Wall clock time and date at job start Fri Apr 10 2020 19:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00375 * 2 1 4 4 C 1.53001 * 109.46849 * 293.95218 * 3 2 1 5 5 C 1.50697 * 109.47478 * 180.02562 * 4 3 2 6 6 H 1.08006 * 119.99641 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00596 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99550 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00395 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46937 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47121 * 119.99807 * 9 7 5 12 12 H 1.48499 * 109.47235 * 239.99909 * 9 7 5 13 13 C 1.46902 * 110.99853 * 123.94973 * 2 1 3 14 14 H 1.09001 * 109.50746 * 185.97153 * 13 2 1 15 15 C 1.53123 * 109.50249 * 306.04729 * 13 2 1 16 16 C 1.53120 * 109.21163 * 177.60211 * 15 13 2 17 17 C 1.53048 * 109.27450 * 302.43753 * 16 15 13 18 18 N 1.46848 * 109.57298 * 59.08726 * 17 16 15 19 19 C 1.39669 * 110.99772 * 174.18581 * 18 17 16 20 20 C 1.38917 * 120.07030 * 123.93409 * 19 18 17 21 21 C 1.38099 * 119.92319 * 179.77037 * 20 19 18 22 22 C 1.38292 * 120.07813 * 0.50686 * 21 20 19 23 23 C 1.38281 * 120.14359 * 359.74693 * 22 21 20 24 24 C 1.38101 * 120.07998 * 359.97438 * 23 22 21 25 25 C 1.46842 * 111.19688 * 298.28804 * 18 17 16 26 26 H 1.09001 * 109.47765 * 296.05127 * 1 2 3 27 27 H 1.09001 * 109.46936 * 56.05362 * 1 2 3 28 28 H 1.09004 * 109.47541 * 176.04745 * 1 2 3 29 29 H 1.08997 * 109.47276 * 53.94349 * 3 2 1 30 30 H 1.09001 * 109.47368 * 173.95179 * 3 2 1 31 31 H 1.09004 * 109.46846 * 299.99600 * 4 3 2 32 32 H 1.09001 * 109.47659 * 59.99645 * 4 3 2 33 33 H 0.96996 * 120.00171 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.52319 * 297.54005 * 15 13 2 35 35 H 1.08995 * 109.52318 * 57.66686 * 15 13 2 36 36 H 1.09000 * 109.50719 * 62.32149 * 16 15 13 37 37 H 1.09003 * 109.50116 * 182.43702 * 16 15 13 38 38 H 1.08999 * 109.41208 * 299.06816 * 17 16 15 39 39 H 1.08998 * 109.44995 * 179.12696 * 17 16 15 40 40 H 1.08003 * 120.03694 * 0.02562 * 20 19 18 41 41 H 1.08008 * 119.96499 * 180.25431 * 21 20 19 42 42 H 1.07997 * 119.92469 * 179.72434 * 22 21 20 43 43 H 1.08005 * 119.96304 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.04212 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.46203 * 301.72398 * 25 18 17 46 46 H 1.09004 * 109.46228 * 181.75951 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 -1.3183 5 6 2.1721 3.4640 -1.3187 6 1 2.7202 3.8321 -0.4639 7 6 1.9672 4.2811 -2.4102 8 7 1.3003 3.8327 -3.4513 9 14 2.6367 6.0249 -2.4104 10 1 3.3447 6.2834 -1.1308 11 1 3.5839 6.1914 -3.5419 12 1 1.5145 6.9861 -2.5587 13 6 1.9953 -0.7659 1.1377 14 1 3.0798 -0.6625 1.1755 15 6 1.3856 -0.2343 2.4378 16 6 1.8922 -1.0754 3.6127 17 6 1.5293 -2.5434 3.3767 18 7 2.1367 -3.0047 2.1218 19 6 1.9347 -4.3749 1.9420 20 6 1.3160 -4.8419 0.7892 21 6 1.1220 -6.1978 0.6124 22 6 1.5333 -7.0895 1.5861 23 6 2.1447 -6.6276 2.7372 24 6 2.3470 -5.2735 2.9178 25 6 1.6282 -2.2426 0.9742 26 1 -0.3635 0.4513 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8308 30 1 3.0797 1.3443 0.1083 31 1 2.0659 1.5013 -2.1492 32 1 0.5472 2.0844 -1.4267 33 1 1.1565 4.4073 -4.2193 34 1 1.6805 0.8053 2.5801 35 1 0.2990 -0.3006 2.3842 36 1 2.9750 -0.9771 3.6906 37 1 1.4274 -0.7286 4.5356 38 1 0.4457 -2.6432 3.3139 39 1 1.9023 -3.1470 4.2041 40 1 0.9909 -4.1458 0.0302 41 1 0.6448 -6.5619 -0.2855 42 1 1.3764 -8.1490 1.4472 43 1 2.4644 -7.3266 3.4959 44 1 2.8242 -4.9134 3.8172 45 1 0.5441 -2.3438 0.9227 46 1 2.0728 -2.6279 0.0566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081014316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:18 Heat of formation + Delta-G solvation = 17.361475 kcal Electronic energy + Delta-G solvation = -22953.216602 eV Core-core repulsion = 19841.676727 eV Total energy + Delta-G solvation = -3111.539875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52502 -39.65272 -37.61294 -35.29185 -34.06324 -32.51132 -31.67445 -30.21484 -29.70595 -27.78085 -25.99535 -25.62707 -23.95012 -22.56510 -22.32280 -21.44478 -20.26180 -18.79579 -18.43072 -16.86342 -16.68476 -16.53005 -16.12932 -16.02150 -15.84565 -15.55740 -15.10302 -14.80721 -14.60287 -14.39486 -14.35271 -14.08619 -13.82588 -13.41361 -13.24551 -13.20192 -12.86976 -12.63262 -12.43824 -12.39224 -12.32844 -11.91505 -11.88356 -11.79150 -11.61638 -11.51887 -11.31052 -11.15671 -10.60561 -10.53688 -9.82571 -9.12180 -8.75664 -8.20331 -6.31350 0.49096 0.51933 1.39587 1.40264 1.53378 2.38723 2.53959 2.91009 3.13165 3.27050 3.72803 3.77217 3.92006 3.98803 4.11618 4.17418 4.21325 4.29777 4.34807 4.41327 4.46752 4.52280 4.59349 4.62552 4.64761 4.69180 4.74267 4.81193 4.86712 4.86855 5.01365 5.05701 5.11675 5.14507 5.19627 5.31598 5.38819 5.46625 5.55473 5.66495 5.68987 5.78653 5.90359 6.02928 6.09378 6.29793 6.33029 6.38767 6.86077 7.37647 8.92060 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.030918 B = 0.002999 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.412765 B = 9332.963739 C = 9878.410953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.085 3.915 4 C 0.036 3.964 5 C -0.543 4.543 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.090 3.910 14 H 0.075 0.925 15 C -0.153 4.153 16 C -0.106 4.106 17 C 0.061 3.939 18 N -0.495 5.495 19 C 0.100 3.900 20 C -0.191 4.191 21 C -0.102 4.102 22 C -0.155 4.155 23 C -0.098 4.098 24 C -0.151 4.151 25 C 0.075 3.925 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.058 0.942 31 H -0.010 1.010 32 H -0.004 1.004 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.047 0.953 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -20.155 16.192 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.043 4.043 4 C -0.001 4.001 5 C -0.581 4.581 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.019 4.019 14 H 0.093 0.907 15 C -0.192 4.192 16 C -0.145 4.145 17 C -0.064 4.064 18 N -0.210 5.210 19 C 0.002 3.998 20 C -0.212 4.212 21 C -0.121 4.121 22 C -0.174 4.174 23 C -0.117 4.117 24 C -0.171 4.171 25 C -0.052 4.052 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.008 0.992 32 H 0.015 0.985 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.065 0.935 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.344 -20.156 15.646 25.518 hybrid contribution -0.774 1.454 -0.142 1.654 sum -1.118 -18.702 15.504 24.318 Atomic orbital electron populations 1.22414 0.87635 1.01841 1.00419 1.62084 1.08323 1.14515 1.42137 1.21918 0.98372 0.86544 0.97455 1.18932 0.95102 0.93627 0.92477 1.21648 1.35200 0.98967 1.02288 0.92260 1.25960 0.95450 1.03245 0.95060 1.70115 1.42089 1.38202 1.06767 0.85388 0.78197 0.78921 0.78467 1.18571 1.20396 1.20293 1.21674 0.99497 0.92413 0.88280 0.90674 1.22261 1.01018 1.00021 0.95939 1.21534 1.02118 0.92959 0.97852 1.22299 0.96970 0.96829 0.90282 1.58918 1.56388 1.01357 1.04335 1.19167 0.96063 0.88867 0.95717 1.21515 1.02899 0.97306 0.99442 1.21281 0.98630 0.92535 0.99633 1.21392 1.00935 1.00596 0.94434 1.21338 0.97366 0.94983 0.97963 1.20990 1.03265 0.93140 0.99719 1.22042 0.97984 0.92242 0.92945 0.94776 0.93067 0.90426 0.95708 0.92391 0.99169 0.98526 0.92776 0.92337 0.91541 0.91068 0.89111 0.94133 0.88368 0.86146 0.84745 0.84059 0.83507 0.84741 0.93480 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 8.58 127.69 1.10 1.93 16 2 N -0.55 -19.96 4.71 -896.74 -4.23 -24.19 16 3 C 0.08 3.64 4.47 86.30 0.39 4.02 16 4 C 0.04 1.96 4.90 29.85 0.15 2.10 16 5 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 9 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.09 2.66 2.35 44.97 0.11 2.77 16 14 H 0.08 2.40 7.93 -2.39 -0.02 2.38 16 15 C -0.15 -3.85 4.56 30.68 0.14 -3.71 16 16 C -0.11 -2.04 6.10 30.65 0.19 -1.86 16 17 C 0.06 1.16 5.26 86.33 0.45 1.61 16 18 N -0.49 -11.52 4.70 -695.37 -3.27 -14.79 16 19 C 0.10 2.25 5.64 38.22 0.22 2.46 16 20 C -0.19 -4.31 8.82 22.40 0.20 -4.11 16 21 C -0.10 -1.93 10.04 22.25 0.22 -1.70 16 22 C -0.15 -2.48 10.04 22.29 0.22 -2.26 16 23 C -0.10 -1.54 10.04 22.25 0.22 -1.31 16 24 C -0.15 -2.82 9.16 22.40 0.21 -2.61 16 25 C 0.08 1.97 3.37 86.33 0.29 2.27 16 26 H 0.03 1.06 6.16 -2.39 -0.01 1.04 16 27 H 0.05 1.99 6.30 -2.39 -0.02 1.98 16 28 H 0.08 2.21 6.45 -2.38 -0.02 2.20 16 29 H 0.02 1.04 7.12 -2.39 -0.02 1.03 16 30 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.00 -0.20 6.47 -2.39 -0.02 -0.22 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.06 1.61 7.03 -2.39 -0.02 1.59 16 35 H 0.07 1.65 6.20 -2.39 -0.01 1.64 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 1.51 6.71 -2.39 -0.02 1.49 16 40 H 0.12 2.82 5.81 -2.91 -0.02 2.80 16 41 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.13 2.10 7.15 -2.91 -0.02 2.08 16 45 H 0.05 1.21 6.09 -2.39 -0.01 1.20 16 46 H 0.08 2.18 6.99 -2.38 -0.02 2.16 16 Total: -1.00 -66.10 348.62 0.55 -65.55 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.95 Total: 14.95 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 4.79 Total: -31.05 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -7.21 Total: -96.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.10 0.55 -65.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081014316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.908 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds