Wall clock time and date at job start Fri Apr 10 2020 19:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46881 * 2 1 4 4 H 1.09003 * 109.46931 * 54.37849 * 3 2 1 5 5 C 1.50703 * 109.46859 * 174.38076 * 3 2 1 6 6 H 1.07991 * 120.00397 * 119.72929 * 5 3 2 7 7 C 1.37882 * 119.99441 * 299.99493 * 5 3 2 8 8 N 1.31518 * 119.99625 * 179.72360 * 7 5 3 9 9 Si 1.86803 * 120.00071 * 359.73142 * 7 5 3 10 10 H 1.48500 * 109.47076 * 89.99840 * 9 7 5 11 11 H 1.48497 * 109.46762 * 209.99367 * 9 7 5 12 12 H 1.48498 * 109.47171 * 329.99658 * 9 7 5 13 13 N 1.46904 * 109.47125 * 294.37400 * 3 2 1 14 14 C 1.46904 * 110.99583 * 153.99518 * 13 3 2 15 15 C 1.50699 * 109.46902 * 184.33330 * 14 13 3 16 16 C 1.38287 * 119.92286 * 269.72621 * 15 14 13 17 17 C 1.38105 * 120.07432 * 179.72439 * 16 15 14 18 18 C 1.38916 * 119.92201 * 0.55120 * 17 16 15 19 19 N 1.39677 * 120.07360 * 179.70191 * 18 17 16 20 20 C 1.48534 * 110.99637 * 116.59344 * 19 18 17 21 21 C 1.54945 * 103.22232 * 159.72191 * 20 19 18 22 22 C 1.54594 * 102.92055 * 322.58435 * 21 20 19 23 23 C 1.47895 * 110.99894 * 233.99385 * 19 18 17 24 24 C 1.38910 * 119.85115 * 359.72213 * 18 17 16 25 25 C 1.38105 * 119.92416 * 0.02562 * 24 18 17 26 26 H 1.09003 * 109.47494 * 186.03447 * 1 2 3 27 27 H 1.08999 * 109.47060 * 306.03657 * 1 2 3 28 28 H 1.09007 * 109.47134 * 66.03899 * 1 2 3 29 29 H 1.09007 * 109.46915 * 240.00276 * 2 1 3 30 30 H 1.09000 * 109.47042 * 120.00348 * 2 1 3 31 31 H 0.97000 * 119.99306 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00095 * 30.04870 * 13 3 2 33 33 H 1.08998 * 109.47244 * 304.33596 * 14 13 3 34 34 H 1.09001 * 109.46803 * 64.33109 * 14 13 3 35 35 H 1.07998 * 119.96200 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.03922 * 180.27088 * 17 16 15 37 37 H 1.08997 * 110.67136 * 278.15058 * 20 19 18 38 38 H 1.09000 * 110.66811 * 41.28914 * 20 19 18 39 39 H 1.09003 * 110.71986 * 204.23394 * 21 20 19 40 40 H 1.08999 * 110.72519 * 80.94211 * 21 20 19 41 41 H 1.08994 * 110.31111 * 263.03938 * 22 21 20 42 42 H 1.09006 * 110.30396 * 140.87193 * 22 21 20 43 43 H 1.09003 * 109.91705 * 333.50424 * 23 19 18 44 44 H 1.08998 * 109.92098 * 94.60643 * 23 19 18 45 45 H 1.07996 * 120.03820 * 180.02562 * 24 18 17 46 46 H 1.08000 * 119.96025 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5967 1.9845 0.8354 5 6 3.5405 1.4448 0.1391 6 1 4.1539 1.8826 -0.6344 7 6 4.1305 0.8829 1.2515 8 7 5.4403 0.8800 1.3704 9 14 3.0695 0.1256 2.5895 10 1 2.8451 -1.3113 2.2894 11 1 3.7567 0.2563 3.8994 12 1 1.7632 0.8299 2.6433 13 7 1.6642 2.0947 -1.2616 14 6 1.5604 3.5501 -1.0912 15 6 1.0715 4.1724 -2.3737 16 6 1.9806 4.5867 -3.3298 17 6 1.5358 5.1521 -4.5087 18 6 0.1738 5.3150 -4.7285 19 7 -0.2793 5.8922 -5.9169 20 6 -1.0878 4.9258 -6.7035 21 6 -1.9093 5.8380 -7.6490 22 6 -2.2389 7.0552 -6.7548 23 6 -1.1740 7.0374 -5.6425 24 6 -0.7364 4.9028 -3.7635 25 6 -0.2849 4.3334 -2.5891 26 1 -0.3634 -1.0220 0.1080 27 1 -0.3633 0.6046 0.8310 28 1 -0.3634 0.4174 -0.9392 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 5.8553 0.4844 2.1528 32 1 0.8047 1.7110 -1.6250 33 1 0.8577 3.7727 -0.2883 34 1 2.5398 3.9573 -0.8400 35 1 3.0395 4.4642 -3.1561 36 1 2.2461 5.4715 -5.2568 37 1 -0.4420 4.2603 -7.2763 38 1 -1.7478 4.3550 -6.0503 39 1 -2.8224 5.3372 -7.9707 40 1 -1.3111 6.1413 -8.5082 41 1 -3.2356 6.9508 -6.3261 42 1 -2.1687 7.9779 -7.3309 43 1 -1.6531 6.9100 -4.6718 44 1 -0.6034 7.9660 -5.6558 45 1 -1.7959 5.0276 -3.9314 46 1 -0.9921 4.0124 -1.8386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:23 Heat of formation + Delta-G solvation = 15.560880 kcal Electronic energy + Delta-G solvation = -22582.271210 eV Core-core repulsion = 19470.653255 eV Total energy + Delta-G solvation = -3111.617955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21173 -39.24056 -38.02234 -34.84187 -33.99594 -32.63705 -31.90141 -30.02561 -29.80987 -28.68071 -25.69853 -24.21292 -23.83123 -22.75280 -21.79704 -21.71247 -21.19350 -18.86642 -18.26684 -17.22169 -17.00217 -16.74156 -16.13926 -15.83236 -15.54387 -15.18540 -14.99150 -14.90412 -14.37836 -14.30336 -14.10707 -13.96792 -13.79500 -13.44660 -13.33948 -12.93289 -12.83557 -12.78431 -12.50746 -12.26718 -12.24872 -12.12286 -12.05141 -11.91165 -11.65481 -11.43969 -11.27928 -11.20934 -10.68511 -9.86510 -9.62921 -9.42013 -9.03372 -8.27055 -6.28910 0.27988 0.47113 1.28580 1.33755 1.44061 2.31589 2.70453 2.92912 3.05837 3.61525 3.71709 3.89922 3.92011 3.99327 4.04662 4.09277 4.27438 4.31681 4.34111 4.38386 4.43031 4.50186 4.59340 4.62790 4.73314 4.81446 4.84228 4.90503 4.91759 4.97230 5.05138 5.06055 5.08874 5.14198 5.17954 5.20288 5.29265 5.35553 5.42622 5.50434 5.70725 5.76551 5.81668 5.87558 6.06116 6.44131 6.48338 6.77701 6.93550 7.35556 8.90443 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.032687 B = 0.003081 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.413616 B = 9086.720144 C = 9499.412978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.195 3.805 4 H -0.003 1.003 5 C -0.501 4.501 6 H 0.031 0.969 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.300 1.300 12 H -0.247 1.247 13 N -0.676 5.676 14 C 0.109 3.891 15 C -0.086 4.086 16 C -0.103 4.103 17 C -0.103 4.103 18 C 0.074 3.926 19 N -0.495 5.495 20 C 0.034 3.966 21 C -0.118 4.118 22 C -0.126 4.126 23 C 0.032 3.968 24 C -0.146 4.146 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.335 0.665 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.137 0.863 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 9.892 -14.456 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.086 3.914 4 H 0.015 0.985 5 C -0.539 4.539 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.228 1.228 12 H -0.171 1.171 13 N -0.308 5.308 14 C -0.020 4.020 15 C -0.086 4.086 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.021 4.021 19 N -0.217 5.217 20 C -0.092 4.092 21 C -0.156 4.156 22 C -0.164 4.164 23 C -0.094 4.094 24 C -0.166 4.166 25 C -0.124 4.124 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.155 0.845 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.213 10.045 -14.885 26.299 hybrid contribution -0.682 -0.639 1.897 2.115 sum -19.896 9.406 -12.988 25.554 Atomic orbital electron populations 1.21843 0.94267 1.02491 1.02002 1.22014 0.96440 0.98064 1.00885 1.19448 0.93621 0.91194 0.87156 0.98508 1.21319 0.91749 1.36466 1.04391 0.95048 1.25845 0.95972 0.96681 1.00523 1.70060 1.11130 1.47675 1.30476 0.85845 0.79508 0.79590 0.77433 1.19071 1.22802 1.17061 1.60389 1.38033 1.02591 1.29834 1.20736 0.99511 0.88622 0.93121 1.19900 0.94002 0.98778 0.95950 1.21071 0.99717 0.97809 0.93586 1.21053 0.95036 0.99215 0.96832 1.19051 0.93336 0.98452 0.91218 1.62411 1.36344 1.07672 1.15298 1.23413 0.95167 0.94809 0.95799 1.22495 1.00028 0.95360 0.97690 1.22412 0.98144 0.99639 0.96216 1.23075 0.93635 0.93992 0.98741 1.21637 1.00126 1.00394 0.94454 1.21045 0.94410 0.99085 0.97831 0.91227 0.93106 0.91295 0.92006 0.94115 0.92683 0.84520 0.94569 0.92772 0.86696 0.85022 0.90318 0.93128 0.89198 0.90549 0.90222 0.89843 0.93166 0.90463 0.84543 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.64 71.98 0.69 -3.80 16 2 C -0.14 -5.57 5.01 30.59 0.15 -5.42 16 3 C 0.19 9.05 1.62 44.17 0.07 9.12 16 4 H 0.00 -0.12 6.76 -2.39 -0.02 -0.14 16 5 C -0.50 -29.27 9.28 25.60 0.24 -29.04 16 6 H 0.03 2.08 8.06 -2.92 -0.02 2.06 16 7 C 0.01 0.36 5.45 84.66 0.46 0.82 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.95 45.31 24.42 68.60 1.68 46.99 16 10 H -0.26 -11.96 6.82 99.48 0.68 -11.28 16 11 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 12 H -0.25 -10.82 6.53 99.48 0.65 -10.17 16 13 N -0.68 -27.45 6.32 -499.44 -3.16 -30.60 16 14 C 0.11 4.03 5.65 85.56 0.48 4.52 16 15 C -0.09 -2.68 5.35 -19.84 -0.11 -2.78 16 16 C -0.10 -3.21 9.69 22.25 0.22 -2.99 16 17 C -0.10 -2.81 9.97 22.40 0.22 -2.59 16 18 C 0.07 1.80 4.86 38.21 0.19 1.98 16 19 N -0.50 -10.26 5.28 -682.77 -3.60 -13.87 16 20 C 0.03 0.58 6.43 86.65 0.56 1.13 16 21 C -0.12 -1.39 7.06 31.80 0.22 -1.17 16 22 C -0.13 -1.43 6.93 31.47 0.22 -1.21 16 23 C 0.03 0.53 6.48 86.45 0.56 1.09 16 24 C -0.15 -3.33 7.91 22.40 0.18 -3.15 16 25 C -0.10 -2.67 9.69 22.25 0.22 -2.46 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.82 6.67 -2.38 -0.02 1.80 16 29 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.04 1.77 3.23 -2.39 -0.01 1.77 16 31 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 32 H 0.34 11.70 6.53 -89.70 -0.59 11.11 16 33 H 0.04 1.26 7.89 -2.39 -0.02 1.24 16 34 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 35 H 0.11 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 0.85 7.04 -2.39 -0.02 0.84 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 43 H 0.05 0.84 6.28 -2.39 -0.01 0.82 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 45 H 0.14 2.48 7.04 -2.91 -0.02 2.46 16 46 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -68.26 354.76 0.07 -68.19 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.28 Total: 25.85 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 4.57 Total: -35.93 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -6.46 Total: -105.10 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.68 Total: 46.99 kcal Total: -68.26 0.07 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.749 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds