Wall clock time and date at job start Fri Apr 10 2020 19:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46604 * 2 1 4 4 H 1.09005 * 109.46967 * 305.64795 * 3 2 1 5 5 C 1.50702 * 109.46832 * 185.65034 * 3 2 1 6 6 H 1.07995 * 119.99673 * 239.99914 * 5 3 2 7 7 C 1.37879 * 120.00028 * 60.00257 * 5 3 2 8 8 N 1.31516 * 120.00028 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99835 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47096 * 119.99619 * 9 7 5 12 12 H 1.48497 * 109.46881 * 239.99447 * 9 7 5 13 13 N 1.46897 * 109.47250 * 65.65041 * 3 2 1 14 14 C 1.46900 * 110.99735 * 205.64406 * 13 3 2 15 15 H 1.08995 * 110.35362 * 326.65207 * 14 13 3 16 16 C 1.54596 * 110.31473 * 88.79911 * 14 13 3 17 17 C 1.54931 * 102.92577 * 140.87039 * 16 14 13 18 18 N 1.48537 * 103.22753 * 322.58752 * 17 16 14 19 19 C 1.46902 * 111.00183 * 159.71756 * 18 17 16 20 20 C 1.50706 * 109.46749 * 52.60529 * 19 18 17 21 21 C 1.38229 * 119.99683 * 90.00189 * 20 19 18 22 22 C 1.38240 * 119.99795 * 180.27345 * 21 20 19 23 23 C 1.38240 * 119.99765 * 359.46758 * 22 21 20 24 24 C 1.38235 * 119.99559 * 0.55592 * 23 22 21 25 25 C 1.38234 * 119.99638 * 270.02063 * 20 19 18 26 26 C 1.47902 * 105.81771 * 39.20442 * 18 17 16 27 27 H 1.09005 * 109.46833 * 174.48944 * 1 2 3 28 28 H 1.08997 * 109.47194 * 294.48206 * 1 2 3 29 29 H 1.08996 * 109.47634 * 54.49038 * 1 2 3 30 30 H 1.09000 * 109.46938 * 240.00265 * 2 1 3 31 31 H 1.08994 * 109.47045 * 119.99459 * 2 1 3 32 32 H 0.97000 * 120.00093 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99825 * 329.59289 * 13 3 2 34 34 H 1.08997 * 110.72472 * 259.23038 * 16 14 13 35 35 H 1.09009 * 110.71848 * 22.33645 * 16 14 13 36 36 H 1.08996 * 110.67204 * 204.15792 * 17 16 14 37 37 H 1.09000 * 110.66565 * 81.02072 * 17 16 14 38 38 H 1.08998 * 109.46917 * 292.60318 * 19 18 17 39 39 H 1.09001 * 109.47256 * 172.60455 * 19 18 17 40 40 H 1.07999 * 120.00657 * 0.02562 * 21 20 19 41 41 H 1.08001 * 120.00400 * 179.72513 * 22 21 20 42 42 H 1.07996 * 119.99820 * 180.27317 * 23 22 21 43 43 H 1.08008 * 119.99499 * 179.72675 * 24 23 22 44 44 H 1.07994 * 120.00121 * 0.02562 * 25 20 19 45 45 H 1.08999 * 109.91780 * 94.02601 * 26 18 17 46 46 H 1.09005 * 109.91952 * 215.31541 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5404 1.4449 -0.1399 6 1 4.1539 1.8866 0.6314 7 6 4.1300 0.8833 -1.2526 8 7 3.3829 0.3450 -2.1916 9 14 5.9899 0.8856 -1.4256 10 1 6.5963 1.5463 -0.2419 11 1 6.4802 -0.5131 -1.5176 12 1 6.3717 1.6259 -2.6550 13 7 1.6647 2.0946 1.2618 14 6 1.5691 3.5508 1.0937 15 1 2.2996 3.8968 0.3624 16 6 0.1410 3.9478 0.6547 17 6 -0.1160 5.2523 1.4501 18 7 0.5381 4.9878 2.7572 19 6 0.8241 6.2422 3.4662 20 6 -0.4332 7.0687 3.5518 21 6 -1.2842 6.9224 4.6312 22 6 -2.4404 7.6764 4.7069 23 6 -2.7399 8.5846 3.7086 24 6 -1.8890 8.7304 2.6290 25 6 -0.7355 7.9727 2.5506 26 6 1.7868 4.2600 2.4432 27 1 -0.3633 -1.0230 -0.0987 28 1 -0.3633 0.4259 0.9352 29 1 -0.3634 0.5969 -0.8365 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7976 -0.0504 -2.9742 33 1 0.8023 1.7148 1.6225 34 1 0.1057 4.1370 -0.4181 35 1 -0.5766 3.1756 0.9327 36 1 -1.1852 5.4183 1.5818 37 1 0.3483 6.1038 0.9529 38 1 1.5890 6.7992 2.9250 39 1 1.1808 6.0183 4.4715 40 1 -1.0480 6.2162 5.4134 41 1 -3.1077 7.5590 5.5480 42 1 -3.6409 9.1768 3.7700 43 1 -2.1253 9.4368 1.8468 44 1 -0.0709 8.0864 1.7070 45 1 2.6163 4.9626 2.3639 46 1 1.9932 3.5240 3.2204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:16 Heat of formation + Delta-G solvation = 27.465980 kcal Electronic energy + Delta-G solvation = -22913.002554 eV Core-core repulsion = 19801.900843 eV Total energy + Delta-G solvation = -3111.101711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.78598 -38.40431 -35.90295 -33.30797 -31.84176 -31.03481 -30.70562 -29.45948 -27.56594 -26.08131 -24.84743 -22.76836 -22.65767 -21.67435 -20.45580 -19.87818 -19.55890 -16.87293 -16.23415 -15.85880 -15.73140 -15.23743 -15.06746 -14.51116 -14.17574 -13.78875 -13.58470 -13.43646 -13.15638 -12.84274 -12.66233 -12.55707 -12.03715 -11.86947 -11.77150 -11.52278 -11.33929 -11.17026 -11.03480 -10.92949 -10.88633 -10.72149 -10.57479 -10.24987 -9.93614 -9.65851 -9.52911 -9.04927 -9.01576 -8.89063 -8.33653 -8.19515 -7.16208 -5.95185 -3.99246 1.21668 1.29314 3.31552 3.39743 3.44852 3.62102 4.32767 4.45961 4.62474 4.74401 4.87217 4.97288 5.06152 5.16617 5.18322 5.30990 5.36975 5.39286 5.54936 5.56617 5.62743 5.79234 5.89629 5.93576 6.00774 6.03961 6.18846 6.20019 6.25531 6.30720 6.32649 6.38284 6.44539 6.52142 6.56398 6.59605 6.87765 6.88530 7.10077 7.12544 7.19574 7.23585 7.55778 7.81167 7.95155 8.35805 8.43343 8.80874 9.09636 9.65926 11.09961 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.003296 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.014325 B = 8492.018552 C = 8950.498448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.677 5.677 14 C 0.091 3.909 15 H 0.085 0.915 16 C -0.152 4.152 17 C 0.041 3.959 18 N -0.511 5.511 19 C 0.083 3.917 20 C -0.075 4.075 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.043 3.957 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.258 0.742 33 H 0.321 0.679 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.040 0.960 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 13.936 9.957 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.022 4.022 15 H 0.103 0.897 16 C -0.192 4.192 17 C -0.087 4.087 18 N -0.235 5.235 19 C -0.045 4.045 20 C -0.076 4.076 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.085 4.085 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.059 0.941 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.083 13.527 10.368 19.803 hybrid contribution 0.627 0.568 -1.278 1.533 sum -9.457 14.095 9.090 19.255 Atomic orbital electron populations 1.21879 0.99599 0.99640 0.99553 1.21765 0.91235 1.00442 1.02996 1.19160 0.95282 0.89925 0.84449 0.98042 1.21280 0.91403 1.36280 1.04094 0.92073 1.24963 0.98005 0.95726 0.95918 1.69886 1.34520 1.39632 1.09593 0.86519 0.85956 0.77598 0.77792 1.19804 1.21149 1.21319 1.60722 1.36654 1.01060 1.32317 1.22267 0.94413 0.90704 0.94785 0.89673 1.23283 0.99265 0.97172 0.99479 1.23151 0.99338 0.96906 0.89317 1.64953 1.22089 1.17527 1.18942 1.21262 0.93139 0.89785 1.00331 1.19830 0.96741 0.96273 0.94711 1.21055 0.94097 0.98665 0.98031 1.21150 0.97251 0.96684 0.99013 1.21126 0.99542 0.98960 0.94697 1.21105 0.94887 0.99750 0.98292 1.21114 0.97475 0.96327 0.98297 1.23045 0.89361 0.97032 0.99046 0.94473 0.94560 0.93953 0.88336 0.94099 0.93199 0.86011 0.91503 0.91147 0.90803 0.94157 0.93908 0.89897 0.85887 0.86222 0.86384 0.86271 0.86360 0.94124 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.65 37.16 0.36 -2.54 16 2 C -0.13 -2.96 5.36 -26.73 -0.14 -3.10 16 3 C 0.22 5.35 1.88 -68.86 -0.13 5.22 16 4 H 0.00 0.05 7.81 -51.93 -0.41 -0.35 16 5 C -0.49 -13.42 8.57 -34.44 -0.29 -13.72 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.38 11.29 55.43 0.63 -24.76 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.68 -14.11 6.00 -99.53 -0.60 -14.70 16 14 C 0.09 1.66 3.07 -66.36 -0.20 1.46 16 15 H 0.09 1.77 7.71 -51.93 -0.40 1.37 16 16 C -0.15 -2.46 6.67 -24.87 -0.17 -2.63 16 17 C 0.04 0.57 4.97 -1.90 -0.01 0.57 16 18 N -0.51 -7.25 5.39 -231.89 -1.25 -8.50 16 19 C 0.08 1.00 5.19 -4.97 -0.03 0.97 16 20 C -0.08 -0.86 4.59 -104.62 -0.48 -1.34 16 21 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.11 -1.22 8.34 -39.58 -0.33 -1.55 16 26 C 0.04 0.69 6.50 -2.75 -0.02 0.67 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.32 6.31 5.96 -39.29 -0.23 6.08 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.16 7.57 -51.92 -0.39 0.77 16 36 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 37 H 0.04 0.54 7.09 -51.93 -0.37 0.17 16 38 H 0.04 0.51 7.76 -51.93 -0.40 0.11 16 39 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.12 1.19 7.38 -52.49 -0.39 0.81 16 45 H 0.04 0.62 7.57 -51.93 -0.39 0.23 16 46 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -28.15 359.54 -11.74 -39.89 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.80 Total: 6.99 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.11 Total: -20.75 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -1.22 Total: -47.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.15 -11.74 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.357 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds