Wall clock time and date at job start Fri Apr 10 2020 19:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00375 * 2 1 4 4 C 1.53001 * 109.46849 * 293.95218 * 3 2 1 5 5 C 1.50697 * 109.47478 * 180.02562 * 4 3 2 6 6 H 1.08006 * 119.99641 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00596 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99550 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00395 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46937 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47121 * 119.99807 * 9 7 5 12 12 H 1.48499 * 109.47235 * 239.99909 * 9 7 5 13 13 C 1.46902 * 110.99853 * 123.94973 * 2 1 3 14 14 H 1.09001 * 109.50746 * 185.97153 * 13 2 1 15 15 C 1.53123 * 109.50249 * 306.04729 * 13 2 1 16 16 C 1.53120 * 109.21163 * 177.60211 * 15 13 2 17 17 C 1.53048 * 109.27450 * 302.43753 * 16 15 13 18 18 N 1.46848 * 109.57298 * 59.08726 * 17 16 15 19 19 C 1.39669 * 110.99772 * 174.18581 * 18 17 16 20 20 C 1.38917 * 120.07030 * 123.93409 * 19 18 17 21 21 C 1.38099 * 119.92319 * 179.77037 * 20 19 18 22 22 C 1.38292 * 120.07813 * 0.50686 * 21 20 19 23 23 C 1.38281 * 120.14359 * 359.74693 * 22 21 20 24 24 C 1.38101 * 120.07998 * 359.97438 * 23 22 21 25 25 C 1.46842 * 111.19688 * 298.28804 * 18 17 16 26 26 H 1.09001 * 109.47765 * 296.05127 * 1 2 3 27 27 H 1.09001 * 109.46936 * 56.05362 * 1 2 3 28 28 H 1.09004 * 109.47541 * 176.04745 * 1 2 3 29 29 H 1.08997 * 109.47276 * 53.94349 * 3 2 1 30 30 H 1.09001 * 109.47368 * 173.95179 * 3 2 1 31 31 H 1.09004 * 109.46846 * 299.99600 * 4 3 2 32 32 H 1.09001 * 109.47659 * 59.99645 * 4 3 2 33 33 H 0.96996 * 120.00171 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.52319 * 297.54005 * 15 13 2 35 35 H 1.08995 * 109.52318 * 57.66686 * 15 13 2 36 36 H 1.09000 * 109.50719 * 62.32149 * 16 15 13 37 37 H 1.09003 * 109.50116 * 182.43702 * 16 15 13 38 38 H 1.08999 * 109.41208 * 299.06816 * 17 16 15 39 39 H 1.08998 * 109.44995 * 179.12696 * 17 16 15 40 40 H 1.08003 * 120.03694 * 0.02562 * 20 19 18 41 41 H 1.08008 * 119.96499 * 180.25431 * 21 20 19 42 42 H 1.07997 * 119.92469 * 179.72434 * 22 21 20 43 43 H 1.08005 * 119.96304 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.04212 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.46203 * 301.72398 * 25 18 17 46 46 H 1.09004 * 109.46228 * 181.75951 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1721 3.4640 -1.3187 6 1 2.7202 3.8321 -0.4639 7 6 1.9672 4.2811 -2.4102 8 7 1.3003 3.8327 -3.4513 9 14 2.6367 6.0249 -2.4104 10 1 3.3447 6.2834 -1.1308 11 1 3.5839 6.1914 -3.5419 12 1 1.5145 6.9861 -2.5587 13 6 1.9953 -0.7659 1.1377 14 1 3.0798 -0.6625 1.1755 15 6 1.3856 -0.2343 2.4378 16 6 1.8922 -1.0754 3.6127 17 6 1.5293 -2.5434 3.3767 18 7 2.1367 -3.0047 2.1218 19 6 1.9347 -4.3749 1.9420 20 6 1.3160 -4.8419 0.7892 21 6 1.1220 -6.1978 0.6124 22 6 1.5333 -7.0895 1.5861 23 6 2.1447 -6.6276 2.7372 24 6 2.3470 -5.2735 2.9178 25 6 1.6282 -2.2426 0.9742 26 1 -0.3635 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8308 30 1 3.0797 1.3443 0.1083 31 1 2.0659 1.5013 -2.1492 32 1 0.5472 2.0844 -1.4267 33 1 1.1565 4.4073 -4.2193 34 1 1.6805 0.8053 2.5801 35 1 0.2990 -0.3006 2.3842 36 1 2.9750 -0.9771 3.6906 37 1 1.4274 -0.7286 4.5356 38 1 0.4457 -2.6432 3.3139 39 1 1.9023 -3.1470 4.2041 40 1 0.9909 -4.1458 0.0302 41 1 0.6448 -6.5619 -0.2855 42 1 1.3764 -8.1490 1.4472 43 1 2.4644 -7.3266 3.4959 44 1 2.8242 -4.9134 3.8172 45 1 0.5441 -2.3438 0.9227 46 1 2.0728 -2.6279 0.0566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081014316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:19 Heat of formation + Delta-G solvation = 34.985820 kcal Electronic energy + Delta-G solvation = -22952.452353 eV Core-core repulsion = 19841.676727 eV Total energy + Delta-G solvation = -3110.775626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58678 -38.59806 -36.44717 -33.49648 -32.80538 -31.40657 -30.36143 -29.15818 -28.48522 -26.18003 -24.80948 -24.22065 -22.79135 -21.67927 -21.18179 -20.01621 -19.07901 -17.78628 -16.49664 -15.91206 -15.62411 -15.16233 -14.87072 -14.66603 -14.52887 -14.45098 -13.88755 -13.72795 -13.60103 -13.41382 -13.15047 -12.75444 -12.46812 -12.14105 -12.03953 -11.59141 -11.47278 -11.23069 -11.18657 -11.04309 -10.88557 -10.83098 -10.57507 -10.54225 -10.45834 -9.80945 -9.73551 -9.36089 -9.10054 -9.06565 -8.32828 -7.92563 -7.67668 -5.99364 -4.01527 1.26476 1.27772 3.31229 3.38650 3.42242 3.45438 3.74862 4.40550 4.53456 4.70536 4.75866 4.82729 4.86060 4.93077 5.01966 5.15003 5.24053 5.29503 5.36676 5.38588 5.43446 5.47171 5.56438 5.67971 5.72613 5.78158 5.83214 5.92113 5.94896 5.98316 6.11854 6.18524 6.29134 6.30697 6.34501 6.43029 6.48676 6.55815 6.66859 6.92048 6.97826 7.21197 7.49424 7.57072 7.79949 7.90575 8.08695 8.44100 9.06010 9.62110 11.12088 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.030918 B = 0.002999 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.412765 B = 9332.963739 C = 9878.410953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.065 3.935 4 C 0.027 3.973 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.088 3.912 14 H 0.087 0.913 15 C -0.158 4.158 16 C -0.114 4.114 17 C 0.061 3.939 18 N -0.489 5.489 19 C 0.119 3.881 20 C -0.171 4.171 21 C -0.093 4.093 22 C -0.153 4.153 23 C -0.098 4.098 24 C -0.145 4.145 25 C 0.062 3.938 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.046 0.954 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -19.216 14.076 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.062 4.062 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.022 4.022 14 H 0.105 0.895 15 C -0.198 4.198 16 C -0.152 4.152 17 C -0.065 4.065 18 N -0.204 5.204 19 C 0.021 3.979 20 C -0.192 4.192 21 C -0.112 4.112 22 C -0.172 4.172 23 C -0.116 4.116 24 C -0.165 4.165 25 C -0.065 4.065 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.064 0.936 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.707 -19.193 13.510 23.482 hybrid contribution -0.645 1.285 0.532 1.533 sum -1.351 -17.908 14.042 22.797 Atomic orbital electron populations 1.22476 0.88475 1.00790 1.01184 1.62219 1.07470 1.16240 1.39771 1.22334 0.98513 0.84958 1.00358 1.19107 0.96866 0.94039 0.90977 1.21228 1.35008 0.97803 1.01902 0.92786 1.24993 0.95318 0.98458 0.95582 1.69980 1.40927 1.36328 1.06005 0.86550 0.78736 0.84793 0.77996 1.19789 1.20978 1.21062 1.21696 1.00250 0.91773 0.88481 0.89481 1.22338 1.01120 1.00348 0.95953 1.21565 1.02163 0.93274 0.98221 1.22225 0.96977 0.96815 0.90438 1.58884 1.56067 1.01037 1.04386 1.19002 0.94944 0.88965 0.94956 1.21440 1.01863 0.96547 0.99364 1.21028 0.98579 0.92918 0.98658 1.21043 1.01881 0.99464 0.94856 1.20977 0.98251 0.94986 0.97431 1.20775 1.03356 0.92729 0.99656 1.22291 0.98141 0.93411 0.92632 0.95854 0.90262 0.92732 0.96035 0.92154 0.95738 0.96480 0.93069 0.91130 0.91667 0.90895 0.91284 0.94080 0.90266 0.85255 0.86135 0.86431 0.86165 0.85952 0.93568 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.58 60.06 0.52 0.83 16 2 N -0.53 -9.49 4.71 -234.79 -1.11 -10.60 16 3 C 0.06 1.36 4.47 -3.82 -0.02 1.34 16 4 C 0.03 0.71 4.90 -27.88 -0.14 0.58 16 5 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 6 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.09 1.29 2.35 -67.63 -0.16 1.13 16 14 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 15 C -0.16 -2.06 4.56 -26.61 -0.12 -2.18 16 16 C -0.11 -1.21 6.10 -26.64 -0.16 -1.37 16 17 C 0.06 0.64 5.26 -3.83 -0.02 0.62 16 18 N -0.49 -5.93 4.70 -171.14 -0.80 -6.73 16 19 C 0.12 1.41 5.64 -83.79 -0.47 0.94 16 20 C -0.17 -1.97 8.82 -39.38 -0.35 -2.32 16 21 C -0.09 -0.94 10.04 -39.61 -0.40 -1.33 16 22 C -0.15 -1.42 10.04 -39.55 -0.40 -1.81 16 23 C -0.10 -0.90 10.04 -39.62 -0.40 -1.30 16 24 C -0.14 -1.50 9.16 -39.38 -0.36 -1.87 16 25 C 0.06 0.82 3.37 -3.84 -0.01 0.80 16 26 H 0.02 0.36 6.16 -51.93 -0.32 0.04 16 27 H 0.08 1.47 6.30 -51.93 -0.33 1.15 16 28 H 0.05 0.78 6.45 -51.93 -0.34 0.44 16 29 H 0.02 0.45 7.12 -51.93 -0.37 0.08 16 30 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.46 6.47 -51.93 -0.34 0.13 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.00 7.03 -51.93 -0.37 0.63 16 35 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.72 6.71 -51.93 -0.35 0.37 16 40 H 0.13 1.47 5.81 -52.48 -0.30 1.17 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.12 1.12 7.15 -52.49 -0.38 0.74 16 45 H 0.05 0.60 6.09 -51.93 -0.32 0.28 16 46 H 0.09 1.26 6.99 -51.93 -0.36 0.89 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -30.16 348.62 -11.25 -41.41 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.41 Total: -0.39 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.90 Total: -19.45 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -1.18 Total: -43.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.16 -11.25 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081014316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.395 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds