Wall clock time and date at job start Fri Apr 10 2020 19:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 5 5 C 1.46911 * 110.99614 * 85.00357 * 4 2 1 6 6 C 1.50700 * 109.46831 * 179.97438 * 5 4 2 7 7 C 1.38283 * 119.92393 * 269.72220 * 6 5 4 8 8 C 1.38111 * 120.07110 * 179.72661 * 7 6 5 9 9 C 1.38909 * 119.92427 * 0.55136 * 8 7 6 10 10 N 1.39676 * 120.07547 * 179.74925 * 9 8 7 11 11 C 1.46491 * 120.00193 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99556 * 359.97438 * 10 9 8 13 13 C 1.50699 * 109.47158 * 90.00428 * 12 10 9 14 14 H 1.08003 * 119.99687 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00027 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99900 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47013 * 60.00484 * 17 15 13 19 19 H 1.48503 * 109.46819 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47269 * 300.00038 * 17 15 13 21 21 C 1.38909 * 119.85286 * 359.72177 * 9 8 7 22 22 C 1.38104 * 119.92354 * 0.02562 * 21 9 8 23 23 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 24 24 C 1.53001 * 117.49866 * 8.61877 * 23 2 1 25 25 C 1.53000 * 117.49497 * 299.99468 * 23 2 1 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.00896 * 111.00679 * 321.05250 * 4 2 1 30 30 H 1.09000 * 109.46786 * 299.99838 * 5 4 2 31 31 H 1.09000 * 109.46923 * 59.99884 * 5 4 2 32 32 H 1.07994 * 119.96150 * 359.97438 * 7 6 5 33 33 H 1.07995 * 120.03804 * 180.27511 * 8 7 6 34 34 H 1.09006 * 109.47365 * 89.99640 * 11 10 9 35 35 H 1.09004 * 109.47653 * 209.99753 * 11 10 9 36 36 H 1.09003 * 109.47441 * 329.99762 * 11 10 9 37 37 H 1.09004 * 109.46972 * 210.00180 * 12 10 9 38 38 H 1.09002 * 109.47388 * 330.00278 * 12 10 9 39 39 H 0.96997 * 119.99775 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.04021 * 179.97438 * 21 9 8 41 41 H 1.08003 * 119.96226 * 179.97438 * 22 21 9 42 42 H 1.09004 * 115.54851 * 154.33029 * 23 2 1 43 43 H 1.09004 * 117.49834 * 0.02562 * 24 23 2 44 44 H 1.08995 * 117.49577 * 145.02406 * 24 23 2 45 45 H 1.08998 * 117.49694 * 214.97781 * 25 23 2 46 46 H 1.08999 * 117.50120 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5885 -0.5216 -3.5557 7 6 3.9452 -0.5676 -3.8195 8 6 4.4127 -1.2535 -4.9233 9 6 3.5176 -1.8879 -5.7752 10 7 3.9866 -2.5780 -6.8954 11 6 3.0412 -3.2470 -7.7925 12 6 5.4240 -2.6329 -7.1730 13 6 6.0213 -3.8382 -6.4936 14 1 5.3930 -4.4972 -5.9127 15 6 7.3697 -4.0996 -6.6136 16 7 8.1348 -3.2968 -7.3205 17 14 8.1101 -5.5933 -5.7708 18 1 7.4588 -6.8250 -6.2846 19 1 9.5671 -5.6489 -6.0524 20 1 7.8931 -5.4930 -4.3052 21 6 2.1550 -1.8349 -5.5105 22 6 1.6947 -1.1517 -4.4021 23 6 2.0400 -0.7213 1.2493 24 6 1.0104 -1.4541 2.1117 25 6 1.6358 -0.1495 2.6096 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.4496 -1.4980 -1.4101 30 1 1.0871 0.6162 -2.5525 31 1 2.7589 1.0461 -2.1182 32 1 4.6401 -0.0700 -3.1594 33 1 5.4727 -1.2928 -5.1263 34 1 2.7312 -2.5547 -8.5753 35 1 3.5212 -4.1151 -8.2444 36 1 2.1678 -3.5689 -7.2254 37 1 5.5838 -2.7059 -8.2488 38 1 5.9019 -1.7289 -6.7953 39 1 9.0834 -3.4810 -7.4052 40 1 1.4563 -2.3268 -6.1711 41 1 0.6353 -1.1098 -4.1958 42 1 3.0324 -1.1641 1.1642 43 1 -0.0303 -1.4227 1.7889 44 1 1.3253 -2.3794 2.5942 45 1 2.3620 -0.2165 3.4196 46 1 1.0062 0.7403 2.6146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072727469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:48 Heat of formation + Delta-G solvation = 53.924398 kcal Electronic energy + Delta-G solvation = -22223.074775 eV Core-core repulsion = 19113.120387 eV Total energy + Delta-G solvation = -3109.954388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.18837 -38.57529 -36.21200 -34.68488 -32.69400 -30.77302 -30.41564 -28.46732 -27.77511 -25.85698 -24.52389 -23.54997 -22.53934 -21.93321 -21.51252 -19.75707 -19.37560 -16.80065 -16.49352 -16.26956 -15.49017 -15.21273 -14.86511 -14.69171 -14.26825 -14.04324 -13.71263 -13.42245 -13.09104 -12.95183 -12.84917 -12.54564 -12.13443 -12.00965 -11.86205 -11.72639 -11.44943 -11.38553 -11.23036 -11.21175 -10.94793 -10.75249 -10.65644 -10.35473 -10.24420 -10.06385 -9.88769 -9.73927 -8.83776 -8.48873 -8.32506 -8.23494 -6.45113 -6.00277 -4.15996 2.13650 2.23755 3.29820 3.33988 3.37767 3.63464 4.13031 4.19122 4.42890 4.60471 4.66707 4.75717 4.93089 5.04913 5.08284 5.19986 5.23005 5.33082 5.35700 5.47285 5.53727 5.60266 5.66208 5.66883 5.79701 5.82347 5.86806 5.94149 5.98751 6.04294 6.09855 6.17528 6.29030 6.41904 6.46242 6.66090 6.94609 7.02525 7.13606 7.20509 7.28897 7.39408 7.48893 7.62947 7.82429 8.16901 8.28277 8.50366 8.92788 9.50841 10.97105 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003321 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.228602 B = 8428.307716 C = 9498.169150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.112 3.888 3 H 0.079 0.921 4 N -0.677 5.677 5 C 0.116 3.884 6 C -0.173 4.173 7 C -0.051 4.051 8 C -0.188 4.188 9 C 0.242 3.758 10 N -0.616 5.616 11 C 0.098 3.902 12 C 0.249 3.751 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.222 4.222 22 C -0.068 4.068 23 C -0.135 4.135 24 C -0.189 4.189 25 C -0.183 4.183 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.343 0.657 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.950 6.831 12.274 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.002 3.998 3 H 0.097 0.903 4 N -0.308 5.308 5 C -0.012 4.012 6 C -0.176 4.176 7 C -0.070 4.070 8 C -0.211 4.211 9 C 0.135 3.865 10 N -0.322 5.322 11 C -0.046 4.046 12 C 0.129 3.871 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.246 4.246 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.226 4.226 25 C -0.220 4.220 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.161 0.839 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.149 0.851 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.989 6.824 12.147 19.743 hybrid contribution -0.427 -0.911 0.211 1.028 sum -14.416 5.913 12.357 19.887 Atomic orbital electron populations 1.22629 0.97702 1.02182 1.01896 1.21028 0.91857 0.97381 0.89540 0.90283 1.60573 1.57349 1.09655 1.03187 1.20681 0.98378 0.94075 0.88069 1.19177 0.93725 1.06557 0.98094 1.20644 0.94270 0.96657 0.95439 1.20902 1.00187 1.03151 0.96831 1.17955 0.92060 0.89552 0.86977 1.47101 1.08036 1.53336 1.23688 1.21467 0.93113 0.96871 0.93111 1.19281 0.73782 0.97416 0.96579 1.21548 0.93410 1.10246 1.31877 0.92303 1.24959 0.96957 0.96851 0.95264 1.69921 1.05971 1.37449 1.40117 0.86580 0.77897 0.82924 0.80210 1.20252 1.21186 1.20034 1.20513 0.93800 1.08546 1.01691 1.20496 0.97761 0.96433 0.94076 1.22369 0.99949 1.02842 0.90232 1.23128 0.99008 0.95896 1.04534 1.22939 1.03965 0.97433 0.97694 0.92676 0.92229 0.91990 0.83877 0.95471 0.91088 0.87028 0.85087 0.94656 0.91468 0.92722 0.95232 0.94609 0.92593 0.86992 0.87817 0.86982 0.88486 0.89192 0.89001 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 7.76 37.16 0.29 -1.25 16 2 C 0.11 1.10 2.99 -67.71 -0.20 0.90 16 3 H 0.08 0.79 7.80 -51.93 -0.40 0.38 16 4 N -0.68 -8.10 6.24 -107.98 -0.67 -8.78 16 5 C 0.12 1.45 5.61 -4.97 -0.03 1.42 16 6 C -0.17 -2.68 5.39 -104.59 -0.56 -3.24 16 7 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 8 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 9 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 10 N -0.62 -13.32 2.99 -181.00 -0.54 -13.86 16 11 C 0.10 1.75 10.19 59.84 0.61 2.35 16 12 C 0.25 6.30 4.91 -5.19 -0.03 6.27 16 13 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 14 H 0.06 1.66 7.81 -52.48 -0.41 1.24 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 17 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 22 C -0.07 -1.06 9.69 -39.61 -0.38 -1.44 16 23 C -0.14 -1.32 6.01 -90.62 -0.54 -1.86 16 24 C -0.19 -1.61 9.57 -26.73 -0.26 -1.87 16 25 C -0.18 -1.50 9.90 -26.73 -0.26 -1.76 16 26 H 0.05 0.46 7.45 -51.93 -0.39 0.08 16 27 H 0.06 0.44 7.07 -51.93 -0.37 0.08 16 28 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 29 H 0.34 4.12 8.46 -39.29 -0.33 3.79 16 30 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 31 H 0.07 0.87 7.99 -51.93 -0.42 0.46 16 32 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16 37 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.04 0.96 6.20 -51.93 -0.32 0.63 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.11 1.77 6.14 -52.48 -0.32 1.44 16 41 H 0.10 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.10 0.77 5.85 -51.93 -0.30 0.47 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.67 7.61 -51.93 -0.39 0.28 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -28.58 367.10 -10.98 -39.55 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.56 Total: 5.36 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.45 Total: -19.19 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.48 Total: -47.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.58 -10.98 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072727469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.477 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds