8038 45 1 2.1316 -1.7527 -1.8625 46 1 3.1825 -0.5295 -1.0937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053144015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:04 Heat of formation + Delta-G solvation = 28.800131 kcal Electronic energy + Delta-G solvation = -23771.228186 eV Core-core repulsion = 20660.184328 eV Total energy + Delta-G solvation = -3111.043858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48136 -38.83050 -38.24246 -35.22369 -33.58417 -32.95267 -31.10354 -29.74617 -29.39523 -28.06837 -26.89845 -24.42440 -24.12856 -22.41262 -21.78547 -21.33031 -20.91190 -18.57949 -18.19784 -17.16372 -16.64313 -16.42118 -16.34627 -16.32384 -15.74792 -15.40417 -15.06641 -14.47116 -14.35443 -14.22078 -13.94280 -13.82033 -13.53548 -13.27234 -13.03176 -12.86217 -12.81552 -12.69678 -12.57875 -12.47344 -12.14153 -12.05706 -11.99988 -11.79372 -11.77015 -11.33602 -11.30784 -11.21738 -10.51301 -10.30338 -9.71724 -9.10510 -8.75116 -8.17721 -6.28377 0.47868 0.51433 1.40713 1.43350 1.51156 2.41404 2.74254 3.07254 3.15824 3.36966 3.76264 3.82949 3.90791 4.00479 4.13559 4.23653 4.30657 4.35899 4.42710 4.45298 4.51604 4.63188 4.66921 4.68427 4.73273 4.79436 4.85727 4.94816 4.97192 5.01497 5.03288 5.09281 5.11152 5.20494 5.28216 5.41905 5.48181 5.53656 5.57903 5.66470 5.72519 5.81029 5.93332 6.11057 6.12219 6.27421 6.35997 6.49756 6.88366 7.40301 8.93811 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.004488 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.837461 B = 6236.997979 C = 7272.851809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.534 5.534 3 C 0.080 3.920 4 C 0.043 3.957 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.102 3.898 14 C -0.103 4.103 15 C -0.102 4.102 16 C -0.147 4.147 17 C -0.100 4.100 18 C -0.181 4.181 19 C 0.103 3.897 20 N -0.482 5.482 21 C 0.028 3.972 22 C -0.114 4.114 23 C -0.139 4.139 24 C 0.062 3.938 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.060 0.940 30 H -0.005 1.005 31 H -0.008 1.008 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -18.994 7.405 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.258 5.258 3 C -0.048 4.048 4 C 0.006 3.994 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.025 4.025 14 C -0.105 4.105 15 C -0.121 4.121 16 C -0.166 4.166 17 C -0.119 4.119 18 C -0.201 4.201 19 C 0.005 3.995 20 N -0.199 5.199 21 C -0.098 4.098 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.063 4.063 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.745 -18.870 7.171 20.372 hybrid contribution -0.670 1.349 -0.109 1.510 sum 2.076 -17.521 7.062 19.004 Atomic orbital electron populations 1.22310 0.87862 1.01421 1.00045 1.62255 1.07864 1.13698 1.41994 1.21992 0.98522 0.86621 0.97619 1.18857 0.94860 0.93441 0.92289 1.21585 1.35320 0.99086 1.02207 0.92450 1.25882 0.95407 1.02911 0.95061 1.70102 1.41976 1.38175 1.06717 0.85560 0.79126 0.79260 0.77452 1.19198 1.20853 1.19349 1.20864 1.00214 0.89968 0.91418 1.19517 0.96976 0.94754 0.99282 1.21133 0.95653 0.96303 0.99045 1.21324 1.01135 0.93313 1.00797 1.21310 0.94032 1.00697 0.95813 1.21631 0.99956 0.95209 1.03339 1.19077 0.90597 0.93399 0.96431 1.61880 1.19210 1.13054 1.25706 1.23542 0.96795 0.93558 0.95949 1.22470 0.97775 0.96231 0.98688 1.22499 0.97612 0.99864 0.97791 1.22940 0.96124 0.97089 0.90168 0.93204 0.95658 0.90796 0.96353 0.92106 0.98630 0.98937 0.92857 0.90613 0.94270 0.85445 0.83924 0.83605 0.84011 0.88636 0.91719 0.88866 0.90707 0.91533 0.92017 0.95169 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 9.06 127.69 1.16 2.27 16 2 N -0.53 -19.63 2.18 -927.05 -2.02 -21.65 16 3 C 0.08 3.43 4.13 86.30 0.36 3.78 16 4 C 0.04 2.29 4.90 29.85 0.15 2.44 16 5 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 6 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 9 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.10 3.25 4.08 85.56 0.35 3.60 16 14 C -0.10 -2.95 4.57 -19.74 -0.09 -3.04 16 15 C -0.10 -2.47 8.42 22.25 0.19 -2.29 16 16 C -0.15 -2.98 10.04 22.30 0.22 -2.75 16 17 C -0.10 -1.96 10.04 22.25 0.22 -1.74 16 18 C -0.18 -4.15 8.91 22.40 0.20 -3.95 16 19 C 0.10 2.89 5.23 38.21 0.20 3.09 16 20 N -0.48 -13.79 4.68 -682.78 -3.20 -16.99 16 21 C 0.03 0.61 5.56 86.65 0.48 1.09 16 22 C -0.11 -2.44 7.06 31.80 0.22 -2.22 16 23 C -0.14 -3.99 6.93 31.47 0.22 -3.77 16 24 C 0.06 2.05 4.76 86.45 0.41 2.46 16 25 H 0.05 1.99 6.47 -2.38 -0.02 1.98 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 2.32 6.30 -2.39 -0.02 2.30 16 28 H 0.02 0.78 8.12 -2.39 -0.02 0.77 16 29 H 0.06 2.60 7.70 -2.39 -0.02 2.58 16 30 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H -0.01 -0.44 6.55 -2.38 -0.02 -0.46 16 32 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.08 2.54 7.31 -2.39 -0.02 2.53 16 34 H 0.04 1.17 8.01 -2.39 -0.02 1.15 16 35 H 0.13 2.76 8.05 -2.91 -0.02 2.74 16 36 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.14 2.68 5.58 -2.91 -0.02 2.66 16 39 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.06 1.29 5.95 -2.39 -0.01 1.28 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.03 1.11 7.72 -2.39 -0.02 1.09 16 46 H 0.09 3.39 4.84 -2.39 -0.01 3.38 16 Total: -1.00 -64.71 351.02 3.02 -61.70 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.94 Total: 18.11 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 4.98 Total: -31.15 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -4.93 Total: -95.18 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.71 3.02 -61.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053144015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.497 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds