Wall clock time and date at job start Fri Apr 10 2020 19:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00380 * 2 1 4 4 C 1.50699 * 109.47110 * 66.04330 * 3 2 1 5 5 C 1.38229 * 120.00048 * 90.00379 * 4 3 2 6 6 C 1.38229 * 120.00267 * 179.72665 * 5 4 3 7 7 C 1.38244 * 119.99759 * 0.25134 * 6 5 4 8 8 C 1.38234 * 119.99782 * 0.02629 * 7 6 5 9 9 C 1.38228 * 120.00085 * 359.97168 * 8 7 6 10 10 C 1.46904 * 110.99864 * 236.04298 * 2 1 3 11 11 H 1.08999 * 110.27442 * 66.03025 * 10 2 1 12 12 C 1.54601 * 110.30824 * 303.82899 * 10 2 1 13 13 C 1.54934 * 102.92021 * 219.12687 * 12 10 2 14 14 N 1.48535 * 103.22914 * 37.41942 * 13 12 10 15 15 C 1.46900 * 111.00031 * 200.27506 * 14 13 12 16 16 C 1.52996 * 109.47232 * 307.39587 * 15 14 13 17 17 C 1.50700 * 109.47285 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00354 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00065 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99904 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47387 * 89.99667 * 21 19 17 23 23 H 1.48497 * 109.46890 * 209.99967 * 21 19 17 24 24 H 1.48508 * 109.47032 * 329.99388 * 21 19 17 25 25 C 1.47901 * 105.81696 * 320.78824 * 14 13 12 26 26 H 1.09004 * 109.46927 * 54.83807 * 1 2 3 27 27 H 1.08997 * 109.47457 * 174.83502 * 1 2 3 28 28 H 1.09000 * 109.47617 * 294.83799 * 1 2 3 29 29 H 1.09002 * 109.46882 * 306.04355 * 3 2 1 30 30 H 1.08997 * 109.47095 * 186.04831 * 3 2 1 31 31 H 1.08000 * 120.00097 * 359.97438 * 5 4 3 32 32 H 1.08006 * 120.00393 * 180.27264 * 6 5 4 33 33 H 1.07995 * 119.99679 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.99527 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.00097 * 179.97438 * 9 8 7 36 36 H 1.08994 * 110.72638 * 337.48816 * 12 10 2 37 37 H 1.09000 * 110.71958 * 100.76973 * 12 10 2 38 38 H 1.08998 * 110.66986 * 278.98241 * 13 12 10 39 39 H 1.08998 * 110.80906 * 155.91795 * 13 12 10 40 40 H 1.09008 * 109.46812 * 67.39602 * 15 14 13 41 41 H 1.08993 * 109.47124 * 187.39228 * 15 14 13 42 42 H 1.08996 * 109.47350 * 300.00154 * 16 15 14 43 43 H 1.09004 * 109.47049 * 60.00169 * 16 15 14 44 44 H 0.96997 * 119.99769 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.92103 * 265.97594 * 25 14 13 46 46 H 1.09008 * 109.91293 * 144.68122 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.4938 1.9650 2.3799 6 6 2.1677 2.5896 3.5692 7 6 0.9820 3.2920 3.6785 8 6 0.1224 3.3693 2.5987 9 6 0.4487 2.7447 1.4095 10 6 1.9954 -0.7661 -1.1376 11 1 1.7429 -0.2712 -2.0754 12 6 1.4341 -2.2065 -1.1202 13 6 2.6524 -3.0583 -1.5569 14 7 3.7968 -2.3766 -0.8998 15 6 5.0642 -2.7245 -1.5561 16 6 5.1944 -4.2466 -1.6393 17 6 6.4942 -4.6036 -2.3131 18 1 7.1610 -3.8228 -2.6482 19 6 6.8328 -5.9268 -2.5010 20 7 7.9674 -6.2382 -3.0886 21 14 5.6799 -7.2773 -1.9209 22 1 4.7332 -7.6225 -3.0117 23 1 6.4708 -8.4791 -1.5531 24 1 4.9192 -6.8039 -0.7366 25 6 3.5217 -0.9278 -1.0126 26 1 -0.3633 0.5918 -0.8402 27 1 -0.3634 -1.0234 -0.0925 28 1 -0.3634 0.4317 0.9326 29 1 1.5612 1.9273 -0.8310 30 1 3.0797 1.3443 -0.1083 31 1 3.4201 1.4162 2.2946 32 1 2.8393 2.5291 4.4129 33 1 0.7274 3.7803 4.6075 34 1 -0.8040 3.9177 2.6842 35 1 -0.2231 2.8048 0.5659 36 1 1.1104 -2.4823 -0.1167 37 1 0.6157 -2.3101 -1.8327 38 1 2.7652 -3.0411 -2.6409 39 1 2.5572 -4.0829 -1.1975 40 1 5.0805 -2.3029 -2.5612 41 1 5.8953 -2.3197 -0.9788 42 1 5.1780 -4.6682 -0.6343 43 1 4.3631 -4.6514 -2.2167 44 1 8.2057 -7.1692 -3.2205 45 1 4.0116 -0.5246 -1.8989 46 1 3.8780 -0.4117 -0.1209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081533846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:25 Heat of formation + Delta-G solvation = 37.361452 kcal Electronic energy + Delta-G solvation = -22585.034186 eV Core-core repulsion = 19474.361575 eV Total energy + Delta-G solvation = -3110.672611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91586 -38.91803 -36.46744 -33.42854 -32.17151 -31.14191 -30.90316 -29.38539 -28.19472 -26.88027 -24.50817 -23.57339 -22.70045 -21.64631 -21.16793 -19.81881 -19.57384 -16.99660 -16.84756 -16.50374 -15.68512 -15.42902 -15.26190 -14.80401 -14.34776 -14.14988 -13.87245 -13.76297 -13.58146 -13.03693 -12.77913 -12.72162 -12.49498 -12.38010 -12.24824 -11.94040 -11.73956 -11.25263 -11.21142 -11.13444 -10.99814 -10.88410 -10.78141 -10.72079 -9.97669 -9.81990 -9.71119 -9.18745 -9.08893 -8.97086 -8.52169 -8.41664 -7.87021 -6.03190 -4.01282 1.14171 1.23254 3.32510 3.40305 3.46253 3.47833 3.97708 4.44961 4.47374 4.53330 4.64307 4.69407 4.81861 4.90744 4.94181 5.07615 5.18780 5.22533 5.30770 5.31409 5.37205 5.46834 5.48033 5.55166 5.67672 5.77902 5.80909 5.84898 5.88479 5.90380 5.98615 6.12250 6.19775 6.26299 6.30747 6.33265 6.38760 6.45395 6.75560 6.81094 6.91134 7.02285 7.17936 7.29845 7.47743 7.64835 7.86774 8.54425 9.00906 9.59338 11.10222 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.002897 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.393242 B = 9661.359641 C =10027.684078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.522 5.522 3 C 0.088 3.912 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.121 4.121 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.115 4.115 10 C 0.074 3.926 11 H 0.044 0.956 12 C -0.117 4.117 13 C 0.039 3.961 14 N -0.514 5.514 15 C 0.061 3.939 16 C -0.010 4.010 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.043 3.957 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.026 0.974 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.011 0.989 44 H 0.263 0.737 45 H 0.040 0.960 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.186 18.873 9.248 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.246 5.246 3 C -0.039 4.039 4 C -0.073 4.073 5 C -0.114 4.114 6 C -0.139 4.139 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.034 4.034 11 H 0.062 0.938 12 C -0.155 4.155 13 C -0.089 4.089 14 N -0.238 5.238 15 C -0.066 4.066 16 C -0.048 4.048 17 C -0.559 4.559 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.187 1.187 25 C -0.086 4.086 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.030 0.970 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.841 18.327 10.144 27.515 hybrid contribution -0.781 -0.128 -1.405 1.613 sum -18.622 18.198 8.739 27.465 Atomic orbital electron populations 1.22466 0.87547 1.02063 1.00661 1.62116 1.07657 1.12056 1.42788 1.21124 1.01142 0.88212 0.93409 1.19742 0.94675 0.97293 0.95636 1.21093 0.99772 0.98158 0.92417 1.21183 0.97084 0.97842 0.97809 1.21139 0.94782 0.99669 0.98596 1.21081 0.99626 1.00111 0.93412 1.21041 0.96383 0.98099 0.97834 1.22553 0.95495 0.94492 0.90884 0.93827 1.22626 0.97421 0.93129 1.02317 1.23149 0.89751 0.98973 0.97042 1.64878 1.02801 1.03730 1.52430 1.22314 0.89608 0.99297 0.95363 1.19617 0.97168 0.90794 0.97223 1.21084 1.03424 0.93262 1.38133 0.91137 1.25001 0.95067 0.98728 0.94613 1.69916 1.22688 1.18281 1.43441 0.86771 0.81164 0.81489 0.79896 1.20398 1.21399 1.18702 1.22943 0.93333 0.91479 1.00817 0.96005 0.91016 0.91195 0.94154 0.89438 0.85718 0.86082 0.86359 0.86357 0.86573 0.89703 0.91689 0.93805 0.89853 0.95537 0.91283 0.95691 0.97043 0.92747 0.94128 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.80 60.06 0.53 0.73 16 2 N -0.52 -5.92 4.52 -234.69 -1.06 -6.98 16 3 C 0.09 0.90 4.90 -4.98 -0.02 0.87 16 4 C -0.07 -0.73 4.89 -104.63 -0.51 -1.25 16 5 C -0.10 -0.98 9.70 -39.59 -0.38 -1.36 16 6 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 7 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 8 C -0.12 -1.04 10.05 -39.59 -0.40 -1.43 16 9 C -0.11 -1.04 8.08 -39.59 -0.32 -1.36 16 10 C 0.07 0.92 2.73 -66.35 -0.18 0.74 16 11 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 12 C -0.12 -1.49 5.32 -24.87 -0.13 -1.62 16 13 C 0.04 0.63 5.11 -1.90 -0.01 0.62 16 14 N -0.51 -9.13 5.40 -230.45 -1.24 -10.38 16 15 C 0.06 1.27 4.97 -3.83 -0.02 1.25 16 16 C -0.01 -0.25 3.70 -27.88 -0.10 -0.36 16 17 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 18 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 21 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 25 C 0.04 0.62 5.78 -2.75 -0.02 0.61 16 26 H 0.02 0.19 8.08 -51.93 -0.42 -0.23 16 27 H 0.07 0.68 6.39 -51.93 -0.33 0.35 16 28 H 0.07 0.67 6.50 -51.93 -0.34 0.34 16 29 H 0.04 0.38 8.02 -51.93 -0.42 -0.03 16 30 H 0.09 0.90 6.31 -51.93 -0.33 0.58 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.89 8.02 -52.48 -0.42 0.47 16 36 H 0.08 1.12 7.49 -51.93 -0.39 0.73 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.04 0.72 8.00 -51.93 -0.42 0.31 16 39 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 40 H 0.03 0.55 7.81 -51.92 -0.41 0.14 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 43 H 0.01 0.27 6.22 -51.93 -0.32 -0.05 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.04 0.59 7.57 -51.93 -0.39 0.19 16 46 H 0.08 1.20 6.70 -51.92 -0.35 0.85 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -31.35 356.25 -11.47 -42.83 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.84 Total: -1.81 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.80 Total: -18.98 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -1.53 Total: -44.76 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.35 -11.47 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081533846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.188 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds