Wall clock time and date at job start Fri Apr 10 2020 19:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46604 * 2 1 4 4 H 1.09005 * 109.46967 * 305.64795 * 3 2 1 5 5 C 1.50702 * 109.46832 * 185.65034 * 3 2 1 6 6 H 1.07995 * 119.99673 * 239.99914 * 5 3 2 7 7 C 1.37879 * 120.00028 * 60.00257 * 5 3 2 8 8 N 1.31516 * 120.00028 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99835 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47096 * 119.99619 * 9 7 5 12 12 H 1.48497 * 109.46881 * 239.99447 * 9 7 5 13 13 N 1.46897 * 109.47250 * 65.65041 * 3 2 1 14 14 C 1.46900 * 110.99735 * 205.64406 * 13 3 2 15 15 H 1.08995 * 110.35362 * 326.65207 * 14 13 3 16 16 C 1.54596 * 110.31473 * 88.79911 * 14 13 3 17 17 C 1.54931 * 102.92577 * 140.87039 * 16 14 13 18 18 N 1.48537 * 103.22753 * 322.58752 * 17 16 14 19 19 C 1.46902 * 111.00183 * 159.71756 * 18 17 16 20 20 C 1.50706 * 109.46749 * 52.60529 * 19 18 17 21 21 C 1.38229 * 119.99683 * 90.00189 * 20 19 18 22 22 C 1.38240 * 119.99795 * 180.27345 * 21 20 19 23 23 C 1.38240 * 119.99765 * 359.46758 * 22 21 20 24 24 C 1.38235 * 119.99559 * 0.55592 * 23 22 21 25 25 C 1.38234 * 119.99638 * 270.02063 * 20 19 18 26 26 C 1.47902 * 105.81771 * 39.20442 * 18 17 16 27 27 H 1.09005 * 109.46833 * 174.48944 * 1 2 3 28 28 H 1.08997 * 109.47194 * 294.48206 * 1 2 3 29 29 H 1.08996 * 109.47634 * 54.49038 * 1 2 3 30 30 H 1.09000 * 109.46938 * 240.00265 * 2 1 3 31 31 H 1.08994 * 109.47045 * 119.99459 * 2 1 3 32 32 H 0.97000 * 120.00093 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99825 * 329.59289 * 13 3 2 34 34 H 1.08997 * 110.72472 * 259.23038 * 16 14 13 35 35 H 1.09009 * 110.71848 * 22.33645 * 16 14 13 36 36 H 1.08996 * 110.67204 * 204.15792 * 17 16 14 37 37 H 1.09000 * 110.66565 * 81.02072 * 17 16 14 38 38 H 1.08998 * 109.46917 * 292.60318 * 19 18 17 39 39 H 1.09001 * 109.47256 * 172.60455 * 19 18 17 40 40 H 1.07999 * 120.00657 * 0.02562 * 21 20 19 41 41 H 1.08001 * 120.00400 * 179.72513 * 22 21 20 42 42 H 1.07996 * 119.99820 * 180.27317 * 23 22 21 43 43 H 1.08008 * 119.99499 * 179.72675 * 24 23 22 44 44 H 1.07994 * 120.00121 * 0.02562 * 25 20 19 45 45 H 1.08999 * 109.91780 * 94.02601 * 26 18 17 46 46 H 1.09005 * 109.91952 * 215.31541 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5404 1.4449 -0.1399 6 1 4.1539 1.8866 0.6314 7 6 4.1300 0.8833 -1.2526 8 7 3.3829 0.3450 -2.1916 9 14 5.9899 0.8856 -1.4256 10 1 6.5963 1.5463 -0.2419 11 1 6.4802 -0.5131 -1.5176 12 1 6.3717 1.6259 -2.6550 13 7 1.6647 2.0946 1.2618 14 6 1.5691 3.5508 1.0937 15 1 2.2996 3.8968 0.3624 16 6 0.1410 3.9478 0.6547 17 6 -0.1160 5.2523 1.4501 18 7 0.5381 4.9878 2.7572 19 6 0.8241 6.2422 3.4662 20 6 -0.4332 7.0687 3.5518 21 6 -1.2842 6.9224 4.6312 22 6 -2.4404 7.6764 4.7069 23 6 -2.7399 8.5846 3.7086 24 6 -1.8890 8.7304 2.6290 25 6 -0.7355 7.9727 2.5506 26 6 1.7868 4.2600 2.4432 27 1 -0.3633 -1.0230 -0.0987 28 1 -0.3633 0.4259 0.9352 29 1 -0.3634 0.5969 -0.8365 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7976 -0.0504 -2.9742 33 1 0.8023 1.7148 1.6225 34 1 0.1057 4.1370 -0.4181 35 1 -0.5766 3.1756 0.9327 36 1 -1.1852 5.4183 1.5818 37 1 0.3483 6.1038 0.9529 38 1 1.5890 6.7992 2.9250 39 1 1.1808 6.0183 4.4715 40 1 -1.0480 6.2162 5.4134 41 1 -3.1077 7.5590 5.5480 42 1 -3.6409 9.1768 3.7700 43 1 -2.1253 9.4368 1.8468 44 1 -0.0709 8.0864 1.7070 45 1 2.6163 4.9626 2.3639 46 1 1.9932 3.5240 3.2204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:15 Heat of formation + Delta-G solvation = 11.329456 kcal Electronic energy + Delta-G solvation = -22913.702287 eV Core-core repulsion = 19801.900843 eV Total energy + Delta-G solvation = -3111.801443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76975 -39.53686 -37.55000 -34.76972 -33.60023 -32.07843 -31.74917 -30.68692 -29.12700 -27.73725 -26.05178 -24.52909 -23.51292 -22.62234 -21.52587 -21.45744 -21.28168 -18.29575 -17.68459 -17.10863 -17.01141 -16.51379 -16.09026 -15.95590 -15.64119 -15.26379 -14.74638 -14.66368 -14.29169 -14.12090 -13.98962 -13.64581 -13.58253 -13.23523 -13.02715 -12.98846 -12.81604 -12.74950 -12.52097 -12.49986 -12.23235 -11.94576 -11.78722 -11.78108 -11.69611 -11.52567 -11.27357 -10.98791 -10.42501 -9.76953 -9.72351 -9.30379 -8.92342 -8.05521 -6.17423 0.45141 0.54932 1.39535 1.42077 1.53580 2.44278 2.80189 3.19014 3.25217 3.53310 3.79335 3.81925 3.96107 4.00187 4.18955 4.25908 4.33290 4.40394 4.44408 4.51319 4.56855 4.58863 4.65009 4.68944 4.73232 4.78176 4.81597 4.91115 5.00131 5.08972 5.11333 5.14990 5.20530 5.22563 5.29882 5.38822 5.59268 5.63848 5.66210 5.73860 5.77991 5.87000 5.95490 6.07420 6.16677 6.39512 6.56627 6.97587 7.03783 7.51902 8.97393 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.003296 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.014325 B = 8492.018552 C = 8950.498448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.030 1.030 5 C -0.510 4.510 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.677 5.677 14 C 0.087 3.913 15 H 0.055 0.945 16 C -0.146 4.146 17 C 0.054 3.946 18 N -0.512 5.512 19 C 0.084 3.916 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.125 4.125 26 C 0.054 3.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.259 0.741 33 H 0.330 0.670 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.045 0.955 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 15.067 11.079 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.121 3.879 4 H -0.012 1.012 5 C -0.549 4.549 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.308 5.308 14 C -0.024 4.024 15 H 0.073 0.927 16 C -0.186 4.186 17 C -0.074 4.074 18 N -0.237 5.237 19 C -0.043 4.043 20 C -0.091 4.091 21 C -0.131 4.131 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.074 4.074 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.138 0.862 45 H 0.063 0.937 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.185 14.673 11.505 21.743 hybrid contribution 0.924 0.273 -1.603 1.870 sum -10.262 14.945 9.903 20.657 Atomic orbital electron populations 1.21736 0.96328 1.01016 1.00398 1.21599 0.94176 0.99169 1.01093 1.18890 0.93758 0.90469 0.84828 1.01217 1.21531 0.92990 1.36342 1.03992 0.93335 1.25668 1.02123 0.95436 0.95666 1.70009 1.36057 1.40031 1.09898 0.85573 0.81028 0.77667 0.77740 1.19548 1.20646 1.20832 1.60628 1.37336 1.02428 1.30425 1.22236 0.95135 0.89356 0.95714 0.92709 1.23169 0.97527 0.98415 0.99454 1.23044 0.99816 0.95688 0.88878 1.64937 1.20894 1.18929 1.18901 1.21277 0.93897 0.88844 1.00272 1.19807 0.96750 0.96925 0.95589 1.21224 0.94579 0.99201 0.98049 1.21447 0.97082 0.96252 0.99769 1.21473 1.00140 0.98732 0.94147 1.21388 0.94478 0.99761 0.99015 1.21235 0.98147 0.96678 0.98330 1.22825 0.90528 0.96960 0.97065 0.92547 0.92514 0.94513 0.91484 0.94602 0.93148 0.85098 0.92162 0.91162 0.90016 0.93471 0.93802 0.89207 0.85455 0.84196 0.84050 0.84481 0.86246 0.93690 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.65 71.98 0.69 -4.52 16 2 C -0.12 -5.79 5.36 30.60 0.16 -5.63 16 3 C 0.23 11.47 1.88 44.17 0.08 11.56 16 4 H -0.03 -1.66 7.81 -2.38 -0.02 -1.68 16 5 C -0.51 -28.55 8.57 25.60 0.22 -28.33 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.50 5.29 84.65 0.45 0.95 16 8 N -0.92 -53.15 11.29 21.45 0.24 -52.91 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.68 -28.56 6.00 -468.81 -2.81 -31.37 16 14 C 0.09 3.26 3.07 45.79 0.14 3.40 16 15 H 0.05 2.37 7.71 -2.39 -0.02 2.35 16 16 C -0.15 -4.69 6.67 31.80 0.21 -4.47 16 17 C 0.05 1.45 4.97 86.65 0.43 1.88 16 18 N -0.51 -13.97 5.39 -887.55 -4.78 -18.75 16 19 C 0.08 1.93 5.19 85.56 0.44 2.38 16 20 C -0.09 -1.93 4.59 -19.87 -0.09 -2.02 16 21 C -0.11 -2.20 9.70 22.27 0.22 -1.98 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 23 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -2.49 8.34 22.27 0.19 -2.31 16 26 C 0.05 1.72 6.50 86.45 0.56 2.28 16 27 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.06 1.91 6.65 -2.39 -0.02 1.89 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 3.63 5.94 -2.39 -0.01 3.62 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.33 12.80 5.96 -89.69 -0.53 12.27 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.26 7.57 -2.38 -0.02 2.24 16 36 H 0.08 2.12 7.73 -2.39 -0.02 2.10 16 37 H 0.05 1.21 7.09 -2.39 -0.02 1.20 16 38 H 0.04 0.99 7.76 -2.39 -0.02 0.98 16 39 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 40 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 41 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.12 2.26 7.38 -2.91 -0.02 2.24 16 45 H 0.04 1.37 7.57 -2.39 -0.02 1.35 16 46 H 0.08 2.77 7.93 -2.38 -0.02 2.75 16 Total: -1.00 -60.89 359.54 -0.54 -61.44 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.40 Total: 27.50 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 4.38 Total: -32.44 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -7.35 Total: -103.03 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -60.89 -0.54 -61.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.765 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds