Wall clock time and date at job start Fri Apr 10 2020 19:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47258 * 2 1 4 4 H 1.09001 * 109.47497 * 54.11553 * 3 2 1 5 5 C 1.50697 * 109.47204 * 174.11706 * 3 2 1 6 6 H 1.07997 * 120.00275 * 116.31791 * 5 3 2 7 7 C 1.37876 * 120.00154 * 296.31031 * 5 3 2 8 8 N 1.31519 * 119.99756 * 353.04458 * 7 5 3 9 9 Si 1.86801 * 120.00491 * 173.03846 * 7 5 3 10 10 H 1.48498 * 109.47235 * 270.00745 * 9 7 5 11 11 H 1.48502 * 109.46557 * 30.00300 * 9 7 5 12 12 H 1.48501 * 109.47102 * 150.00073 * 9 7 5 13 13 N 1.46905 * 109.47476 * 294.11639 * 3 2 1 14 14 C 1.46900 * 111.00032 * 154.58413 * 13 3 2 15 15 H 1.08996 * 110.64580 * 38.24951 * 14 13 3 16 16 C 1.54600 * 110.72520 * 275.09697 * 14 13 3 17 17 C 1.53987 * 105.13841 * 219.68527 * 16 14 13 18 18 N 1.47902 * 107.06331 * 358.77489 * 17 16 14 19 19 C 1.46899 * 110.99899 * 145.84087 * 18 17 16 20 20 C 1.50700 * 109.47180 * 290.12755 * 19 18 17 21 21 C 1.38237 * 119.99944 * 269.72645 * 20 19 18 22 22 C 1.38236 * 119.99894 * 179.80925 * 21 20 19 23 23 C 1.38233 * 119.99972 * 0.42734 * 22 21 20 24 24 C 1.38243 * 120.00026 * 359.80759 * 23 22 21 25 25 C 1.38229 * 120.00034 * 90.00527 * 20 19 18 26 26 C 1.48737 * 105.93886 * 25.20230 * 18 17 16 27 27 H 1.09000 * 109.47476 * 186.09009 * 1 2 3 28 28 H 1.09005 * 109.46943 * 306.09070 * 1 2 3 29 29 H 1.08999 * 109.47565 * 66.09002 * 1 2 3 30 30 H 1.09001 * 109.46783 * 240.00258 * 2 1 3 31 31 H 1.08998 * 109.46772 * 120.00606 * 2 1 3 32 32 H 0.97004 * 120.00019 * 355.49081 * 8 7 5 33 33 H 1.00898 * 110.99598 * 30.62980 * 13 3 2 34 34 H 1.08996 * 110.30687 * 338.60637 * 16 14 13 35 35 H 1.09000 * 110.30550 * 100.66783 * 16 14 13 36 36 H 1.09002 * 109.91682 * 118.12781 * 17 16 14 37 37 H 1.09003 * 109.91698 * 239.22060 * 17 16 14 38 38 H 1.08991 * 109.47458 * 50.13171 * 19 18 17 39 39 H 1.09009 * 109.46914 * 170.13145 * 19 18 17 40 40 H 1.08004 * 120.00149 * 0.02562 * 21 20 19 41 41 H 1.07996 * 120.00223 * 180.20517 * 22 21 20 42 42 H 1.07999 * 120.00391 * 179.79042 * 23 22 21 43 43 H 1.07999 * 120.00085 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.99914 * 359.97438 * 25 20 19 45 45 H 1.08999 * 110.83663 * 202.57523 * 26 18 17 46 46 H 1.09000 * 110.58372 * 79.38136 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5932 1.9858 0.8326 5 6 3.5399 1.4449 0.1456 6 1 4.1591 1.8315 -0.6503 7 6 4.1218 0.9537 1.2950 8 7 3.3696 0.6103 2.3178 9 14 5.9783 0.7756 1.3996 10 1 6.3741 -0.5728 0.9197 11 1 6.6233 1.8113 0.5530 12 1 6.4134 0.9470 2.8091 13 7 1.6697 2.0928 -1.2641 14 6 1.5789 3.5497 -1.0997 15 1 2.3632 3.9110 -0.4346 16 6 0.1837 3.9548 -0.5711 17 6 -0.1786 5.2408 -1.3367 18 7 0.9639 5.5556 -2.2216 19 6 0.5050 6.1621 -3.4783 20 6 -0.2080 5.1241 -4.3061 21 6 0.5002 4.3559 -5.2112 22 6 -0.1531 3.4011 -5.9676 23 6 -1.5162 3.2205 -5.8254 24 6 -2.2253 3.9921 -4.9238 25 6 -1.5712 4.9442 -4.1645 26 6 1.6539 4.2622 -2.4735 27 1 -0.3634 -1.0218 0.1090 28 1 -0.3633 0.6054 0.8305 29 1 -0.3634 0.4165 -0.9394 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 2.4122 0.7634 2.2888 33 1 0.8068 1.7152 -1.6258 34 1 -0.5433 3.1708 -0.7830 35 1 0.2272 4.1500 0.5004 36 1 -1.0762 5.0775 -1.9331 37 1 -0.3436 6.0574 -0.6337 38 1 -0.1777 6.9826 -3.2577 39 1 1.3630 6.5424 -4.0328 40 1 1.5647 4.4993 -5.3247 41 1 0.4007 2.7986 -6.6724 42 1 -2.0273 2.4769 -6.4189 43 1 -3.2904 3.8513 -4.8130 44 1 -2.1253 5.5472 -3.4603 45 1 2.6911 4.4265 -2.7656 46 1 1.1252 3.6877 -3.2341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:08 Heat of formation + Delta-G solvation = 27.729011 kcal Electronic energy + Delta-G solvation = -23673.372750 eV Core-core repulsion = 20562.282444 eV Total energy + Delta-G solvation = -3111.090305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.14202 -38.20620 -36.17429 -33.41231 -31.81890 -31.14547 -30.79996 -29.20529 -27.81372 -25.86830 -24.67932 -22.94832 -22.63971 -21.73729 -20.41718 -20.06546 -19.75294 -16.88763 -16.66416 -15.90105 -15.83491 -15.26934 -15.07594 -14.46627 -13.96680 -13.72164 -13.66535 -13.53737 -13.39119 -12.90290 -12.59505 -12.51660 -12.22284 -12.13559 -11.70638 -11.45045 -11.35533 -11.25367 -11.14634 -11.01047 -10.82777 -10.68276 -10.44977 -10.24795 -10.05154 -9.91194 -9.74742 -8.96880 -8.81384 -8.62819 -8.29586 -8.26757 -7.24737 -6.24737 -3.95893 1.23614 1.30390 3.49136 3.51877 3.66687 3.68230 4.19801 4.59052 4.67875 4.72923 4.89477 4.94118 4.99835 5.05436 5.27226 5.33154 5.37977 5.39739 5.49355 5.56976 5.68971 5.75750 5.91181 5.92139 5.92583 5.96118 5.97970 5.99763 6.13073 6.19042 6.23861 6.34672 6.41445 6.46217 6.50298 6.62666 6.66044 6.83042 6.90035 6.93850 7.00199 7.16910 7.23727 7.43180 8.08711 8.18819 8.51054 8.73985 8.99079 9.73433 11.09535 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.004297 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.711410 B = 6514.335824 C = 6802.578102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.210 3.790 4 H -0.006 1.006 5 C -0.574 4.574 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.670 5.670 14 C 0.099 3.901 15 H 0.093 0.907 16 C -0.160 4.160 17 C 0.033 3.967 18 N -0.507 5.507 19 C 0.083 3.917 20 C -0.116 4.116 21 C -0.101 4.101 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.113 4.113 26 C 0.036 3.964 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.269 0.731 33 H 0.315 0.685 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 8.296 -13.611 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.102 3.898 4 H 0.011 0.989 5 C -0.613 4.613 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.299 5.299 14 C -0.013 4.013 15 H 0.111 0.889 16 C -0.201 4.201 17 C -0.096 4.096 18 N -0.229 5.229 19 C -0.046 4.046 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.132 4.132 26 C -0.092 4.092 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.099 0.901 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.426 8.166 -12.596 17.214 hybrid contribution -2.793 -0.068 -0.863 2.924 sum -11.219 8.098 -13.458 19.302 Atomic orbital electron populations 1.21888 0.99005 1.00077 0.99928 1.21835 0.91889 1.00742 1.02328 1.19255 0.96337 0.89161 0.85011 0.98888 1.22004 0.90885 1.44318 1.04045 0.92638 1.25735 1.06636 0.94047 0.92261 1.70773 1.07624 1.45565 1.31534 0.83560 0.74739 0.76381 0.75612 1.21592 1.21537 1.21352 1.60577 1.36179 1.01500 1.31678 1.22332 0.94780 0.89366 0.94804 0.88856 1.23173 0.99533 0.96715 1.00630 1.22883 0.93112 0.97667 0.95892 1.65120 1.21877 1.24674 1.11245 1.21380 0.98710 0.94829 0.89633 1.20619 0.94248 0.99454 0.97440 1.21111 0.99854 0.95730 0.95327 1.21162 0.94667 0.98214 0.99659 1.21139 0.94524 0.99462 0.98825 1.21120 0.99776 0.96453 0.96757 1.21065 0.94043 0.98865 0.99188 1.23458 0.99165 0.88321 0.98221 0.94013 0.93814 0.94167 0.92981 0.90747 0.92030 0.86666 0.92236 0.91455 0.93414 0.90940 0.90298 0.89765 0.85934 0.86053 0.86298 0.86334 0.86347 0.90116 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.64 37.16 0.36 -2.49 16 2 C -0.13 -2.97 5.19 -26.74 -0.14 -3.11 16 3 C 0.21 5.15 1.53 -68.87 -0.11 5.04 16 4 H -0.01 -0.17 7.10 -51.93 -0.37 -0.54 16 5 C -0.57 -16.00 8.49 -34.44 -0.29 -16.29 16 6 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 7 C 0.02 0.46 5.19 -17.82 -0.09 0.37 16 8 N -0.92 -27.25 12.77 55.43 0.71 -26.54 16 9 Si 1.07 25.51 29.91 -169.99 -5.08 20.43 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.67 -14.12 6.14 -99.01 -0.61 -14.73 16 14 C 0.10 1.89 3.13 -65.85 -0.21 1.69 16 15 H 0.09 2.09 7.77 -51.93 -0.40 1.69 16 16 C -0.16 -2.66 6.39 -25.38 -0.16 -2.82 16 17 C 0.03 0.46 6.46 -2.76 -0.02 0.44 16 18 N -0.51 -7.26 5.53 -231.72 -1.28 -8.55 16 19 C 0.08 0.96 5.69 -4.98 -0.03 0.94 16 20 C -0.12 -1.36 3.95 -104.63 -0.41 -1.78 16 21 C -0.10 -1.19 7.51 -39.58 -0.30 -1.49 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.11 -1.26 8.19 -39.59 -0.32 -1.58 16 26 C 0.04 0.59 5.79 -1.78 -0.01 0.58 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.69 6.68 -51.93 -0.35 0.34 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.91 6.16 -51.93 -0.32 1.59 16 32 H 0.27 7.94 6.16 -40.82 -0.25 7.68 16 33 H 0.32 6.20 6.10 -39.29 -0.24 5.96 16 34 H 0.06 0.98 7.63 -51.93 -0.40 0.58 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.61 4.86 -51.93 -0.25 0.36 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 39 H 0.08 0.92 8.08 -51.92 -0.42 0.50 16 40 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 1.17 7.16 -52.48 -0.38 0.80 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 0.96 4.87 -51.93 -0.25 0.71 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -29.59 352.47 -11.36 -40.94 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.48 Total: 8.73 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -2.92 Total: -25.59 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -1.18 Total: -49.82 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.59 -11.36 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.673 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds