Wall clock time and date at job start Fri Apr 10 2020 19:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47287 * 2 1 4 4 H 1.09004 * 109.47113 * 56.01214 * 3 2 1 5 5 C 1.50695 * 109.47345 * 176.01363 * 3 2 1 6 6 H 1.07999 * 119.99741 * 119.99893 * 5 3 2 7 7 C 1.37876 * 120.00099 * 300.00313 * 5 3 2 8 8 N 1.31515 * 120.00231 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47293 * 89.99481 * 9 7 5 11 11 H 1.48495 * 109.46859 * 209.99726 * 9 7 5 12 12 H 1.48501 * 109.47030 * 329.99605 * 9 7 5 13 13 N 1.46898 * 109.46778 * 296.01736 * 3 2 1 14 14 C 1.46903 * 111.00017 * 105.84053 * 13 3 2 15 15 C 1.50701 * 109.47103 * 85.04889 * 14 13 3 16 16 C 1.38124 * 120.03507 * 263.38158 * 15 14 13 17 17 C 1.38264 * 120.07877 * 179.74666 * 16 15 14 18 18 C 1.38310 * 120.14600 * 0.55668 * 17 16 15 19 19 C 1.38090 * 120.07314 * 359.69562 * 18 17 16 20 20 C 1.38885 * 120.03949 * 83.65986 * 15 14 13 21 21 N 1.39670 * 120.07921 * 359.95370 * 20 15 14 22 22 C 1.48532 * 111.00519 * 176.35682 * 21 20 15 23 23 C 1.54936 * 103.22783 * 159.72180 * 22 21 20 24 24 C 1.54596 * 102.92094 * 322.58881 * 23 22 21 25 25 C 1.47907 * 110.99881 * 293.75801 * 21 20 15 26 26 H 1.09000 * 109.47200 * 180.63998 * 1 2 3 27 27 H 1.08997 * 109.46660 * 60.64522 * 1 2 3 28 28 H 1.08994 * 109.47546 * 300.64668 * 1 2 3 29 29 H 1.09003 * 109.46784 * 119.99752 * 2 1 3 30 30 H 1.09002 * 109.47299 * 239.99388 * 2 1 3 31 31 H 0.96994 * 120.00146 * 180.02562 * 8 7 5 32 32 H 1.00894 * 111.00149 * 341.88397 * 13 3 2 33 33 H 1.09000 * 109.46907 * 205.04599 * 14 13 3 34 34 H 1.08993 * 109.47156 * 325.04264 * 14 13 3 35 35 H 1.08004 * 119.96510 * 0.02645 * 16 15 14 36 36 H 1.07997 * 119.92992 * 180.27604 * 17 16 15 37 37 H 1.08000 * 119.96465 * 179.72798 * 18 17 16 38 38 H 1.07994 * 120.03538 * 180.02562 * 19 18 17 39 39 H 1.09001 * 110.66649 * 278.15962 * 22 21 20 40 40 H 1.09002 * 110.66286 * 41.28919 * 22 21 20 41 41 H 1.08997 * 110.72444 * 204.22868 * 23 22 21 42 42 H 1.09000 * 110.72140 * 80.94829 * 23 22 21 43 43 H 1.09006 * 110.30662 * 263.04281 * 24 23 22 44 44 H 1.09003 * 110.30923 * 140.87598 * 24 23 22 45 45 H 1.08994 * 109.91630 * 333.50479 * 25 21 20 46 46 H 1.09002 * 109.91764 * 94.80183 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6196 1.9765 0.8521 5 6 3.5438 1.4436 0.0988 6 1 4.1360 1.8928 -0.6847 7 6 4.1635 0.8712 1.1893 8 7 3.4423 0.3246 2.1436 9 14 6.0275 0.8720 1.3114 10 1 6.4771 2.1008 2.0136 11 1 6.4743 -0.3235 2.0704 12 1 6.6129 0.8395 -0.0530 13 7 1.6305 2.1066 -1.2446 14 6 0.5351 3.0543 -0.9999 15 6 1.1052 4.3778 -0.5586 16 6 1.1856 4.6820 0.7863 17 6 1.7133 5.8938 1.1923 18 6 2.1516 6.8100 0.2535 19 6 2.0692 6.5144 -1.0929 20 6 1.5448 5.2953 -1.5040 21 7 1.4605 4.9930 -2.8650 22 6 1.9024 6.1432 -3.6943 23 6 2.2450 5.4879 -5.0558 24 6 2.8798 4.1407 -4.6410 25 6 2.3609 3.8733 -3.2160 26 1 -0.3633 -1.0276 0.0115 27 1 -0.3632 0.5038 -0.8957 28 1 -0.3634 0.5238 0.8841 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.8782 -0.0778 2.9110 32 1 1.3731 1.4301 -1.9476 33 1 -0.0372 3.1929 -1.9171 34 1 -0.1176 2.6617 -0.2202 35 1 0.8402 3.9706 1.5219 36 1 1.7792 6.1273 2.2446 37 1 2.5592 7.7575 0.5737 38 1 2.4120 7.2301 -1.8254 39 1 1.0961 6.8678 -3.8081 40 1 2.7851 6.6134 -3.2607 41 1 2.9601 6.0974 -5.6082 42 1 1.3415 5.3239 -5.6431 43 1 3.9671 4.2195 -4.6390 44 1 2.5585 3.3473 -5.3158 45 1 3.1966 3.8358 -2.5174 46 1 1.8106 2.9326 -3.1918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:18 Heat of formation + Delta-G solvation = 25.922655 kcal Electronic energy + Delta-G solvation = -24231.628431 eV Core-core repulsion = 21120.459796 eV Total energy + Delta-G solvation = -3111.168635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33290 -38.67341 -38.01263 -34.74233 -33.51589 -33.07997 -31.20593 -29.72814 -29.33973 -28.61502 -25.83610 -24.26162 -24.07336 -22.35904 -21.86837 -21.24630 -20.74022 -18.39729 -18.11244 -17.07160 -16.67850 -16.48159 -16.29496 -16.12248 -15.37825 -15.21345 -14.91909 -14.56317 -14.17262 -13.92790 -13.83419 -13.68977 -13.40346 -13.17331 -13.06826 -12.91710 -12.76000 -12.66561 -12.49693 -12.12812 -12.05593 -12.00084 -11.87289 -11.70603 -11.57399 -11.50338 -11.27549 -10.94907 -10.38052 -10.25050 -9.61240 -8.85390 -8.70757 -8.02789 -6.11132 0.56619 0.58815 1.38503 1.40148 1.49403 2.44943 2.82786 3.20517 3.23873 3.79873 3.87632 3.91332 4.02098 4.13375 4.20933 4.29358 4.44096 4.47123 4.49434 4.56205 4.60290 4.71180 4.72114 4.75154 4.80503 4.83966 5.00611 5.02582 5.07534 5.09047 5.16275 5.23223 5.27104 5.36009 5.38990 5.42740 5.51910 5.60086 5.64608 5.76319 5.79035 5.93428 5.96726 6.17291 6.40489 6.53641 6.73601 6.94695 7.02766 7.57109 9.00648 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.005922 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.972862 B = 4726.882488 C = 4844.282964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.230 3.770 4 H -0.002 1.002 5 C -0.494 4.494 6 H 0.045 0.955 7 C 0.011 3.989 8 N -0.921 5.921 9 Si 0.944 3.056 10 H -0.284 1.284 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.110 3.890 15 C -0.087 4.087 16 C -0.107 4.107 17 C -0.154 4.154 18 C -0.107 4.107 19 C -0.181 4.181 20 C 0.103 3.897 21 N -0.476 5.476 22 C 0.023 3.977 23 C -0.113 4.113 24 C -0.134 4.134 25 C 0.059 3.941 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.257 0.743 32 H 0.331 0.669 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.024 0.976 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 11.059 -11.075 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.122 3.878 4 H 0.016 0.984 5 C -0.533 4.533 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.771 3.229 10 H -0.210 1.210 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.299 5.299 14 C -0.020 4.020 15 C -0.090 4.090 16 C -0.126 4.126 17 C -0.173 4.173 18 C -0.125 4.125 19 C -0.201 4.201 20 C 0.005 3.995 21 N -0.192 5.192 22 C -0.103 4.103 23 C -0.150 4.150 24 C -0.172 4.172 25 C -0.066 4.066 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.118 0.882 36 H 0.147 0.853 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.043 0.957 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.709 11.255 -11.053 16.463 hybrid contribution 1.072 -0.854 1.275 1.872 sum -3.636 10.402 -9.778 14.732 Atomic orbital electron populations 1.21736 0.96575 1.00759 1.00248 1.22022 0.94028 1.00693 1.01254 1.18940 0.93381 0.89047 0.86480 0.98448 1.21452 0.92985 1.34421 1.04450 0.93698 1.25559 1.01464 0.95813 0.95839 1.69988 1.35880 1.40152 1.10182 0.85770 0.82056 0.77120 0.77930 1.21048 1.20979 1.19617 1.60774 1.37310 1.20741 1.11078 1.20675 0.91730 0.89987 0.99569 1.19672 1.00784 0.96074 0.92422 1.21014 0.99541 0.96795 0.95241 1.21228 1.01428 0.94314 1.00332 1.21215 0.98975 0.99801 0.92541 1.21618 1.02813 0.98487 0.97178 1.18944 0.96492 0.94272 0.89802 1.61916 1.48526 1.07205 1.01570 1.23564 1.00073 0.93336 0.93357 1.22465 1.01471 0.95293 0.95817 1.22510 1.00277 0.98918 0.95492 1.22940 0.94076 0.94308 0.95273 0.92813 0.92786 0.94774 0.91684 0.94507 0.93393 0.85070 0.89994 0.95636 0.88160 0.85330 0.83694 0.83540 0.88830 0.92519 0.89125 0.90063 0.91720 0.90085 0.95717 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.91 71.98 0.64 -4.46 16 2 C -0.14 -6.50 5.05 30.59 0.15 -6.34 16 3 C 0.23 11.24 2.00 44.17 0.09 11.33 16 4 H 0.00 -0.13 6.44 -2.38 -0.02 -0.14 16 5 C -0.49 -27.43 8.84 25.60 0.23 -27.20 16 6 H 0.04 2.57 7.81 -2.91 -0.02 2.54 16 7 C 0.01 0.60 5.30 84.65 0.45 1.05 16 8 N -0.92 -53.42 11.30 21.45 0.24 -53.17 16 9 Si 0.94 45.12 29.54 68.60 2.03 47.14 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.67 -26.95 3.51 -499.47 -1.75 -28.70 16 14 C 0.11 4.04 4.15 85.56 0.36 4.39 16 15 C -0.09 -3.30 5.23 -19.74 -0.10 -3.40 16 16 C -0.11 -4.15 9.16 22.25 0.20 -3.94 16 17 C -0.15 -5.18 10.04 22.29 0.22 -4.95 16 18 C -0.11 -3.13 10.04 22.25 0.22 -2.90 16 19 C -0.18 -5.39 8.91 22.40 0.20 -5.19 16 20 C 0.10 3.47 5.23 38.21 0.20 3.67 16 21 N -0.48 -13.97 4.66 -682.79 -3.18 -17.15 16 22 C 0.02 0.51 5.56 86.65 0.48 1.00 16 23 C -0.11 -2.08 7.06 31.80 0.22 -1.85 16 24 C -0.13 -3.09 6.93 31.47 0.22 -2.87 16 25 C 0.06 1.83 4.78 86.44 0.41 2.24 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.79 6.72 -2.39 -0.02 1.78 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 3.48 5.97 -2.39 -0.01 3.47 16 30 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.33 12.27 7.19 -89.70 -0.64 11.63 16 33 H 0.08 2.73 7.44 -2.39 -0.02 2.72 16 34 H 0.03 0.98 6.64 -2.39 -0.02 0.96 16 35 H 0.10 4.14 7.60 -2.91 -0.02 4.12 16 36 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.15 3.51 5.58 -2.91 -0.02 3.49 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.26 5.95 -2.39 -0.01 1.24 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.02 0.95 7.73 -2.39 -0.02 0.93 16 46 H 0.09 2.88 5.38 -2.39 -0.01 2.87 16 Total: -1.00 -62.09 347.45 1.85 -60.24 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.32 Total: 31.07 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 4.20 Total: -39.43 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -4.69 Total: -99.03 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -62.09 1.85 -60.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.164 kcal (2) G-P(sol) polarization free energy of solvation -62.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds