Wall clock time and date at job start Fri Apr 10 2020 19:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46881 * 2 1 4 4 H 1.09003 * 109.46931 * 54.37849 * 3 2 1 5 5 C 1.50703 * 109.46859 * 174.38076 * 3 2 1 6 6 H 1.07991 * 120.00397 * 119.72929 * 5 3 2 7 7 C 1.37882 * 119.99441 * 299.99493 * 5 3 2 8 8 N 1.31518 * 119.99625 * 179.72360 * 7 5 3 9 9 Si 1.86803 * 120.00071 * 359.73142 * 7 5 3 10 10 H 1.48500 * 109.47076 * 89.99840 * 9 7 5 11 11 H 1.48497 * 109.46762 * 209.99367 * 9 7 5 12 12 H 1.48498 * 109.47171 * 329.99658 * 9 7 5 13 13 N 1.46904 * 109.47125 * 294.37400 * 3 2 1 14 14 C 1.46904 * 110.99583 * 153.99518 * 13 3 2 15 15 C 1.50699 * 109.46902 * 184.33330 * 14 13 3 16 16 C 1.38287 * 119.92286 * 269.72621 * 15 14 13 17 17 C 1.38105 * 120.07432 * 179.72439 * 16 15 14 18 18 C 1.38916 * 119.92201 * 0.55120 * 17 16 15 19 19 N 1.39677 * 120.07360 * 179.70191 * 18 17 16 20 20 C 1.48534 * 110.99637 * 116.59344 * 19 18 17 21 21 C 1.54945 * 103.22232 * 159.72191 * 20 19 18 22 22 C 1.54594 * 102.92055 * 322.58435 * 21 20 19 23 23 C 1.47895 * 110.99894 * 233.99385 * 19 18 17 24 24 C 1.38910 * 119.85115 * 359.72213 * 18 17 16 25 25 C 1.38105 * 119.92416 * 0.02562 * 24 18 17 26 26 H 1.09003 * 109.47494 * 186.03447 * 1 2 3 27 27 H 1.08999 * 109.47060 * 306.03657 * 1 2 3 28 28 H 1.09007 * 109.47134 * 66.03899 * 1 2 3 29 29 H 1.09007 * 109.46915 * 240.00276 * 2 1 3 30 30 H 1.09000 * 109.47042 * 120.00348 * 2 1 3 31 31 H 0.97000 * 119.99306 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00095 * 30.04870 * 13 3 2 33 33 H 1.08998 * 109.47244 * 304.33596 * 14 13 3 34 34 H 1.09001 * 109.46803 * 64.33109 * 14 13 3 35 35 H 1.07998 * 119.96200 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.03922 * 180.27088 * 17 16 15 37 37 H 1.08997 * 110.67136 * 278.15058 * 20 19 18 38 38 H 1.09000 * 110.66811 * 41.28914 * 20 19 18 39 39 H 1.09003 * 110.71986 * 204.23394 * 21 20 19 40 40 H 1.08999 * 110.72519 * 80.94211 * 21 20 19 41 41 H 1.08994 * 110.31111 * 263.03938 * 22 21 20 42 42 H 1.09006 * 110.30396 * 140.87193 * 22 21 20 43 43 H 1.09003 * 109.91705 * 333.50424 * 23 19 18 44 44 H 1.08998 * 109.92098 * 94.60643 * 23 19 18 45 45 H 1.07996 * 120.03820 * 180.02562 * 24 18 17 46 46 H 1.08000 * 119.96025 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5967 1.9845 0.8354 5 6 3.5405 1.4448 0.1391 6 1 4.1539 1.8826 -0.6344 7 6 4.1305 0.8829 1.2515 8 7 5.4403 0.8800 1.3704 9 14 3.0695 0.1256 2.5895 10 1 2.8451 -1.3113 2.2894 11 1 3.7567 0.2563 3.8994 12 1 1.7632 0.8299 2.6433 13 7 1.6642 2.0947 -1.2616 14 6 1.5604 3.5501 -1.0912 15 6 1.0715 4.1724 -2.3737 16 6 1.9806 4.5867 -3.3298 17 6 1.5358 5.1521 -4.5087 18 6 0.1738 5.3150 -4.7285 19 7 -0.2793 5.8922 -5.9169 20 6 -1.0878 4.9258 -6.7035 21 6 -1.9093 5.8380 -7.6490 22 6 -2.2389 7.0552 -6.7548 23 6 -1.1740 7.0374 -5.6425 24 6 -0.7364 4.9028 -3.7635 25 6 -0.2849 4.3334 -2.5891 26 1 -0.3634 -1.0220 0.1080 27 1 -0.3633 0.6046 0.8310 28 1 -0.3634 0.4174 -0.9392 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 5.8553 0.4844 2.1528 32 1 0.8047 1.7110 -1.6250 33 1 0.8577 3.7727 -0.2883 34 1 2.5398 3.9573 -0.8400 35 1 3.0395 4.4642 -3.1561 36 1 2.2461 5.4715 -5.2568 37 1 -0.4420 4.2603 -7.2763 38 1 -1.7478 4.3550 -6.0503 39 1 -2.8224 5.3372 -7.9707 40 1 -1.3111 6.1413 -8.5082 41 1 -3.2356 6.9508 -6.3261 42 1 -2.1687 7.9779 -7.3309 43 1 -1.6531 6.9100 -4.6718 44 1 -0.6034 7.9660 -5.6558 45 1 -1.7959 5.0276 -3.9314 46 1 -0.9921 4.0124 -1.8386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:24 Heat of formation + Delta-G solvation = 34.904345 kcal Electronic energy + Delta-G solvation = -22581.432414 eV Core-core repulsion = 19470.653255 eV Total energy + Delta-G solvation = -3110.779159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26572 -38.14138 -36.47074 -33.46924 -32.08715 -31.40789 -30.81171 -29.13031 -28.73358 -26.94803 -24.32320 -22.89892 -22.43677 -21.71050 -21.16096 -20.19753 -19.84571 -17.34606 -16.77654 -16.29464 -15.59127 -15.13311 -15.02277 -14.33901 -14.29864 -14.10281 -13.89398 -13.35827 -13.32416 -13.02531 -12.77559 -12.70105 -12.53633 -12.17716 -11.95563 -11.73926 -11.65796 -11.53817 -11.39694 -11.33548 -10.94685 -10.86235 -10.82619 -10.40966 -10.27537 -9.96510 -9.43501 -9.21970 -8.77334 -8.74345 -8.52917 -8.31815 -7.37215 -6.03411 -4.00227 1.39047 1.56282 3.25562 3.35827 3.38059 3.75331 3.82985 4.38842 4.40903 4.52802 4.67472 4.95196 5.02899 5.07992 5.10236 5.21796 5.25055 5.38388 5.39038 5.48241 5.52976 5.61479 5.64350 5.70800 5.72502 5.75826 5.80706 5.84977 5.91900 5.95103 5.99780 6.21779 6.37182 6.45511 6.49844 6.53088 6.57800 6.60304 6.69135 6.79827 6.93822 6.96859 7.17204 7.41290 7.72011 7.95069 8.25317 8.76191 9.09068 9.59632 11.10025 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.032687 B = 0.003081 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.413616 B = 9086.720144 C = 9499.412978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C 0.189 3.811 4 H 0.001 0.999 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.066 3.934 8 N -0.901 5.901 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.668 5.668 14 C 0.102 3.898 15 C -0.069 4.069 16 C -0.089 4.089 17 C -0.095 4.095 18 C 0.067 3.933 19 N -0.482 5.482 20 C 0.038 3.962 21 C -0.124 4.124 22 C -0.132 4.132 23 C 0.036 3.964 24 C -0.152 4.152 25 C -0.109 4.109 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.319 0.681 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 9.928 -13.802 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.081 3.919 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.299 5.299 14 C -0.027 4.027 15 C -0.070 4.070 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.027 4.027 19 N -0.203 5.203 20 C -0.088 4.088 21 C -0.162 4.162 22 C -0.170 4.170 23 C -0.091 4.091 24 C -0.172 4.172 25 C -0.129 4.129 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.044 0.956 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.131 0.869 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.043 10.071 -14.198 23.007 hybrid contribution -2.034 -0.759 1.857 2.857 sum -17.077 9.312 -12.341 23.036 Atomic orbital electron populations 1.21917 0.98235 1.00581 1.00696 1.22127 0.92919 1.00439 1.01880 1.19669 0.96997 0.89282 0.85996 0.98122 1.21041 0.89078 1.37538 1.05741 0.90056 1.24966 0.94760 0.95988 0.97783 1.69889 1.08875 1.45874 1.29339 0.86950 0.80744 0.79764 0.81311 1.20590 1.22495 1.19339 1.60598 1.36756 1.01346 1.31157 1.20891 1.00860 0.89853 0.91112 1.20127 0.92847 0.97129 0.96881 1.21118 1.00307 0.96748 0.92658 1.20974 0.94042 0.99099 0.97273 1.18887 0.93688 0.99633 0.90541 1.62396 1.35023 1.06819 1.16052 1.23338 0.95175 0.94679 0.95594 1.22498 0.99692 0.95757 0.98240 1.22413 0.98397 0.99208 0.96949 1.22995 0.93327 0.94935 0.97811 1.21426 0.99002 1.01498 0.95298 1.20909 0.95320 0.99614 0.97029 0.93590 0.93608 0.93177 0.91283 0.92746 0.92738 0.86344 0.95610 0.89517 0.85140 0.85648 0.89742 0.93217 0.90973 0.90602 0.91510 0.90904 0.93070 0.90194 0.86904 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.64 37.16 0.36 -2.32 16 2 C -0.14 -2.90 5.01 -26.73 -0.13 -3.03 16 3 C 0.19 4.40 1.62 -68.86 -0.11 4.29 16 4 H 0.00 0.03 6.76 -51.93 -0.35 -0.32 16 5 C -0.50 -13.90 9.28 -34.44 -0.32 -14.22 16 6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.88 21.87 24.42 -169.99 -4.15 17.72 16 10 H -0.28 -6.74 6.82 56.52 0.39 -6.35 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.67 -13.52 6.32 -109.21 -0.69 -14.21 16 14 C 0.10 1.85 5.65 -4.97 -0.03 1.82 16 15 C -0.07 -1.08 5.35 -104.59 -0.56 -1.64 16 16 C -0.09 -1.35 9.69 -39.61 -0.38 -1.73 16 17 C -0.10 -1.30 9.97 -39.38 -0.39 -1.70 16 18 C 0.07 0.86 4.86 -83.78 -0.41 0.45 16 19 N -0.48 -5.44 5.28 -167.16 -0.88 -6.32 16 20 C 0.04 0.37 6.43 -1.89 -0.01 0.36 16 21 C -0.12 -0.92 7.06 -24.87 -0.18 -1.09 16 22 C -0.13 -0.96 6.93 -25.37 -0.18 -1.13 16 23 C 0.04 0.34 6.48 -2.76 -0.02 0.32 16 24 C -0.15 -1.92 7.91 -39.38 -0.31 -2.23 16 25 C -0.11 -1.51 9.69 -39.61 -0.38 -1.89 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.76 6.67 -51.92 -0.35 0.42 16 29 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 30 H 0.05 1.25 3.23 -51.93 -0.17 1.08 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.32 5.82 6.53 -39.29 -0.26 5.56 16 33 H 0.03 0.45 7.89 -51.93 -0.41 0.05 16 34 H 0.09 1.73 8.05 -51.93 -0.42 1.31 16 35 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.49 7.04 -51.93 -0.37 0.12 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.50 6.28 -51.93 -0.33 0.17 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.11 1.24 7.04 -52.49 -0.37 0.87 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -30.27 354.76 -10.45 -40.72 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.69 Total: 5.56 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.15 Total: -21.95 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.80 Total: -47.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.15 Total: 17.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.27 -10.45 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.625 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds