Wall clock time and date at job start Fri Apr 10 2020 19:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46598 * 2 1 4 4 H 1.08998 * 109.47381 * 303.53539 * 3 2 1 5 5 C 1.50705 * 109.46792 * 183.53456 * 3 2 1 6 6 H 1.08000 * 119.99793 * 240.00227 * 5 3 2 7 7 C 1.37873 * 120.00004 * 59.99981 * 5 3 2 8 8 N 1.31517 * 119.99871 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00061 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46990 * 60.00534 * 9 7 5 11 11 H 1.48505 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47304 * 300.00302 * 9 7 5 13 13 N 1.46901 * 109.47179 * 63.53828 * 3 2 1 14 14 C 1.46895 * 110.99960 * 250.04128 * 13 3 2 15 15 C 1.50703 * 109.47280 * 182.85005 * 14 13 3 16 16 C 1.38135 * 120.03649 * 258.86504 * 15 14 13 17 17 C 1.38265 * 120.07067 * 179.97438 * 16 15 14 18 18 C 1.38306 * 120.14929 * 359.72195 * 17 16 15 19 19 C 1.38080 * 120.07910 * 0.55469 * 18 17 16 20 20 C 1.38887 * 120.04003 * 78.83532 * 15 14 13 21 21 N 1.39676 * 120.07423 * 0.05106 * 20 15 14 22 22 C 1.48531 * 111.00115 * 127.22057 * 21 20 15 23 23 C 1.54940 * 103.22921 * 159.72364 * 22 21 20 24 24 C 1.54599 * 102.91728 * 322.58516 * 23 22 21 25 25 C 1.47896 * 111.00083 * 244.62006 * 21 20 15 26 26 H 1.08998 * 109.46967 * 56.61356 * 1 2 3 27 27 H 1.09005 * 109.46779 * 176.60171 * 1 2 3 28 28 H 1.08991 * 109.47453 * 296.60756 * 1 2 3 29 29 H 1.08998 * 109.47207 * 240.00440 * 2 1 3 30 30 H 1.08999 * 109.46802 * 119.99559 * 2 1 3 31 31 H 0.97001 * 119.99932 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00418 * 126.08588 * 13 3 2 33 33 H 1.09000 * 109.47132 * 62.84883 * 14 13 3 34 34 H 1.08998 * 109.47129 * 302.84871 * 14 13 3 35 35 H 1.07999 * 119.96226 * 359.95460 * 16 15 14 36 36 H 1.07998 * 119.91983 * 179.97438 * 17 16 15 37 37 H 1.08009 * 119.96030 * 180.27433 * 18 17 16 38 38 H 1.07993 * 120.03600 * 179.71843 * 19 18 17 39 39 H 1.09002 * 110.67045 * 278.15776 * 22 21 20 40 40 H 1.08995 * 110.66757 * 41.28877 * 22 21 20 41 41 H 1.08992 * 110.72714 * 204.23014 * 23 22 21 42 42 H 1.09002 * 110.72381 * 80.94002 * 23 22 21 43 43 H 1.08993 * 110.31331 * 263.03891 * 24 23 22 44 44 H 1.09008 * 110.30677 * 140.87297 * 24 23 22 45 45 H 1.08999 * 109.91572 * 333.50756 * 25 21 20 46 46 H 1.09002 * 109.92160 * 94.79861 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6258 1.9744 -0.8566 5 6 3.5444 1.4435 -0.0876 6 1 4.1308 1.8948 0.6991 7 6 4.1722 0.8683 -1.1720 8 7 3.4580 0.3193 -2.1302 9 14 6.0370 0.8701 -1.2810 10 1 6.6017 0.1460 -0.1139 11 1 6.4602 0.1959 -2.5346 12 1 6.5315 2.2703 -1.2813 13 7 1.6212 2.1099 1.2399 14 6 0.5958 3.1266 0.9701 15 6 0.2427 3.8364 2.2518 16 6 -0.9114 3.5007 2.9327 17 6 -1.2358 4.1511 4.1089 18 6 -0.4038 5.1354 4.6107 19 6 0.7484 5.4798 3.9322 20 6 1.0774 4.8283 2.7500 21 7 2.2449 5.1705 2.0638 22 6 2.3065 6.6335 1.8148 23 6 3.8133 6.8861 1.5572 24 6 4.5004 5.9242 2.5535 25 6 3.4450 4.8470 2.8653 26 1 -0.3633 0.5655 -0.8581 27 1 -0.3633 -1.0259 -0.0609 28 1 -0.3634 0.4602 0.9187 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8997 -0.0851 -2.8934 32 1 2.4127 2.5129 1.7188 33 1 -0.2942 2.6461 0.5638 34 1 0.9803 3.8481 0.2493 35 1 -1.5611 2.7296 2.5457 36 1 -2.1389 3.8870 4.6391 37 1 -0.6579 5.6384 5.5321 38 1 1.3952 6.2516 4.3222 39 1 1.7164 6.8998 0.9379 40 1 1.9679 7.1873 2.6904 41 1 4.0742 7.9211 1.7780 42 1 4.0772 6.6313 0.5307 43 1 4.7778 6.4565 3.4633 44 1 5.3800 5.4709 2.0964 45 1 3.1984 4.8650 3.9269 46 1 3.8241 3.8639 2.5862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:20 Heat of formation + Delta-G solvation = 12.190171 kcal Electronic energy + Delta-G solvation = -23842.041458 eV Core-core repulsion = 20730.277338 eV Total energy + Delta-G solvation = -3111.764120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29153 -38.75057 -37.83260 -34.75140 -33.51622 -33.06005 -31.44015 -29.83485 -29.49089 -28.42384 -25.72158 -24.24808 -24.13653 -22.21164 -21.78063 -21.31666 -21.18342 -18.77380 -18.01643 -17.12479 -16.84991 -16.42969 -16.12657 -15.63188 -15.45599 -15.22478 -14.93239 -14.63704 -14.36774 -14.02540 -13.80186 -13.69781 -13.45068 -13.09728 -13.04855 -12.97714 -12.82521 -12.65938 -12.54874 -12.29328 -12.19264 -12.09610 -12.07531 -11.95053 -11.51755 -11.46846 -11.25791 -10.85034 -10.46677 -9.70661 -9.53773 -9.35030 -8.87570 -8.07151 -6.22472 0.41106 0.50474 1.40185 1.41779 1.49154 2.42430 2.81388 2.99510 3.18136 3.71547 3.86063 3.90298 3.99157 4.05028 4.15729 4.22037 4.32195 4.49489 4.50164 4.57469 4.63368 4.72551 4.73876 4.75750 4.85131 4.89093 4.90171 4.94628 4.99002 5.01699 5.12415 5.16786 5.21443 5.28900 5.37807 5.52559 5.57001 5.60719 5.69370 5.72754 5.74670 5.88457 6.02096 6.03109 6.30474 6.49179 6.58009 6.85268 7.10657 7.46767 8.95449 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.006144 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.811441 B = 4556.057033 C = 6219.449490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.226 3.774 4 H -0.025 1.025 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.120 3.880 15 C -0.072 4.072 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.154 4.154 20 C 0.074 3.926 21 N -0.502 5.502 22 C 0.040 3.960 23 C -0.118 4.118 24 C -0.125 4.125 25 C 0.043 3.957 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.133 0.867 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 13.170 12.949 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 C 0.118 3.882 4 H -0.007 1.007 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.010 4.010 15 C -0.074 4.074 16 C -0.129 4.129 17 C -0.140 4.140 18 C -0.132 4.132 19 C -0.174 4.174 20 C -0.021 4.021 21 N -0.223 5.223 22 C -0.086 4.086 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.083 4.083 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.585 12.283 12.421 18.340 hybrid contribution 1.552 0.663 -0.423 1.740 sum -4.032 12.946 11.998 18.106 Atomic orbital electron populations 1.21614 0.96711 0.99872 1.00200 1.21365 0.94133 0.98628 0.99641 1.18889 0.92625 0.91243 0.85492 1.00693 1.21774 0.92870 1.37284 1.05822 0.93069 1.25659 1.02433 0.94848 0.95292 1.70019 1.36572 1.38721 1.10083 0.85676 0.80681 0.78267 0.77390 1.19672 1.20887 1.19848 1.60872 1.15097 1.29753 1.24453 1.20589 0.95503 0.91885 0.92997 1.19900 0.94955 0.95726 0.96792 1.21188 0.96198 0.99696 0.95845 1.21433 1.00653 0.96339 0.95622 1.21317 0.93932 0.97659 1.00303 1.21706 0.99060 1.01317 0.95313 1.18987 0.92822 0.96897 0.93362 1.62245 1.00378 1.16716 1.43000 1.23353 0.97842 0.86355 1.01076 1.22465 0.93421 1.00270 0.99437 1.22391 0.97601 0.96050 1.00285 1.22908 0.90043 0.99665 0.95705 0.95084 0.93466 0.92582 0.92288 0.95586 0.92984 0.85217 0.92179 0.96864 0.85425 0.83390 0.83322 0.84940 0.91056 0.91660 0.88311 0.92342 0.89085 0.91573 0.92650 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.08 71.98 0.65 -4.69 16 2 C -0.10 -5.04 5.44 30.60 0.17 -4.87 16 3 C 0.23 11.99 2.20 44.17 0.10 12.09 16 4 H -0.02 -1.47 7.54 -2.39 -0.02 -1.49 16 5 C -0.54 -30.59 8.61 25.60 0.22 -30.37 16 6 H 0.05 2.87 7.35 -2.91 -0.02 2.85 16 7 C 0.02 0.96 5.30 84.65 0.45 1.41 16 8 N -0.91 -53.98 11.30 21.45 0.24 -53.74 16 9 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 N -0.67 -30.53 5.92 -499.46 -2.96 -33.49 16 14 C 0.12 4.83 4.89 85.56 0.42 5.25 16 15 C -0.07 -2.43 5.39 -19.73 -0.11 -2.53 16 16 C -0.11 -3.09 9.66 22.25 0.22 -2.88 16 17 C -0.12 -2.70 10.04 22.29 0.22 -2.47 16 18 C -0.11 -2.34 10.04 22.25 0.22 -2.11 16 19 C -0.15 -3.69 7.99 22.40 0.18 -3.51 16 20 C 0.07 2.25 4.74 38.21 0.18 2.43 16 21 N -0.50 -15.60 4.17 -682.79 -2.85 -18.45 16 22 C 0.04 0.99 6.39 86.65 0.55 1.54 16 23 C -0.12 -2.63 7.06 31.80 0.22 -2.40 16 24 C -0.13 -2.88 6.93 31.48 0.22 -2.67 16 25 C 0.04 1.24 6.34 86.45 0.55 1.79 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.06 2.22 7.17 -2.39 -0.02 2.20 16 29 H 0.06 3.35 5.98 -2.39 -0.01 3.33 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.33 15.38 6.30 -89.69 -0.56 14.81 16 33 H 0.06 2.39 6.90 -2.39 -0.02 2.37 16 34 H 0.01 0.60 7.78 -2.39 -0.02 0.58 16 35 H 0.13 3.36 8.03 -2.91 -0.02 3.34 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.13 2.64 7.00 -2.91 -0.02 2.62 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.36 6.36 -2.39 -0.02 1.34 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.06 1.44 7.01 -2.39 -0.02 1.43 16 46 H 0.06 1.93 7.22 -2.39 -0.02 1.92 16 Total: -1.00 -63.96 356.54 1.31 -62.65 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.38 Total: 30.43 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.46 Total: -34.02 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.56 Total: -105.67 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.96 1.31 -62.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.840 kcal (2) G-P(sol) polarization free energy of solvation -63.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds