Wall clock time and date at job start Fri Apr 10 2020 19:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46598 * 2 1 4 4 H 1.08998 * 109.47381 * 303.53539 * 3 2 1 5 5 C 1.50705 * 109.46792 * 183.53456 * 3 2 1 6 6 H 1.08000 * 119.99793 * 240.00227 * 5 3 2 7 7 C 1.37873 * 120.00004 * 59.99981 * 5 3 2 8 8 N 1.31517 * 119.99871 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46990 * 60.00534 * 9 7 5 11 11 H 1.48505 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47304 * 300.00302 * 9 7 5 13 13 N 1.46901 * 109.47179 * 63.53828 * 3 2 1 14 14 C 1.46895 * 110.99960 * 250.04128 * 13 3 2 15 15 C 1.50703 * 109.47280 * 182.85005 * 14 13 3 16 16 C 1.38135 * 120.03649 * 258.86504 * 15 14 13 17 17 C 1.38265 * 120.07067 * 179.97438 * 16 15 14 18 18 C 1.38306 * 120.14929 * 359.72195 * 17 16 15 19 19 C 1.38080 * 120.07910 * 0.55469 * 18 17 16 20 20 C 1.38887 * 120.04003 * 78.83532 * 15 14 13 21 21 N 1.39676 * 120.07423 * 0.05106 * 20 15 14 22 22 C 1.48531 * 111.00115 * 127.22057 * 21 20 15 23 23 C 1.54940 * 103.22921 * 159.72364 * 22 21 20 24 24 C 1.54599 * 102.91728 * 322.58516 * 23 22 21 25 25 C 1.47896 * 111.00083 * 244.62006 * 21 20 15 26 26 H 1.08998 * 109.46967 * 56.61356 * 1 2 3 27 27 H 1.09005 * 109.46779 * 176.60171 * 1 2 3 28 28 H 1.08991 * 109.47453 * 296.60756 * 1 2 3 29 29 H 1.08998 * 109.47207 * 240.00440 * 2 1 3 30 30 H 1.08999 * 109.46802 * 119.99559 * 2 1 3 31 31 H 0.97001 * 119.99932 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00418 * 126.08588 * 13 3 2 33 33 H 1.09000 * 109.47132 * 62.84883 * 14 13 3 34 34 H 1.08998 * 109.47129 * 302.84871 * 14 13 3 35 35 H 1.07999 * 119.96226 * 359.95460 * 16 15 14 36 36 H 1.07998 * 119.91983 * 179.97438 * 17 16 15 37 37 H 1.08009 * 119.96030 * 180.27433 * 18 17 16 38 38 H 1.07993 * 120.03600 * 179.71843 * 19 18 17 39 39 H 1.09002 * 110.67045 * 278.15776 * 22 21 20 40 40 H 1.08995 * 110.66757 * 41.28877 * 22 21 20 41 41 H 1.08992 * 110.72714 * 204.23014 * 23 22 21 42 42 H 1.09002 * 110.72381 * 80.94002 * 23 22 21 43 43 H 1.08993 * 110.31331 * 263.03891 * 24 23 22 44 44 H 1.09008 * 110.30677 * 140.87297 * 24 23 22 45 45 H 1.08999 * 109.91572 * 333.50756 * 25 21 20 46 46 H 1.09002 * 109.92160 * 94.79861 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6258 1.9744 -0.8566 5 6 3.5444 1.4435 -0.0876 6 1 4.1308 1.8948 0.6991 7 6 4.1722 0.8683 -1.1720 8 7 3.4580 0.3193 -2.1302 9 14 6.0370 0.8701 -1.2810 10 1 6.6017 0.1460 -0.1139 11 1 6.4602 0.1959 -2.5346 12 1 6.5315 2.2703 -1.2813 13 7 1.6212 2.1099 1.2399 14 6 0.5958 3.1266 0.9701 15 6 0.2427 3.8364 2.2518 16 6 -0.9114 3.5007 2.9327 17 6 -1.2358 4.1511 4.1089 18 6 -0.4038 5.1354 4.6107 19 6 0.7484 5.4798 3.9322 20 6 1.0774 4.8283 2.7500 21 7 2.2449 5.1705 2.0638 22 6 2.3065 6.6335 1.8148 23 6 3.8133 6.8861 1.5572 24 6 4.5004 5.9242 2.5535 25 6 3.4450 4.8470 2.8653 26 1 -0.3633 0.5655 -0.8581 27 1 -0.3633 -1.0259 -0.0609 28 1 -0.3634 0.4602 0.9187 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8997 -0.0851 -2.8934 32 1 2.4127 2.5129 1.7188 33 1 -0.2942 2.6461 0.5638 34 1 0.9803 3.8481 0.2493 35 1 -1.5611 2.7296 2.5457 36 1 -2.1389 3.8870 4.6391 37 1 -0.6579 5.6384 5.5321 38 1 1.3952 6.2516 4.3222 39 1 1.7164 6.8998 0.9379 40 1 1.9679 7.1873 2.6904 41 1 4.0742 7.9211 1.7780 42 1 4.0772 6.6313 0.5307 43 1 4.7778 6.4565 3.4633 44 1 5.3800 5.4709 2.0964 45 1 3.1984 4.8650 3.9269 46 1 3.8241 3.8639 2.5862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:21 Heat of formation + Delta-G solvation = 27.666159 kcal Electronic energy + Delta-G solvation = -23841.370369 eV Core-core repulsion = 20730.277338 eV Total energy + Delta-G solvation = -3111.093031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18980 -37.64649 -36.02825 -33.04177 -32.31489 -31.33895 -29.92583 -28.79207 -28.31617 -26.63129 -24.03983 -23.09045 -22.41752 -21.02819 -20.76095 -20.16955 -19.22606 -17.17229 -16.54900 -15.99768 -15.33874 -15.04473 -14.69029 -14.19761 -13.98369 -13.70119 -13.67012 -13.30211 -12.86302 -12.79635 -12.39467 -12.13240 -12.06307 -11.91986 -11.75084 -11.30726 -11.19827 -11.16188 -11.09167 -10.93056 -10.74196 -10.71464 -10.61301 -10.46251 -10.10947 -9.57008 -9.39644 -8.79050 -8.60584 -8.43344 -8.30939 -8.25289 -7.03744 -5.94216 -4.01266 1.46896 1.59685 3.33581 3.38234 3.40505 3.89229 4.05359 4.45910 4.72756 4.87488 5.01500 5.04094 5.09059 5.20947 5.32655 5.34503 5.51462 5.56458 5.61137 5.76761 5.83834 5.86255 5.88350 5.93209 6.05996 6.15661 6.20435 6.24260 6.30780 6.45443 6.53621 6.55118 6.61809 6.66146 6.74731 6.89150 6.92909 7.09944 7.16443 7.27223 7.57998 7.62629 7.69106 7.85870 8.10838 8.35817 8.51789 8.82862 9.13320 9.63785 11.10130 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.006144 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.811441 B = 4556.057033 C = 6219.449490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.012 0.988 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.680 5.680 14 C 0.107 3.893 15 C -0.041 4.041 16 C -0.102 4.102 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.153 4.153 20 C 0.085 3.915 21 N -0.473 5.473 22 C 0.038 3.962 23 C -0.123 4.123 24 C -0.130 4.130 25 C 0.042 3.958 26 H 0.034 0.966 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.260 0.740 32 H 0.333 0.667 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 11.693 10.491 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.030 0.970 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.022 4.022 15 C -0.043 4.043 16 C -0.121 4.121 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.173 4.173 20 C -0.010 4.010 21 N -0.194 5.194 22 C -0.088 4.088 23 C -0.161 4.161 24 C -0.168 4.168 25 C -0.085 4.085 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.273 10.797 9.954 15.603 hybrid contribution 1.525 1.092 0.309 1.901 sum -3.748 11.889 10.263 16.147 Atomic orbital electron populations 1.21771 0.99659 0.98442 0.99839 1.21521 0.91489 0.99673 1.01564 1.19099 0.93545 0.90875 0.85407 0.96995 1.21476 0.91633 1.37189 1.05655 0.92687 1.24895 0.97919 0.95266 0.95673 1.69882 1.34877 1.38249 1.09702 0.86688 0.86121 0.78085 0.77243 1.20342 1.21382 1.20427 1.60922 1.14996 1.28707 1.26487 1.20779 0.96885 0.93079 0.91460 1.20054 0.92929 0.94112 0.97174 1.21052 0.96856 0.99186 0.94992 1.21098 0.99650 0.97016 0.96632 1.20878 0.95081 0.98540 0.99698 1.21513 0.98286 1.01255 0.96251 1.18870 0.92967 0.96760 0.92415 1.62358 0.99996 1.14956 1.42118 1.23325 0.97192 0.87568 1.00715 1.22475 0.94241 0.98708 1.00656 1.22399 0.98798 0.96576 0.99064 1.22984 0.89568 1.00506 0.95398 0.94699 0.95584 0.93668 0.89496 0.94755 0.92991 0.84867 0.91909 0.94135 0.85796 0.86450 0.86747 0.86811 0.90063 0.93595 0.91311 0.90313 0.91855 0.90614 0.93634 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.08 37.16 0.34 -2.59 16 2 C -0.10 -2.56 5.44 -26.73 -0.15 -2.71 16 3 C 0.22 5.52 2.20 -68.86 -0.15 5.37 16 4 H 0.01 0.34 7.54 -51.93 -0.39 -0.05 16 5 C -0.52 -14.22 8.61 -34.44 -0.30 -14.51 16 6 H 0.05 1.48 7.35 -52.49 -0.39 1.10 16 7 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.89 -25.41 11.30 55.43 0.63 -24.79 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.68 -14.81 5.92 -109.22 -0.65 -15.45 16 14 C 0.11 2.07 4.89 -4.98 -0.02 2.04 16 15 C -0.04 -0.69 5.39 -104.42 -0.56 -1.25 16 16 C -0.10 -1.49 9.66 -39.61 -0.38 -1.87 16 17 C -0.13 -1.59 10.04 -39.55 -0.40 -1.98 16 18 C -0.12 -1.51 10.04 -39.61 -0.40 -1.91 16 19 C -0.15 -2.04 7.99 -39.38 -0.31 -2.36 16 20 C 0.08 1.31 4.74 -83.79 -0.40 0.91 16 21 N -0.47 -7.28 4.17 -167.17 -0.70 -7.98 16 22 C 0.04 0.49 6.39 -1.90 -0.01 0.48 16 23 C -0.12 -1.44 7.06 -24.87 -0.18 -1.61 16 24 C -0.13 -1.57 6.93 -25.37 -0.18 -1.75 16 25 C 0.04 0.60 6.34 -2.76 -0.02 0.58 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.90 7.17 -51.93 -0.37 0.53 16 29 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.33 7.38 6.30 -39.29 -0.25 7.14 16 33 H 0.06 1.19 6.90 -51.93 -0.36 0.84 16 34 H 0.04 0.85 7.78 -51.93 -0.40 0.45 16 35 H 0.12 1.69 8.03 -52.49 -0.42 1.27 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.11 1.35 7.00 -52.49 -0.37 0.98 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.53 6.36 -51.93 -0.33 0.20 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 45 H 0.05 0.62 7.01 -51.93 -0.36 0.25 16 46 H 0.09 1.48 7.22 -51.93 -0.38 1.10 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -28.50 356.54 -11.26 -39.77 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.69 Total: 8.26 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.21 Total: -21.48 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.72 Total: -48.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.50 -11.26 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.434 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds