Wall clock time and date at job start Fri Apr 10 2020 19:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47287 * 2 1 4 4 H 1.09004 * 109.47113 * 56.01214 * 3 2 1 5 5 C 1.50695 * 109.47345 * 176.01363 * 3 2 1 6 6 H 1.07999 * 119.99741 * 119.99893 * 5 3 2 7 7 C 1.37876 * 120.00099 * 300.00313 * 5 3 2 8 8 N 1.31515 * 120.00231 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47293 * 89.99481 * 9 7 5 11 11 H 1.48495 * 109.46859 * 209.99726 * 9 7 5 12 12 H 1.48501 * 109.47030 * 329.99605 * 9 7 5 13 13 N 1.46898 * 109.46778 * 296.01736 * 3 2 1 14 14 C 1.46903 * 111.00017 * 105.84053 * 13 3 2 15 15 C 1.50701 * 109.47103 * 85.04889 * 14 13 3 16 16 C 1.38124 * 120.03507 * 263.38158 * 15 14 13 17 17 C 1.38264 * 120.07877 * 179.74666 * 16 15 14 18 18 C 1.38310 * 120.14600 * 0.55668 * 17 16 15 19 19 C 1.38090 * 120.07314 * 359.69562 * 18 17 16 20 20 C 1.38885 * 120.03949 * 83.65986 * 15 14 13 21 21 N 1.39670 * 120.07921 * 359.95370 * 20 15 14 22 22 C 1.48532 * 111.00519 * 176.35682 * 21 20 15 23 23 C 1.54936 * 103.22783 * 159.72180 * 22 21 20 24 24 C 1.54596 * 102.92094 * 322.58881 * 23 22 21 25 25 C 1.47907 * 110.99881 * 293.75801 * 21 20 15 26 26 H 1.09000 * 109.47200 * 180.63998 * 1 2 3 27 27 H 1.08997 * 109.46660 * 60.64522 * 1 2 3 28 28 H 1.08994 * 109.47546 * 300.64668 * 1 2 3 29 29 H 1.09003 * 109.46784 * 119.99752 * 2 1 3 30 30 H 1.09002 * 109.47299 * 239.99388 * 2 1 3 31 31 H 0.96994 * 120.00146 * 180.02562 * 8 7 5 32 32 H 1.00894 * 111.00149 * 341.88397 * 13 3 2 33 33 H 1.09000 * 109.46907 * 205.04599 * 14 13 3 34 34 H 1.08993 * 109.47156 * 325.04264 * 14 13 3 35 35 H 1.08004 * 119.96510 * 0.02645 * 16 15 14 36 36 H 1.07997 * 119.92992 * 180.27604 * 17 16 15 37 37 H 1.08000 * 119.96465 * 179.72798 * 18 17 16 38 38 H 1.07994 * 120.03538 * 180.02562 * 19 18 17 39 39 H 1.09001 * 110.66649 * 278.15962 * 22 21 20 40 40 H 1.09002 * 110.66286 * 41.28919 * 22 21 20 41 41 H 1.08997 * 110.72444 * 204.22868 * 23 22 21 42 42 H 1.09000 * 110.72140 * 80.94829 * 23 22 21 43 43 H 1.09006 * 110.30662 * 263.04281 * 24 23 22 44 44 H 1.09003 * 110.30923 * 140.87598 * 24 23 22 45 45 H 1.08994 * 109.91630 * 333.50479 * 25 21 20 46 46 H 1.09002 * 109.91764 * 94.80183 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6196 1.9765 0.8521 5 6 3.5438 1.4436 0.0988 6 1 4.1360 1.8928 -0.6847 7 6 4.1635 0.8712 1.1893 8 7 3.4423 0.3246 2.1436 9 14 6.0275 0.8720 1.3114 10 1 6.4771 2.1008 2.0136 11 1 6.4743 -0.3235 2.0704 12 1 6.6129 0.8395 -0.0530 13 7 1.6305 2.1066 -1.2446 14 6 0.5351 3.0543 -0.9999 15 6 1.1052 4.3778 -0.5586 16 6 1.1856 4.6820 0.7863 17 6 1.7133 5.8938 1.1923 18 6 2.1516 6.8100 0.2535 19 6 2.0692 6.5144 -1.0929 20 6 1.5448 5.2953 -1.5040 21 7 1.4605 4.9930 -2.8650 22 6 1.9024 6.1432 -3.6943 23 6 2.2450 5.4879 -5.0558 24 6 2.8798 4.1407 -4.6410 25 6 2.3609 3.8733 -3.2160 26 1 -0.3633 -1.0276 0.0115 27 1 -0.3632 0.5038 -0.8957 28 1 -0.3634 0.5238 0.8841 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.8782 -0.0778 2.9110 32 1 1.3731 1.4301 -1.9476 33 1 -0.0372 3.1929 -1.9171 34 1 -0.1176 2.6617 -0.2202 35 1 0.8402 3.9706 1.5219 36 1 1.7792 6.1273 2.2446 37 1 2.5592 7.7575 0.5737 38 1 2.4120 7.2301 -1.8254 39 1 1.0961 6.8678 -3.8081 40 1 2.7851 6.6134 -3.2607 41 1 2.9601 6.0974 -5.6082 42 1 1.3415 5.3239 -5.6431 43 1 3.9671 4.2195 -4.6390 44 1 2.5585 3.3473 -5.3158 45 1 3.1966 3.8358 -2.5174 46 1 1.8106 2.9326 -3.1918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:18 Heat of formation + Delta-G solvation = 40.511715 kcal Electronic energy + Delta-G solvation = -24230.995802 eV Core-core repulsion = 21120.459796 eV Total energy + Delta-G solvation = -3110.536006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09247 -37.41303 -36.36188 -32.96863 -32.24126 -31.41158 -29.69989 -28.63479 -28.00839 -26.84856 -24.15828 -22.91742 -22.50977 -21.13368 -20.36310 -19.96302 -19.29006 -16.94842 -16.34277 -15.81952 -15.17106 -14.97136 -14.80526 -14.55561 -14.06701 -13.65719 -13.38482 -13.02362 -12.85730 -12.63134 -12.46561 -12.29367 -11.94379 -11.71158 -11.56022 -11.44279 -11.16578 -11.12422 -10.94575 -10.79491 -10.67330 -10.57150 -10.46475 -10.26487 -9.95650 -9.73785 -9.68014 -9.01971 -8.97820 -8.29210 -8.24781 -7.43727 -7.17072 -5.92564 -3.94118 1.88980 1.92057 3.34688 3.41079 3.44915 4.10108 4.40634 4.50131 4.80588 4.89453 5.12529 5.28859 5.33521 5.36802 5.44712 5.56601 5.59440 5.75194 5.81229 5.81755 5.93289 5.96937 6.02891 6.06135 6.13316 6.13680 6.17097 6.22666 6.34876 6.39596 6.48821 6.53475 6.67512 6.77633 6.81054 6.94228 7.00862 7.09255 7.22009 7.23742 7.42301 7.44258 7.78513 7.80231 7.96252 8.35644 8.58856 8.67126 9.12670 9.70223 11.13510 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.005922 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.972862 B = 4726.882488 C = 4844.282964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.218 3.782 4 H 0.029 0.971 5 C -0.482 4.482 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.099 3.901 15 C -0.061 4.061 16 C -0.082 4.082 17 C -0.143 4.143 18 C -0.110 4.110 19 C -0.179 4.179 20 C 0.111 3.889 21 N -0.472 5.472 22 C 0.027 3.973 23 C -0.123 4.123 24 C -0.137 4.137 25 C 0.053 3.947 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.258 0.742 32 H 0.323 0.677 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 9.493 -9.086 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.111 3.889 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.305 5.305 14 C -0.030 4.030 15 C -0.063 4.063 16 C -0.101 4.101 17 C -0.161 4.161 18 C -0.129 4.129 19 C -0.199 4.199 20 C 0.014 3.986 21 N -0.188 5.188 22 C -0.100 4.100 23 C -0.161 4.161 24 C -0.175 4.175 25 C -0.071 4.071 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.889 9.685 -9.045 14.125 hybrid contribution 1.143 -0.423 0.670 1.390 sum -3.747 9.262 -8.375 13.037 Atomic orbital electron populations 1.21888 0.99581 0.99377 0.99719 1.22203 0.91354 1.02013 1.02984 1.19264 0.95148 0.88528 0.85985 0.95314 1.21188 0.91166 1.34838 1.04867 0.92273 1.24918 0.97798 0.95859 0.95953 1.69858 1.34618 1.39564 1.09880 0.86622 0.86342 0.77223 0.77929 1.20982 1.21520 1.20067 1.60910 1.36068 1.20849 1.12683 1.20758 0.92474 0.90454 0.99343 1.19544 0.99341 0.95463 0.91985 1.20969 0.97981 0.95929 0.95203 1.20971 1.01510 0.94680 0.98971 1.20820 1.00206 0.99003 0.92856 1.21241 1.03760 0.98564 0.96326 1.18749 0.96778 0.94006 0.89096 1.61938 1.48602 1.06099 1.02180 1.23412 0.99544 0.93933 0.93086 1.22469 1.00636 0.96470 0.96536 1.22530 1.00172 0.97255 0.97531 1.23127 0.95575 0.94291 0.94138 0.94705 0.94753 0.93874 0.88296 0.94585 0.93250 0.85946 0.91457 0.94683 0.86260 0.86842 0.87008 0.86216 0.90284 0.92630 0.91422 0.91038 0.91779 0.91266 0.91668 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.91 37.16 0.33 -2.47 16 2 C -0.15 -3.31 5.05 -26.73 -0.14 -3.44 16 3 C 0.22 5.15 2.00 -68.87 -0.14 5.01 16 4 H 0.03 0.76 6.44 -51.93 -0.33 0.42 16 5 C -0.48 -12.97 8.84 -34.44 -0.30 -13.28 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 8 N -0.90 -25.33 11.30 55.43 0.63 -24.71 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 N -0.67 -13.30 3.51 -109.22 -0.38 -13.68 16 14 C 0.10 1.79 4.15 -4.97 -0.02 1.77 16 15 C -0.06 -1.13 5.23 -104.42 -0.55 -1.67 16 16 C -0.08 -1.53 9.16 -39.61 -0.36 -1.89 16 17 C -0.14 -2.40 10.04 -39.55 -0.40 -2.79 16 18 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 19 C -0.18 -2.82 8.91 -39.38 -0.35 -3.18 16 20 C 0.11 1.91 5.23 -83.79 -0.44 1.48 16 21 N -0.47 -7.25 4.66 -167.16 -0.78 -8.03 16 22 C 0.03 0.34 5.56 -1.90 -0.01 0.33 16 23 C -0.12 -1.35 7.06 -24.87 -0.18 -1.52 16 24 C -0.14 -1.72 6.93 -25.38 -0.18 -1.89 16 25 C 0.05 0.84 4.78 -2.75 -0.01 0.83 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 2.57 5.97 -51.93 -0.31 2.26 16 30 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.32 5.97 7.19 -39.29 -0.28 5.68 16 33 H 0.07 1.13 7.44 -51.93 -0.39 0.75 16 34 H 0.03 0.65 6.64 -51.93 -0.34 0.31 16 35 H 0.12 2.27 7.60 -52.48 -0.40 1.87 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.12 1.62 5.58 -52.49 -0.29 1.33 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.70 5.95 -51.93 -0.31 0.39 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.24 7.73 -51.93 -0.40 0.84 16 46 H 0.10 1.63 5.38 -51.93 -0.28 1.35 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -27.99 347.45 -11.01 -39.00 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.46 Total: 8.96 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.23 Total: -23.42 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.54 Total: -46.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.99 -11.01 -39.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.511 kcal (2) G-P(sol) polarization free energy of solvation -27.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds